Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CSMD2 114784 broad.mit.edu 37 1 34554769 34554769 + Silent SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . CSMD2 NM_052896 exon2 c.C93T p.H31H GGGACCGTGCAGT 141 4 0.03 151 1 0.0066225166 946 11 0 0.00 SLC2A1 6513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 43395380 43395380 + Missense_Mutation SNP T T C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_006516 exon6 c.A751G p.M251V GCATCATCTGCCG 40 9 0.23 57 0 0 97 26 0.27 DPH2 1802 mdanderson.org 37 1 44437573 44437573 + Silent SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_001384 exon4 c.G999T p.V333V TGAGGTGGATGTC 45 3 0.07 80 0 0 135 0 0.00 GLIS1 148979 mdanderson.org 37 1 53972366 53972366 + Missense_Mutation SNP C C A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_147193 exon10 c.G1789T p.D597Y CACAGTCCTCGGG 40 3 0.08 56 0 0 1 0 0.00 CLCC1 23155 broad.mit.edu 37 1 109492518 109492518 + Missense_Mutation SNP T T C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . CLCC1 NM_001048210 exon3 c.A155G p.K52R ACATCCTTTTCCC 501 4 0.01 600 0 0 55 48 0 0.00 GBAP1 0 broad.mit.edu 37 1 155185875 155185876 + RNA INS - - T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . TTTTCTATTTTTT 7 3 0.43 11 0 0 0 0 METTL13 51603 broad.mit.edu 37 1 171759727 171759727 + Missense_Mutation SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . METTL13 NM_015935 exon5 c.C1445T p.A482V GCCTTGCCCTGCT 254 4 0.02 289 0 0 67 65 0 0.00 IRF2BP2 359948 mdanderson.org 37 1 234745106 234745106 + Silent SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_182972 exon1 c.C135A p.G45G GTCGGCGCCCTCG 43 3 0.07 51 0 0 17 0 0.00 NLRP3 114548 mdanderson.org 37 1 247599286 247599286 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_004895 exon6 c.G2513T p.C838F GCTGCTGCCTCAC 46 3 0.07 63 1 0.0158730159 7 0 0.00 RRP12 23223 mdanderson.org 37 10 99133626 99133626 + Silent SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_015179 exon16 c.C1824T p.S608S CACTGTGCTGCCT 38 3 0.08 51 0 0 232 0 0.00 OR51M1 390059 mdanderson.org 37 11 5411095 5411095 + Missense_Mutation SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_001004756 exon1 c.C467T p.A156V TCAGAGCAGGCCT 36 3 0.08 55 0 0 0 0 OR52D1 390066 hgsc.bcm.edu;broad.mit.edu 37 11 5510157 5510158 + In_Frame_Ins INS - - GGC novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . OR52D1 NM_001005163 exon1 c.221_222insGGC p.L74delinsLA CAGACCTGGCTCT 155 14 0.09 198 0 0 66 0 0 USH1C 10083 mdanderson.org 37 11 17531263 17531263 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_153676 exon18 c.C1653A p.F551L ATAGTAGAACATG 10 2 0.20 8 0 0 7 0 0.00 BDNF 627 mdanderson.org 37 11 27681195 27681195 + RNA SNP T T C rs28405820 TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . TGTGTGTGCGCGC 109 8 0.07 139 1 0.0071942446 0 0 TUT1 0 broad.mit.edu 37 11 62346492 62346492 + Missense_Mutation SNP T T C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . TUT1 NM_022830 exon5 c.A815G p.K272R GGAGCCTTTGGGA 84 3 0.04 94 0 0 122 100 0 0.00 MTA2 9219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62367713 62367713 + Missense_Mutation SNP C C G novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_004739 exon3 c.G115C p.E39Q TTGCCTCCACATT 109 33 0.30 108 0 0 109 34 0.31 C11orf95 65998 broad.mit.edu;mdanderson.org 37 11 63533328 63533328 + RNA SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_001144936 exon2 c.G588A p.E196E CTCCTCCTCTTCT 36 3 0.08 36 0 0 2 0 0.00 SLC25A45 283130 mdanderson.org 37 11 65144435 65144435 + Missense_Mutation SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_182556 exon6 c.C452T p.A151V GAGGCTGCACAGT 44 3 0.07 55 0 0 10 0 0.00 ZDHHC24 254359 mdanderson.org 37 11 66313361 66313361 + Silent SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_207340 exon1 c.G114A p.V38V ACCGAGCACCAGC 10 2 0.20 14 0 0 4 0 0.00 SCAF11 9169 mdanderson.org 37 12 46321423 46321423 + Silent SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed SCAF11,colon,carcinoma,0,1 SCAF11 NM_004719 exon11 c.G2061A p.S687S GGTCAGCGATTCA 49 3 0.06 48 0 0 0 1 70 0 0.00 KNTC1 9735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 123107038 123107038 + Missense_Mutation SNP C C G novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed KNTC1,NS,carcinoma,0,1 KNTC1 NM_014708 exon62 c.C6399G p.I2133M TATCATCAATAAG 146 14 0.10 138 0 0 0 1 194 48 0.25 DACH1 1602 mdanderson.org 37 13 72440446 72440446 + Silent SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_080759 exon1 c.C462T p.S154S ACTACTGCTGCTG 30 4 0.13 40 1 0.025 2 0 0.00 IRS2 8660 mdanderson.org 37 13 110436412 110436412 + Silent SNP C C A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_003749 exon1 c.G1989T p.A663A ACTGCCCGCGAGG 10 2 0.20 17 0 0 3 0 0.00 . 0 broad.mit.edu 37 14 19857036 19857036 + RNA SNP A A G rs374719458 TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . ATAATAAAGTTCA 74 3 0.04 77 1 0.012987013 2 0 0.00 . 28401 bcgsc.ca 37 14 106478531 106478531 + RNA SNP G G A rs368146435 bycluster TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . CCACAGGTGTTTC 148 12 0.08 218 0 0 483 71 0.15 LOC100131089 0 broad.mit.edu 37 15 40331548 40331549 + RNA DEL CA CA - novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 CA CA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . GGTCGTCACATGC 9 5 0.56 4 0 0 31 0 0.00 SOLH 6650 mdanderson.org 37 16 602370 602370 + Silent SNP C C T rs75045595 bycluster;by1000genomes TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_005632 exon11 c.C2577T p.S859S CGGCAGCGGCGGC 22 3 0.14 26 0 0 0 39 0 0.00 RSL1D1 26156 broad.mit.edu 37 16 11931765 11931765 + Missense_Mutation SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . RSL1D1 NM_015659 exon9 c.C1352T p.A451V TGTCTCGCATCTT 165 4 0.02 161 0 0 40 793 2 0.00 NOD2 64127 mdanderson.org 37 16 50733757 50733757 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_022162 exon2 c.G432T p.R144S CAGGAGGCTCCAC 32 3 0.09 44 0 0 6 0 0.00 SMPD3 55512 mdanderson.org 37 16 68395599 68395599 + Silent SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_018667 exon8 c.C1773A p.G591G CTTCTGGCCCGAG 39 3 0.08 55 0 0 15 0 0.00 ATP2C2 9914 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 84456001 84456001 + Silent SNP G G A rs200504983 bycluster;by1000genomes TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . ATP2C2 NM_014861 exon8 c.G630A p.T210T GGTCACGGACCTC 101 18 0.18 129 1 0.007751938 75 0 0 FAM83G 644815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 18882003 18882003 + Missense_Mutation SNP T T C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_001039999 exon5 c.A976G p.I326V GCACAATAGGCTC 58 8 0.14 118 0 0 12 1 0.08 ALDH3A1 218 mdanderson.org 37 17 19642929 19642929 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_001135168 exon7 c.C1008A p.F336L AGGCCCGAAGATC 39 3 0.08 48 0 0 0 0 . 0 broad.mit.edu 37 17 20452860 20452861 + RNA INS - - AGA rs10692824 TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . ACCTGGGAGAAGG 12 5 0.42 15 5 0.3333333333 0 0 TBC1D3P5 440419 hgsc.bcm.edu 37 17 25756182 25756182 + RNA SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . TCCAGGGGTGCCA 36 6 0.17 31 0 0 0 0 NF1 4763 hgsc.bcm.edu;broad.mit.edu 37 17 29486050 29486051 + Frame_Shift_Del DEL AA AA - novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 AA AA Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed .,1 NF1 NM_001042492 exon3 c.226_227del p.76_76del CTGCTGAAAAAAA 60 10 0.17 47 0 0 1586 8 0 0.00 XYLT2 64132 mdanderson.org 37 17 48431836 48431836 + Silent SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_022167 exon3 c.G696T p.V232V CCCGGTGCGAATC 23 3 0.13 42 0 0 49 0 0.00 VMP1 81671 mdanderson.org 37 17 57886171 57886171 + Silent SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_030938 exon8 c.G729A p.R243R CTCCCGGGCCAAA 33 3 0.09 51 0 0 130 0 0.00 LPHN1 22859 mdanderson.org 37 19 14268080 14268080 + Missense_Mutation SNP C C T rs370012631 TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed LPHN1,NS,carcinoma,0,1 LPHN1 NM_001008701 exon15 c.G2743A p.D915N TCTTGTCGATCCC 40 3 0.08 35 0 0 0 1 161 1 0.01 SIPA1L3 23094 hgsc.bcm.edu 37 19 38673203 38673203 + Missense_Mutation SNP C C A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_015073 exon16 c.C4253A p.T1418N ACAAAACTGCCAG 123 5 0.04 146 0 0 45 0 0.00 NKPD1 284353 mdanderson.org 37 19 45656858 45656858 + Silent SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_198478 exon4 c.C837A p.I279I AAAGCGGATGAAA 14 2 0.14 21 0 0 13 0 0.00 TRIM28 10155 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 59060468 59060468 + Missense_Mutation SNP T T A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed TRIM28,NS,carcinoma,+1,1 TRIM28 NM_005762 exon12 c.T1523A p.V508D TCAAGGTCTTCCC 244 48 0.20 307 0 0 1 1 2245 977 0.44 SNTG2 54221 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 1133331 1133331 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . SNTG2 NM_018968 exon5 c.G349T p.V117L TTGTTCGTAGGAG 102 5 0.05 128 0 0 125 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89104503 89104504 + RNA INS - - C rs149625899 bycluster;by1000genomes TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . ATTTTTTTCAGAT 16 7 0.44 16 1 0.0625 1 1 1.00 CPXM1 56265 mdanderson.org 37 20 2778886 2778886 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed CPXM1,NS,carcinoma,0,1 CPXM1 NM_001184699 exon4 c.C502A p.Q168K CGTCCTGCTCCTC 47 3 0.06 39 0 0 0 1 147 0 0.00 OVOL2 58495 mdanderson.org 37 20 18037394 18037394 + Silent SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_021220 exon2 c.C228A p.A76A CTCGGGGGCGTGC 11 2 0.18 26 0 0 5 0 0.00 CSRP2BP 57325 mdanderson.org 37 20 18139746 18139746 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_020536 exon4 c.G519T p.W173C TACCTGGTGGAGC 78 4 0.05 100 0 0 89 0 0.00 RALY 22913 broad.mit.edu 37 20 32664877 32664877 + Silent SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . RALY NM_016732 exon8 c.C702T p.G234G CGGCGGCGGTGGT 75 4 0.05 96 1 0.0104166667 44 170 0 0.00 STX16-NPEPL1 100534593 hgsc.bcm.edu 37 20 57266755 57266755 + RNA SNP T T C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . CTTTTTTTTTTTT 30 4 0.13 26 0 0 0 0 MRPL40 64976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 19422334 19422334 + Missense_Mutation SNP G G C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_003776 exon3 c.G213C p.K71N AAGGAAGATCCGA 115 12 0.10 133 0 0 181 36 0.20 POM121L9P 0 broad.mit.edu 37 22 24659809 24659809 + RNA SNP G G A rs376621154 TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . ATCTGCGCACCCG 30 9 0.30 13 0 0 3 0 0.00 POM121L9P 0 broad.mit.edu 37 22 24659813 24659813 + RNA SNP C C T rs368832816 TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . GCGCACCCGGAGG 30 9 0.30 12 0 0 3 0 0.00 SLC35E4 339665 mdanderson.org 37 22 31042971 31042971 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_001001479 exon2 c.G1006T p.A336S TGGGCTGCCCGTC 34 3 0.09 53 0 0 20 0 0.00 CDC42EP1 11135 broad.mit.edu 37 22 37964340 37964340 + Missense_Mutation SNP A A C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed CDC42EP1,middle_lobe,carcinoma,0,1 CDC42EP1 NM_152243 exon3 c.A689C p.N230T CTGCAAACCCCCC 46 7 0.15 51 5 0.0980392157 53 1 112 2 0.02 TYMP 1890 mdanderson.org 37 22 50965054 50965054 + Silent SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_001113756 exon6 c.C879T p.C293C GTCCATGCAGAGC 29 3 0.10 33 0 0 261 0 0.00 SUCLG2 8801 mdanderson.org 37 3 67426205 67426205 + Missense_Mutation SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_003848 exon11 c.C1262T p.A421V TTGGCTGCATCCT 76 4 0.05 84 0 0 104 0 0.00 PLXND1 23129 mdanderson.org 37 3 129277296 129277296 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_015103 exon33 c.C5420A p.S1807Y GAGATGGAGCAGG 37 3 0.08 67 0 0 315 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599320 55599320 + Missense_Mutation SNP G G T rs121913506 bycluster TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed KIT,colon,carcinoma,0,932 KIT NM_000222 exon17 c.G2446T p.D816Y GCCAGAGACATCA 45 11 0.24 82 0 0 0 932 369 114 0.31 NUP155 9631 mdanderson.org 37 5 37309257 37309257 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_153485 exon24 c.C2741A p.S914Y ACATTGGAAAGGT 122 5 0.04 157 0 0 53 0 0.00 RIOK2 55781 broad.mit.edu 37 5 96504548 96504548 + Missense_Mutation SNP T T C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . RIOK2 NM_001159749 exon7 c.A788G p.D263G TCTCTGTCAAAAT 134 4 0.03 173 0 0 82 50 0 0.00 WRNIP1 56897 broad.mit.edu 37 6 2766364 2766375 + In_Frame_Del DEL GGCGACGGCGAT GGCGACGGCGAT - novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 GGCGACGGCGAT GGCGACGGCGAT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . WRNIP1 NM_130395 exon1 c.508_519del p.170_173del GCCGTGGGCGACG 6 3 0.50 10 0 0 39 4 0 0.00 UBD 10537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 29523770 29523770 + Missense_Mutation SNP T T C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_006398 exon2 c.A385G p.T129A TCTGGGTCTCAGG 301 44 0.15 257 0 0 918 4 0.00 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 152702176 152702176 + Missense_Mutation SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_033071 exon56 c.G8995A p.D2999N CCTCATCCGTGTT 150 17 0.11 121 0 0 3 0 0.00 ZAN 7455 broad.mit.edu 37 7 100365263 100365263 + RNA DEL A A - novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . ZAN . . . . ACGGCTAATTTTT 8 7 0.88 7 0 0 658 0 0 PPP1R3A 5506 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 113518539 113518539 + Missense_Mutation SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_002711 exon4 c.C2608T p.P870S CTGTTGGTAACAT 110 10 0.09 86 0 0 1 0 0.00 DLC1 10395 broad.mit.edu 37 8 12957624 12957624 + Missense_Mutation SNP C C G novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed DLC1,bladder,carcinoma,0,3 DLC1 NM_182643 exon9 c.G2222C p.S741T CTGCTGCTGGTCT 59 3 0.05 66 0 0 411 3 29 0 0.00 PLEC 5339 mdanderson.org 37 8 144992458 144992458 + Missense_Mutation SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_201380 exon32 c.G11942A p.R3981H TAGCTGCGCACCT 10 2 0.20 8 0 0 381 84 0.22 OPLAH 26873 mdanderson.org 37 8 145108284 145108284 + Missense_Mutation SNP G G T rs186909122 by1000genomes;alternate_allele TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_017570 exon20 c.C2699A p.A900D CGCAGGGCCTCCG 30 4 0.13 64 1 0.015625 1 0 0.00 NDUFB6 4712 mdanderson.org 37 9 32558939 32558939 + Missense_Mutation SNP C C T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_002493 exon3 c.G287A p.G96D ACTATGCCATATG 45 3 0.07 61 0 0 149 0 0.00 PHF19 26147 mdanderson.org 37 9 123631480 123631480 + Silent SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_015651 exon6 c.C594T p.C198C GCAGTAGCAGTAG 47 3 0.06 80 0 0 21 0 0.00 SLC2A6 11182 mdanderson.org 37 9 136342253 136342253 + Silent SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_017585 exon3 c.C366A p.G122G CGCATAGCCGGCC 53 3 0.06 63 0 0 21 0 0.00 RNR1 6052 hgsc.bcm.edu 37 MT 1016 1016 + RNA SNP T T C novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . ACAAAATAGACTA 25 15 0.60 88 0 0 0 0 tRNA-Pro 0 hgsc.bcm.edu 37 MT 15986 15986 + RNA SNP G G A novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . CCATTAGCACCCA 11 9 0.82 40 0 0 0 0 CLDN2 9075 mdanderson.org 37 X 106172012 106172012 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . NM_001171092 exon2 c.G554T p.C185F TTTCCTGCTCATC 39 3 0.08 35 0 0 0 0 BAHCC1 57597 mdanderson.org 37 17 79408982 79408982 + Missense_Mutation SNP G G T novel TCGA-2X-A9D6-01A-11D-A435-10 TCGA-2X-A9D6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b979e342-5eb9-45ee-a81e-0e39fb7ad8d8 a1cea35c-93b2-46a3-88f0-2115e5c0e5ed . . . . . . GACCGGGGTGAGG 74 5 0.07 142 0 0 17 0 0.00