Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CLCNKB 1188 mdanderson.org 37 1 16377477 16377477 + Silent SNP G G T rs13306237 bycluster TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_000085 exon12 c.G1161T p.L387L GCACCTGTGGTGG 97 9 0.09 124 0 0 0 0 BCAN 63827 mdanderson.org 37 1 156617454 156617454 + Nonsense_Mutation SNP G G A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_021948 exon4 c.G621A p.W207X TGGCTGGCTGTCG 50 3 0.06 44 0 0 3 0 0.00 DNAJC1 64215 mdanderson.org 37 10 22292356 22292356 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_022365 exon1 c.C8A p.A3D CAAGGAGCCGTCA 11 2 0.18 17 0 0 2 0 0.00 CDH23 64072 mdanderson.org 37 10 73558990 73558990 + Missense_Mutation SNP G G A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 CDH23,rectum,carcinoma,-2,1 CDH23 NM_022124 exon49 c.G7177A p.V2393M GAAATCGTGGACA 45 3 0.07 93 0 0 -2 1 0 0 USP54 159195 mdanderson.org 37 10 75276934 75276934 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_152586 exon18 c.C3250A p.L1084I AGTGAAGCACAAA 46 3 0.07 65 0 0 72 0 0.00 SLIT1 6585 mdanderson.org 37 10 98781159 98781159 + Missense_Mutation SNP G G A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_003061 exon26 c.C2594T p.A865V GGGTTGGCACCAA 82 4 0.05 102 1 0.0098039216 0 0 CPXM2 119587 mdanderson.org 37 10 125528156 125528156 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_198148 exon9 c.C1185A p.F395L ACACACGAACTGC 20 2 0.10 36 0 0 12 0 0.00 FANK1 92565 mdanderson.org 37 10 127585212 127585212 + Missense_Mutation SNP A A T rs145156460 bycluster TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 FANK1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,2 FANK1 NM_145235 exon1 c.A1T p.M1L CCGACCATGGAGC 22 3 0.14 9 0 0 0 2 13 0 0.00 MUC6 4588 mdanderson.org 37 11 1017211 1017211 + Missense_Mutation SNP C C T rs36128067 TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_005961 exon31 c.G5590A p.A1864T AAGTGGCCATCTG 108 12 0.11 148 2 0.0135135135 0 0 OR52L1 338751 mdanderson.org 37 11 6007599 6007599 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001005173 exon1 c.C562A p.Q188K TGGCTTGGCAGAA 53 3 0.06 67 0 0 0 0 DGKZ 8525 broad.mit.edu 37 11 46391504 46391504 + Missense_Mutation SNP G G T rs373801182 alternate_allele TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . DGKZ NM_001105540 exon7 c.G1079T p.R360L TTGTACGGCACCA 238 5 0.02 364 0 0 199 204 0 0.00 VPS37C 55048 mdanderson.org 37 11 60901523 60901523 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_017966 exon3 c.C250A p.Q84K CCTTCTGCTCCTG 39 3 0.08 56 0 0 120 0 0.00 TEX40 0 broad.mit.edu 37 11 64067718 64067718 + RNA SNP T T G novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . GGCGGGTGGGGTG 15 9 0.60 34 14 0.4117647059 0 0 EHBP1L1 254102 mdanderson.org 37 11 65350066 65350066 + Missense_Mutation SNP A A G novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001099409 exon9 c.A1923G p.I641M GGTCATAGAGACC 32 3 0.09 49 0 0 40 0 0.00 ALDH3B2 222 mdanderson.org 37 11 67434105 67434105 + Missense_Mutation SNP C C T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 ALDH3B2,NS,carcinoma,0,1 ALDH3B2 NM_001031615 exon4 c.G91A p.A31T AGGGTGCGATGAT 48 3 0.06 61 0 0 0 1 0 0 ATM 472 mdanderson.org 37 11 108121539 108121539 + Silent SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 ATM_ENST00000278616,colon,carcinoma,+1,2 ATM_ENST00000278616 NM_000051 exon10 c.G1347T p.G449G ACATGGGGAACGT 24 3 0.13 53 0 0 1 2 11 0 0.00 TBCEL 219899 mdanderson.org 37 11 120925820 120925820 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001130047 exon5 c.G515T p.C172F CTATTTGCTGTCA 51 4 0.08 99 0 0 24 0 0.00 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25380276 25380276 + Missense_Mutation SNP T T C rs121913240 bycluster TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 KRAS_ENST00000256078,colon,carcinoma,+1,429 KRAS_ENST00000256078 NM_004985 exon3 c.A182G p.Q61R TCCTCTTGACCTG 185 55 0.30 107 0 0 1 429 142 33 0.23 . 0 broad.mit.edu 37 12 52493869 52493869 + RNA DEL C C - novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . TCCTCTCCCCCCC 6 2 0.33 4 0 0 0 0 KRT79 338785 broad.mit.edu 37 12 53217693 53217693 + Missense_Mutation SNP T T C novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . KRT79 NM_175834 exon6 c.A1124G p.E375G TCAGCCTCCCCCT 69 3 0.04 62 0 0 78 0 0 GOLGA3 2802 hgsc.bcm.edu 37 12 133353241 133353241 + Silent SNP T T C novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 GOLGA3,right_upper_lobe,carcinoma,0,2 GOLGA3 NM_005895 exon21 c.A3957G p.E1319E TAGCCCTTCCAGT 63 3 0.05 50 2 0.04 0 2 168 1 0.01 TPTE2P6 0 broad.mit.edu 37 13 25168489 25168489 + RNA SNP G G A rs200109937 bycluster TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . AGTGCAGTTTTTC 27 3 0.11 31 0 0 39 1 0.03 COL4A1 1282 mdanderson.org 37 13 110835421 110835421 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001845 exon28 c.C2014A p.P672T TTCCTGGGGTTCC 54 3 0.06 77 0 0 492 0 0.00 PIGH 5283 mdanderson.org 37 14 68066816 68066816 + Silent SNP C C T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_004569 exon1 c.G105A p.R35R CGAGAGCCGAGGG 61 4 0.07 50 0 0 41 0 0.00 . 0 broad.mit.edu 37 14 106993939 106993941 + RNA DEL TAC TAC - novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 TAC TAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . ATATGGTACTACT 293 11 0.04 230 5 0.0217391304 150 0 0.00 C15orf60 283677 mdanderson.org 37 15 73735668 73735668 + Missense_Mutation SNP C C T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001042367 exon1 c.C142T p.P48S ACAGCCCCCTGCC 23 3 0.13 20 0 0 0 0 ZNF592 9640 mdanderson.org 37 15 85341275 85341275 + Missense_Mutation SNP C C A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_014630 exon6 c.C2575A p.Q859K CCCTCCCAGTGAG 43 3 0.07 43 0 0 50 0 0.00 MAPK8IP3 23162 mdanderson.org 37 16 1812424 1812424 + Missense_Mutation SNP C C A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_015133 exon14 c.C1609A p.Q537K CGGAACCAGTACA 51 3 0.06 42 0 0 13 0 0.00 CLN3 1201 mdanderson.org 37 16 28495343 28495343 + Silent SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001042432 exon10 c.C774A p.A258A CTCCGGGGCCTCG 48 3 0.06 67 0 0 105 0 0.00 ITGAX 3687 mdanderson.org 37 16 31371771 31371771 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 ITGAX,NS,carcinoma,0,2 ITGAX NM_000887 exon8 c.G848T p.R283L TCATCCGCTATGC 49 3 0.06 47 0 0 0 2 8 0 0.00 ARHGEF15 22899 mdanderson.org 37 17 8215854 8215854 + Missense_Mutation SNP A A G novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_025014 exon2 c.A497G p.Q166R GGGCTCAGGATGC 39 3 0.08 32 0 0 24 0 0.00 MYH2 4620 mdanderson.org 37 17 10428649 10428649 + Silent SNP G G T rs375114012 alternate_allele TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001100112 exon33 c.C4554A p.L1518L TTCCGTGAGGTCA 77 4 0.05 83 0 0 0 0 GPR179 440435 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 36485919 36485921 + In_Frame_Del DEL TCT TCT - novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 TCT TCT Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . GPR179 NM_001004334 exon11 c.3532_3534del p.1178_1178del CCTCTGTCTTCTT 86 12 0.14 123 0 0 170 0 0 KRT32 3882 mdanderson.org 37 17 39623426 39623426 + Missense_Mutation SNP C C T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_002278 exon1 c.G152A p.C51Y GGCAGGCAGACCG 49 3 0.06 57 0 0 0 0 LSM12 124801 broad.mit.edu 37 17 42143886 42143886 + Missense_Mutation SNP G G A rs374081346 alternate_allele TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . LSM12 NM_152344 exon2 c.C70T p.R24W GCAGCCGCTGCTC 165 6 0.04 168 1 0.005952381 16 44 0 0.00 MRPL45P2 0 broad.mit.edu 37 17 45567245 45567246 + RNA INS - - A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . CCATCTCAAAAAA 8 3 0.38 10 0 0 0 0 LOC644669 0 broad.mit.edu 37 18 15322956 15322962 + RNA DEL TTTATAC TTTATAC - novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 TTTATAC TTTATAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . TAAAAATTTATAC 9 4 0.44 4 0 0 0 0 VPS4B 9525 mdanderson.org 37 18 61077568 61077568 + Missense_Mutation SNP T T A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_004869 exon3 c.A251T p.Q84L GGCTTCTGTGCTT 48 3 0.06 81 0 0 48 0 0.00 CYP4F8 11283 broad.mit.edu 37 19 15726757 15726758 + RNA INS - - GA novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . CYP4F8 . . . . TTCCTCTTCCCAC 19 7 0.37 12 0 0 64 0 0 CYP4F8 11283 broad.mit.edu 37 19 15726759 15726760 + RNA INS - - A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . CYP4F8 . . . . CCTCTTCCCACTC 18 7 0.39 12 0 0 64 0 0 CYP4F8 11283 broad.mit.edu 37 19 15726760 15726761 + RNA INS - - T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . CYP4F8 . . . . CTCTTCCCACTCA 17 7 0.41 12 0 0 64 0 0 ZNF296 162979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 45575017 45575017 + Missense_Mutation SNP C C G rs368413069 alternate_allele TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_145288 exon3 c.G1270C p.A424P TCTGGGCGCAGGC 47 11 0.23 49 0 0 86 22 0.26 CD3EAP 10849 mdanderson.org 37 19 45911458 45911458 + Missense_Mutation SNP C C T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_012099 exon3 c.C232T p.H78Y AAGCGGCACCGCT 41 3 0.07 43 0 0 102 1 0.01 TULP2 7288 mdanderson.org 37 19 49398749 49398749 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_003323 exon5 c.C223A p.P75T GGAAAGGGTTCCC 45 3 0.07 37 0 0 5 0 0.00 SCAF1 58506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50149824 50149824 + Silent SNP G G A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_021228 exon5 c.G303A p.V101V GCTGGTGAGTGTC 55 13 0.24 63 0 0 118 11 0.09 ADAM17 6868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 9661415 9661415 + Missense_Mutation SNP T T G novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_003183 exon8 c.A874C p.K292Q CAGGTTTTACCTC 141 41 0.29 121 0 0 73 29 0.40 LPIN1 23175 broad.mit.edu 37 2 11935590 11935590 + Silent SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . LPIN1 NM_001261428 exon15 c.G2010T p.P670P GCAACCGCCGCAG 250 6 0.02 294 0 0 99 83 0 0.00 CAD 790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 27455982 27455982 + Missense_Mutation SNP C C G novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_004341 exon19 c.C2965G p.L989V GATCGACTCTACT 98 27 0.28 97 0 0 165 61 0.37 . 0 broad.mit.edu 37 2 231434447 231434447 + RNA DEL G G - rs143142393 by1000genomes;alternate_allele TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . ACAGCTGGTTTTT 20 10 0.50 24 0 0 0 0 GFRA4 64096 mdanderson.org 37 20 3644039 3644039 + Missense_Mutation SNP C C T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_145762 exon1 c.G8A p.R3H AGGCAGCGGACCA 31 3 0.10 33 0 0 0 0 DTD1 92675 mdanderson.org 37 20 18724893 18724893 + Silent SNP G G A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 DTD1,caecum,carcinoma,+2,2 DTD1 NM_080820 exon5 c.G627A p.P209P GGAGCCGTAGCTC 40 3 0.08 40 0 0 2 2 82 0 0.00 CLDN14 23562 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 21 37833709 37833709 + Silent SNP G G A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 CLDN14,NS,carcinoma,0,1 CLDN14 NM_144492 exon3 c.C285T p.C95C GCAGGCGCAGGCT 63 5 0.08 49 1 0.0204081633 0 1 0 0 PIK3IP1 113791 broad.mit.edu 37 22 31685584 31685584 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . PIK3IP1 NM_001135911 exon4 c.C409A p.L137M CGGGCAGGGCGTT 95 4 0.04 79 0 0 20 24 0 0.00 IL2RB 3560 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 37540125 37540125 + Missense_Mutation SNP C C T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_000878 exon2 c.G88A p.G30S CCTCACCATTCAC 131 45 0.34 108 0 0 63 2 0.03 MST1R 4486 mdanderson.org 37 3 49940406 49940406 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001244937 exon1 c.C637A p.P213T AGCGTGGGCTGAA 32 3 0.09 49 0 0 21 0 0.00 HYAL2 8692 bcgsc.ca 37 3 50357082 50357082 + Missense_Mutation SNP C C T rs367865916 TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . HYAL2 NM_033158 exon3 c.G839A p.R280H TGGGTGCGAGCCA 50 4 0.08 76 0 0 31 267 1 0.00 MRPL3 11222 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 131220418 131220419 + Frame_Shift_Del DEL AC AC - novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 AC AC Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . MRPL3 NM_007208 exon2 c.234_235del p.78_79del CAGAGGACACAGT 184 47 0.26 212 0 0 32 192 0 0.00 SDHAP2 0 broad.mit.edu 37 3 195412436 195412440 + RNA DEL AAAGC AAAGC - novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 AAAGC AAAGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . TTTTGTAAAGCAA 6 2 0.33 5 0 0 41 0 0.00 HERC6 55008 hgsc.bcm.edu 37 4 89304513 89304513 + Nonsense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 HERC6_ENST00000264346,NS,carcinoma,0,2 HERC6_ENST00000264346 NM_017912 exon2 c.G340T p.E114X TTCAAGGAAATAA 80 4 0.05 109 0 0 0 2 31 0 0.00 ENPEP 2028 mdanderson.org 37 4 111397903 111397903 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001977 exon1 c.G333T p.E111D GTTGGAGGAGGAC 49 3 0.06 75 0 0 12 0 0.00 CDH18 1016 broad.mit.edu 37 5 19838939 19838939 + Missense_Mutation SNP T T C novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . CDH18 NM_001167667 exon3 c.A157G p.R53G ATCCCCTTTTGGG 73 3 0.04 96 0 0 561 2 0 0.00 LOC202181 0 broad.mit.edu 37 5 177099140 177099140 + RNA SNP T T A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . ACGATGTAATCCT 25 4 0.16 27 1 0.037037037 0 0 PHF3 23469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 64423074 64423074 + Nonsense_Mutation SNP C C T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_015153 exon15 c.C5590T p.Q1864X CCAGGTCAGCCAC 71 14 0.20 83 0 0 117 32 0.27 CCT6P1 0 broad.mit.edu 37 7 65226641 65226641 + RNA SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . . . . . TCTTGCGCAGAAT 154 4 0.03 96 1 0.0104166667 31 0 0.00 ZAN 7455 broad.mit.edu 37 7 100349994 100349994 + RNA SNP C C A rs221829 bycluster;byhapmap TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 ZAN_ENST00000542585,NS,carcinoma,0,6 ZAN . . . . ATCTCCCCAGAAA 128 8 0.06 77 2 0.025974026 658 6 18 0 0.00 PRKAR2B 5577 mdanderson.org 37 7 106685519 106685519 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_002736 exon1 c.G167T p.R56M AGGGCAGGACCTG 13 2 0.15 9 0 0 52 0 0.00 MOS 4342 bcgsc.ca;mdanderson.org 37 8 57025695 57025695 + Missense_Mutation SNP G G A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . MOS NM_005372 exon1 c.C847T p.R283W GCTGCCGCTCCCC 87 5 0.06 106 0 0 63 0 0 KIAA1429 25962 ucsc.edu 37 8 95538916 95538916 + Missense_Mutation SNP G G A novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . KIAA1429 NM_015496 exon8 c.C1556T p.A519V AAAAAAGCTTCCA 86 1 0.01 86 0 0 176 94 11 0.12 PHF2 5253 mdanderson.org 37 9 96438062 96438062 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_005392 exon20 c.G2823T p.L941F TAAGTTGTCCCAG 20 2 0.10 28 0 0 75 0 0.00 CCDC180 0 mdanderson.org 37 9 100092984 100092984 + Missense_Mutation SNP A A G rs201085376 TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 KIAA1529,caecum,carcinoma,0,4 KIAA1529 NM_020893 exon18 c.A2341G p.K781E GAGGAGAAGCTGG 21 3 0.14 16 0 0 0 4 2 0 0.00 SYTL5 94122 mdanderson.org 37 X 37966002 37966002 + Nonsense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001163334 exon11 c.G1378T p.E460X GGAGATGAAAAGA 113 5 0.04 91 0 0 56 0 0.00 ARHGAP4 393 mdanderson.org 37 X 153173197 153173197 + Missense_Mutation SNP G G T novel TCGA-S6-A8JW-01A-11D-A435-10 TCGA-S6-A8JW-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9534fce9-9120-43fd-9809-8cfd7c576dd4 c4268ca5-c111-4ee9-a0a0-1c493706c007 . . NM_001164741 exon23 c.C2947A p.P983T GCTTGGGGGTCGT 32 3 0.09 37 0 0 104 0 0.00