Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV AGRN 375790 mdanderson.org 37 1 984809 984809 + Missense_Mutation SNP G G A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_198576 exon25 c.G4492A p.V1498I GGCGGCGTACCCG 17 2 0.12 15 0 0 30 0 0.00 SMIM1 388588 mdanderson.org 37 1 3692413 3692413 + Silent SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001163724 exon4 c.C165T p.G55G GCTGGGCGGCGTG 49 3 0.06 46 0 0 19 0 0.00 PER3 8863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 7870564 7870564 + Missense_Mutation SNP G G C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_016831 exon12 c.G1435C p.E479Q TACATTGAGTCAA 122 39 0.32 111 0 0 14 4 0.29 BAI2 576 broad.mit.edu 37 1 32221746 32221746 + Missense_Mutation SNP G G C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 BAI2,NS,carcinoma,0,1 BAI2 NM_001703 exon4 c.C692G p.A231G GAGCCGGCCCCCG 54 17 0.31 71 21 0.2957746479 128 1 3 0 0.00 CLDN19 149461 mdanderson.org 37 1 43201580 43201580 + Missense_Mutation SNP A A G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001123395 exon4 c.T595C p.Y199H GCCGATAGGGCTG 44 3 0.07 69 0 0 26 0 0.00 CYP4Z2P 0 broad.mit.edu 37 1 47325179 47325179 + RNA SNP C C A rs112740312 byfrequency TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . AGCTCTCTCCTCT 64 5 0.08 52 1 0.0192307692 0 0 CYP4Z2P 0 broad.mit.edu 37 1 47325212 47325212 + RNA SNP G G A rs71645846 TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . AGAATGGCCCTAG 93 5 0.05 82 1 0.012195122 0 0 LPHN2 23266 broad.mit.edu 37 1 82433827 82433827 + Missense_Mutation SNP T T C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 LPHN2_ENST00000370725,NS,carcinoma,0,2 LPHN2 NM_012302 exon12 c.T2416C p.C806R ACAACGTGTGCAT 132 5 0.04 149 0 0 464 2 18 2 0.11 rescued with RNA-seq . 100288142 ucsc.edu 37 1 148346633 148346633 + Missense_Mutation SNP A A T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . CAAAACATCTCTC 26 6 0.23 19 3 0.1578947368 4 3 0.75 HRNR 388697 broad.mit.edu 37 1 152188602 152188604 + In_Frame_Del DEL GTC GTC - novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 GTC GTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . HRNR NM_001009931 exon3 c.5501_5503del p.1834_1835del ACCCATGTCGGCC 553 12 0.02 592 0 0 403 2 0 0.00 PEX19 5824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160254906 160254906 + Silent SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_002857 exon1 c.C9A p.A3A CTCAGCGGCGGCC 53 14 0.26 69 0 0 34 7 0.21 RGS1 5996 mdanderson.org 37 1 192544965 192544965 + Missense_Mutation SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 RGS1_ENST00000367459,NS,carcinoma,-1,2 RGS1_ENST00000367459 NM_002922 exon1 c.C43T p.P15S AAAATGCCAGGAA 113 5 0.04 107 0 0 -1 2 28 0 0.00 . 337872 bcgsc.ca 37 1 228651817 228651817 + RNA SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . CCAATTGAATCAC 31 8 0.26 41 0 0 6 2 0.33 SIPA1L2 57568 mdanderson.org 37 1 232561342 232561342 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_020808 exon16 c.C4623A p.S1541R TCTCAGGCTCCCC 37 3 0.08 36 0 0 188 0 0.00 AKR1C4 1109 hgsc.bcm.edu 37 10 5242213 5242213 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001818 exon2 c.G154T p.A52S GATTCTGCTTATT 105 5 0.05 105 0 0 0 0 . 0 bcgsc.ca 37 10 79493285 79493285 + RNA SNP G G A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . CCCCAAGCACACA 88 17 0.19 75 0 0 0 0 ABCC2 1244 hgsc.bcm.edu;mdanderson.org 37 10 101563999 101563999 + Missense_Mutation SNP C C T rs201399138 TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 ABCC2,NS,carcinoma,0,2 ABCC2 NM_000392 exon10 c.C1433T p.A478V TTAATGCGATACT 80 4 0.05 102 0 0 0.001 0 2 1 0 0.00 C10orf2 56652 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 102753124 102753124 + Missense_Mutation SNP C C G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_021830 exon5 c.C1912G p.L638V GCCCGGCTCAAGA 134 46 0.34 111 0 0 203 70 0.34 OR52I2 143502 broad.mit.edu;mdanderson.org 37 11 4608061 4608061 + Missense_Mutation SNP C C T rs200571706 bycluster TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 OR52I2,caecum,carcinoma,0,1 OR52I2 NM_001005170 exon1 c.C19T p.R7W ATCTTACGGGATT 68 4 0.06 94 0 0 50 1 0 0 ABTB2 25841 mdanderson.org 37 11 34186251 34186251 + Nonsense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_145804 exon9 c.C1970A p.S657X GCAGCTGAGTGGC 47 3 0.06 70 0 0 1 0 0.00 PHF21A 51317 mdanderson.org 37 11 45955621 45955621 + Silent SNP C C T rs199802844 bycluster;by1000genomes TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001101802 exon18 c.G1941A p.P647P GCAGTCCGGGCCA 42 3 0.07 61 0 0 0.001 93 0 0.00 MAP3K11 4296 mdanderson.org 37 11 65380778 65380778 + Silent SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_002419 exon1 c.C450A p.P150P CTCATCGGGGTCC 42 3 0.07 72 0 0 60 0 0.00 KRTAP5-7 440050 ucsc.edu 37 11 71238418 71238418 + Silent SNP T T C rs201675734 bycluster;byfrequency TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . KRTAP5-7 NM_001012503 exon1 c.T72C p.C24C GGGCTGTGGCTCT 118 25 0.21 156 13 0.0833333333 23 0 0 KIAA1731 85459 mdanderson.org 37 11 93433165 93433165 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_033395 exon15 c.G5087T p.S1696I TTTTGAGTTTTTC 49 3 0.06 91 0 0 17 0 0.00 BUD13 84811 mdanderson.org 37 11 116633328 116633328 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_032725 exon4 c.C977A p.P326H CGTGGAGGAGAGA 48 3 0.06 111 0 0 32 0 0.00 VWA5A 4013 mdanderson.org 37 11 123988930 123988930 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_014622 exon4 c.G281T p.G94V CCCAGGGCCACCA 69 5 0.07 171 0 0 5 0 0.00 GLB1L2 89944 mdanderson.org 37 11 134238570 134238570 + Missense_Mutation SNP G G T rs148929536 byfrequency;alternate_allele TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_138342 exon10 c.G922T p.A308S GTGGACGCCGGCT 17 2 0.12 68 0 0 11 0 0.00 ITPR2 3709 broad.mit.edu 37 12 26640046 26640046 + Frame_Shift_Del DEL T T - novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . ITPR2 NM_002223 exon40 c.5509delA p.R1837fs CGTCCCTTTTTTT 1267 7 0.01 140 0 0 270 94 0 0.00 ARNTL2 56938 broad.mit.edu 37 12 27543058 27543058 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . ARNTL2 NM_020183 exon9 c.G805T p.A269S CTCCACGCTGGAA 1142 6 0.01 125 0 0 54 422 0 0.00 DDX11 1663 broad.mit.edu 37 12 31238044 31238044 + Frame_Shift_Del DEL A A - novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . DDX11 NM_030653 exon5 c.622delA p.K208fs GAGGAGAAAAAGG 1932 8 0.00 307 0 0 188 1067 0 0.00 FAM186A 121006 mdanderson.org 37 12 50748635 50748635 + Silent SNP T T C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001145475 exon4 c.A1980G p.P660P GCCATCTGGACTT 44 3 0.07 59 0 0 1 0 0.00 CPSF6 11052 mdanderson.org 37 12 69653285 69653285 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_007007 exon7 c.G1277T p.S426I TCTCAAGCAGTGC 49 3 0.06 50 0 0 339 0 0.00 . 0 broad.mit.edu 37 12 70508234 70508236 + RNA DEL ACA ACA - rs76660044 alternate_allele TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 ACA ACA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . ATAGCTACAACAA 7 7 1.00 4 0 0 0 0 DDX54 79039 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113617043 113617043 + Missense_Mutation SNP G G A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 DDX54,NS,carcinoma,0,1 DDX54 NM_024072 exon4 c.C469T p.R157W TGAGCCGCTCGAA 66 19 0.29 68 0 0 0 1 231 83 0.36 FKBP3 2287 bcgsc.ca 37 14 45590789 45590789 + Missense_Mutation SNP T T C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . FKBP3 NM_002013 exon4 c.A353G p.K118R TCTCCCTTTTTCA 40 4 0.10 71 0 0 21 301 0 0.00 ZFYVE26 23503 mdanderson.org 37 14 68221866 68221866 + Missense_Mutation SNP C C A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_015346 exon37 c.G6888T p.K2296N GTGGTCCTTGGCC 60 5 0.08 119 1 0.0084033613 83 0 0.00 MGA 23269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42003218 42003218 + Missense_Mutation SNP T T G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001080541 exon8 c.T2755G p.L919V TCCATTTTACCAT 117 28 0.24 86 0 0 28 6 0.21 KIAA1199 57214 broad.mit.edu 37 15 81217004 81217004 + Missense_Mutation SNP T T C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . KIAA1199 NM_018689 exon17 c.T2245C p.S749P GAGGCCTCTGCCA 125 5 0.04 92 0 0 118 0 0 RHBDF1 64285 mdanderson.org 37 16 109430 109430 + Missense_Mutation SNP G G A rs375953787 TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_022450 exon15 c.C1880T p.T627M CAGAGCGTGGCCT 48 3 0.06 62 0 0 56 0 0.00 HAGH 3029 mdanderson.org 37 16 1859331 1859331 + Missense_Mutation SNP G G A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 HAGH,bladder,carcinoma,+1,1 HAGH NM_005326 exon9 c.C880T p.R294W CGGCCCGCATGGT 36 3 0.08 32 0 0 1 1 149 0 0.00 CASKIN1 57524 mdanderson.org 37 16 2231335 2231335 + Silent SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_020764 exon18 c.C2034A p.P678P GCTGGAGGGCTTC 26 3 0.12 29 0 0 28 0 0.00 ATXN2L 11273 mdanderson.org 37 16 28846413 28846413 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_148416 exon19 c.G2468T p.R823L ACCCACGCATGCT 55 3 0.05 51 0 0 846 0 0.00 . 0 bcgsc.ca 37 16 32914986 32914986 + RNA SNP G G A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . TCTCCTGTGCAGC 7 5 0.71 22 0 0 8 0 0.00 . 440348 bcgsc.ca 37 16 74425793 74425793 + Missense_Mutation SNP T T C rs199839508 bycluster TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . GAACAATCGCCCA 277 18 0.06 305 9 0.0295081967 150 0 0.00 ANKRD11 29123 mdanderson.org 37 16 89341536 89341536 + Silent SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_013275 exon10 c.C7534A p.R2512R TTCCCCGGACGGC 43 3 0.07 44 0 0 277 0 0.00 NLRP1 22861 mdanderson.org 37 17 5436697 5436697 + Silent SNP C C A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_014922 exon10 c.G3060T p.A1020A GGAAGCCGCCCTC 34 3 0.09 30 0 0 20 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 145 6 0.04 191 13 0.0680628272 155 92 0.59 MPRIP 23164 mdanderson.org 37 17 17079783 17079783 + Missense_Mutation SNP A A G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_015134 exon20 c.A2753G p.Q918R TGAAACAGGAGAT 33 3 0.09 35 0 0 163 0 0.00 LRRC37B 114659 mdanderson.org 37 17 30349013 30349013 + Missense_Mutation SNP A A G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_052888 exon1 c.A848G p.E283G AGGAAGAAGCCCC 42 3 0.07 51 0 0 22 0 0.00 TCF3 6929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1612333 1612333 + Missense_Mutation SNP A A C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001136139 exon17 c.T1686G p.I562M CTCGTTAATATCC 145 39 0.27 157 0 0 124 68 0.55 MYO9B 4650 mdanderson.org 37 19 17316915 17316915 + Silent SNP G G T rs367648233 alternate_allele TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001130065 exon32 c.G5211T p.S1737S CAAGTCGGGTGCT 43 3 0.07 50 0 0 112 0 0.00 ANKLE1 126549 broad.mit.edu 37 19 17397500 17397501 + Frame_Shift_Del DEL TT TT - rs10606406 alternate_allele TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 TT TT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . ANKLE1 . . . . TGTGTGTTTGTGT 14 13 0.93 13 0 0 27 4 0 0.00 C19orf54 284325 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 41250532 41250532 + Missense_Mutation SNP A A G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . C19orf54 NM_198476 exon3 c.T449C p.V150A AGGGGGACGCCAC 74 4 0.05 77 1 0.012987013 13 91 0 0.00 MYH14 79784 mdanderson.org 37 19 50760599 50760599 + Silent SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001145809 exon18 c.C2088T p.D696D GGGCGACGGCCCA 44 3 0.07 44 0 0 36 0 0.00 SHANK1 50944 mdanderson.org 37 19 51172415 51172415 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 SHANK1,NS,carcinoma,-1,1 SHANK1 NM_016148 exon22 c.C2802A p.S934R AGGTGTGCTGTAG 19 2 0.11 35 0 0 -1 1 2 0 0.00 ZNF606 80095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58490600 58490600 + Missense_Mutation SNP G G C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_025027 exon7 c.C1448G p.P483R ACATAAGGTTTTT 71 11 0.15 79 0 0 43 19 0.44 . 400986 bcgsc.ca 37 2 96525702 96525702 + Missense_Mutation SNP C C T rs71255701 TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . AGTACACTAGCCT 112 8 0.07 106 3 0.0283018868 7 0 0.00 NMS 129521 bcgsc.ca;mdanderson.org 37 2 101095866 101095866 + Missense_Mutation SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . NMS NM_001011717 exon6 c.C313T p.R105W AACAGGCGGATGA 102 5 0.05 93 0 0 26 0 0 INHBB 3625 broad.mit.edu 37 2 121106822 121106822 + Missense_Mutation SNP T T C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . INHBB NM_002193 exon2 c.T596C p.V199A TGCGGGTCAAAGT 134 5 0.04 154 0 0 29 1 0 0.00 ANKRD30BL 554226 broad.mit.edu 37 2 132919099 132919099 + Silent SNP C C T rs199974298 bycluster TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . ANKRD30BL . . . . TGTCGTCTTCTTC 74 7 0.09 70 0 0 36 0 0 ANKRD30BL 554226 broad.mit.edu 37 2 132919171 132919171 + Silent SNP A A G rs199695856 bycluster TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . ANKRD30BL . . . . ATCCCCATGGTGA 138 9 0.07 153 1 0.0065359477 36 0 0 ANKRD30BL 554226 broad.mit.edu 37 2 132919192 132919192 + Silent SNP G G A rs111295191 bycluster TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . ANKRD30BL . . . . AGAGTCGTTGTTG 133 6 0.05 180 2 0.0111111111 36 0 0 USP40 55230 hgsc.bcm.edu 37 2 234394246 234394246 + Silent SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 USP40_ENST00000450966,NS,carcinoma,0,2 USP40_ENST00000450966 NM_018218 exon29 c.G3468A p.K1156K TTTTTTCTTTTTC 183 9 0.05 161 1 0.0062111801 0 2 26 0 0.00 PYGB 5834 mdanderson.org 37 20 25277029 25277029 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_002862 exon20 c.G2403T p.K801N CAAGAAGGTCATC 49 3 0.06 66 0 0 934 1 0.00 FAM182B 0 broad.mit.edu 37 20 25755549 25755549 + Missense_Mutation SNP C C A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 FAM182B,colon,carcinoma,0,1 FAM182B . . . . CTGCAGCCTTCCT 48 3 0.06 81 0 0 6 1 45 5 0.11 CDH22 64405 mdanderson.org 37 20 44815231 44815231 + Silent SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 CDH22,NS,carcinoma,0,1 CDH22 NM_021248 exon10 c.C1659A p.I553I ACCTTGGATGTCA 44 3 0.07 63 0 0 0 1 0 0 APCDD1L 164284 mdanderson.org 37 20 57042182 57042182 + Missense_Mutation SNP G G A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_153360 exon3 c.C721T p.R241C GCGGGCGCTGGTA 29 3 0.10 29 0 0 0 0 NEFH 4744 hgsc.bcm.edu 37 22 29885638 29885638 + Missense_Mutation SNP T T A rs190692435 bycluster TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 NEFH,NS,lymphoid_neoplasm,0,1 NEFH NM_021076 exon4 c.T2009A p.V670E CCCCAGTGAAGGC 229 12 0.05 169 0 0 0 1 727 18 0.02 DEPDC5 9681 bcgsc.ca;mdanderson.org 37 22 32193622 32193622 + Silent SNP T T C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . DEPDC5 NM_001242897 exon13 c.T804C p.T268T ATGGACTTCACTT 94 5 0.05 92 0 0 266 22 0 0.00 IL17REL 400935 broad.mit.edu;mdanderson.org 37 22 50438258 50438258 + Splice_Site SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . IL17REL NM_001001694 exon7 c.G473A p.R158Q CTCACTCGCACAG 33 5 0.15 34 0 0 21 0 0 MST1 4485 ucsc.edu 37 3 49725038 49725038 + Silent SNP G G C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . MST1 NM_020998 exon3 c.C306G p.P102P CGTGTGGGGCGAG 86 16 0.19 100 3 0.03 84 24 0 0.00 MST1 4485 ucsc.edu;bcgsc.ca 37 3 49725086 49725086 + Silent SNP G G A rs201833731 bycluster;byfrequency TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . MST1 NM_020998 exon3 c.C258T p.N86N GCTCACGTTGTAG 74 13 0.18 87 2 0.0229885057 84 31 0 0.00 SLC12A8 84561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 124909295 124909295 + Missense_Mutation SNP G G C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_024628 exon3 c.C122G p.T41S TCCCAGGTCCCAA 223 54 0.24 255 0 0 12 3 0.25 AMOTL2 51421 ucsc.edu;bcgsc.ca 37 3 134080365 134080365 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . AMOTL2 NM_016201 exon6 c.C1564A p.R522S GTGCACGCAGGGC 37 4 0.11 55 0 0 52 16 0 0.00 MUC4 4585 mdanderson.org 37 3 195509071 195509071 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_018406 exon2 c.C9380A p.S3127Y GCTGAGGAAGTGT 43 7 0.16 54 2 0.037037037 1 0 0.00 FIP1L1 81608 hgsc.bcm.edu 37 4 54257228 54257228 + Silent SNP A A G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_030917 exon8 c.A558G p.K186K CTGGAAAGCTTAC 365 85 0.23 186 0 0 224 0 0.00 BMP3 651 mdanderson.org 37 4 81967030 81967030 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001201 exon2 c.G455T p.C152F GAGGATGCTCCCA 49 3 0.06 60 0 0 0 0 LECT2 3950 mdanderson.org 37 5 135287021 135287021 + Nonsense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_002302 exon3 c.C180A p.C60X AGCAGAGCACAAG 51 3 0.06 71 0 0 9 0 0.00 PCDHGA2 56113 mdanderson.org 37 5 140720516 140720516 + Missense_Mutation SNP C C T rs61742830 byfrequency;alternate_allele TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_032009 exon1 c.C1978T p.L660F GTCACGCTCACCG 49 2 0.04 76 0 0 12 0 0.00 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 12121882 12121883 + Frame_Shift_Del DEL TA TA - novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 TA TA Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 HIVEP1,NS,carcinoma,0,1 HIVEP1 NM_002114 exon4 c.1853_1854del p.618_618del GGAGACTAATGAG 90 26 0.29 80 0 0 242 10 1 0.10 SIRT5 23408 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 13588626 13588626 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_012241 exon4 c.G179T p.G60V GAGCTGGTGTTAG 152 43 0.28 146 0 0 83 23 0.28 SLC17A4 10050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 25777039 25777039 + Splice_Site SNP G G A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 SLC17A4,NS,carcinoma,-1,1 SLC17A4 NM_005495 exon10 c.1121-1G>A . ACCCCAGGGGTTC 104 31 0.30 116 0 0 -1 1 0 0 HLA-H 3136 hgsc.bcm.edu 37 6 29857993 29857993 + RNA SNP T T A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . . . . . ACCTTATGGCCCT 54 6 0.11 54 0 0 3 3 1.00 MUC21 394263 broad.mit.edu 37 6 30954534 30954534 + Silent SNP T T A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 MUC21,NS,carcinoma,0,3 MUC21 NM_001010909 exon2 c.T582A p.T194T CAGCACTGCCACC 48 5 0.10 41 2 0.0487804878 98 3 26 0 0.00 GTPBP2 54676 mdanderson.org 37 6 43592665 43592665 + Silent SNP G G T rs143185915 alternate_allele TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_019096 exon6 c.C840A p.P280P GCAGTCGGGGCAG 48 3 0.06 81 0 0 224 0 0.00 NYAP1 222950 mdanderson.org 37 7 100086571 100086571 + Silent SNP G G A novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_173564 exon4 c.G1227A p.P409P GACACCGTTGCCA 31 3 0.10 22 0 0 20 0 0.00 RELN 5649 mdanderson.org 37 7 103275912 103275912 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_005045 exon19 c.C2425A p.L809I CCAGGAGTTTCCA 43 3 0.07 31 0 0 1 0 0.00 CPSF1 29894 mdanderson.org 37 8 145622524 145622524 + Silent SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_013291 exon23 c.C2490A p.G830G GGCCTCGCCCTGT 38 4 0.11 51 0 0 229 0 0.00 FOCAD 54914 mdanderson.org 37 9 20948910 20948910 + Nonsense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_017794 exon34 c.G3859T p.E1287X GGCTCTGAAGGGG 43 3 0.07 75 0 0 97 0 0.00 CRB2 286204 mdanderson.org 37 9 126125220 126125220 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_173689 exon2 c.G171T p.E57D TACCGAGAGTGGT 38 3 0.08 57 0 0 0 0 TRUB2 26995 mdanderson.org 37 9 131073824 131073824 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_015679 exon6 c.C517A p.Q173K CCTTCTGATGGGA 49 3 0.06 99 0 0 120 0 0.00 RAPGEF1 2889 mdanderson.org 37 9 134503405 134503405 + Missense_Mutation SNP A A G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_198679 exon9 c.T1099C p.S367P AGGGGGAGAGGCG 23 2 0.09 34 0 0 122 0 0.00 TLR7 51284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 12904184 12904184 + Missense_Mutation SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_016562 exon3 c.G557T p.R186L ATTATCGAAATCC 92 40 0.43 82 0 0 2 0 0.00 GNL3L 54552 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 54584946 54584946 + Silent SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001184819 exon15 c.C1524T p.R508R CCACCGCCCTAAG 111 36 0.32 80 0 0 55 24 0.44 TAF7L 54457 mdanderson.org 37 X 100533046 100533046 + Missense_Mutation SNP C C T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_024885 exon8 c.G826A p.V276I TACTTACGGCTTC 41 3 0.07 29 0 0 0 0 GLA 2717 broad.mit.edu;mdanderson.org 37 X 100653456 100653456 + Missense_Mutation SNP G G C novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . GLA NM_000169 exon6 c.C901G p.R301G TGTGTCGGAGGTC 54 4 0.07 52 0 0 43 97 4 0.04 BRS3 680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135572573 135572573 + Missense_Mutation SNP T T G novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_001727 exon2 c.T716G p.L239W ATTCCTTGATTGC 64 21 0.33 55 0 0 0 0 GABRE 2564 mdanderson.org 37 X 151123960 151123960 + Silent SNP G G T novel TCGA-S6-A8JY-01A-11D-A435-10 TCGA-S6-A8JY-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dbd6c3e-58fc-49e3-a94a-edf53c841181 8ba463e3-b477-4c63-9649-3e10bb8b1704 . . NM_004961 exon8 c.C1017A p.A339A ATCCAAGGCTGTG 39 3 0.08 34 0 0 5 0 0.00