Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV C1orf170 84808 bcgsc.ca 37 1 915450 915450 + Silent SNP G G A novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . C1orf170 . . . . CGGCTCGGAGGCA 109 8 0.07 130 0 0 5 0 0 . 284498 bcgsc.ca 37 1 11832311 11832311 + Silent SNP G G C rs10779764 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTGGCTGTGCAGG 277 12 0.04 308 3 0.0097402597 0 0 . 284498 bcgsc.ca 37 1 11836682 11836682 + Missense_Mutation SNP C C T rs7538516 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTCCAGCGCCAGT 221 12 0.05 259 1 0.0038610039 0 0 . 284498 bcgsc.ca 37 1 11838848 11838848 + Missense_Mutation SNP G G T rs6697244 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCAGCAGCACACT 281 13 0.05 297 0 0 0 0 . 284498 bcgsc.ca;mdanderson.org 37 1 11844330 11844330 + Silent SNP C C T rs10864543 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGGGGCCGTGTTT 158 13 0.08 196 0 0 2 0 0.00 . 0 bcgsc.ca 37 1 12898512 12898512 + RNA SNP G G T rs116549626 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CGTGGAGGTCTCA 155 10 0.06 241 2 0.0082987552 0 0 . 0 bcgsc.ca 37 1 12898517 12898517 + RNA SNP C C G rs72472679 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGGTCTCATTTCC 157 10 0.06 227 0 0 0 0 . 0 bcgsc.ca 37 1 12898551 12898551 + RNA SNP A A G rs117657781 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTGGGAACAGTGG 174 11 0.06 219 1 0.00456621 0 0 . 0 bcgsc.ca 37 1 13172124 13172124 + RNA SNP C C G rs75049200 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TACTGTCTGGGTA 539 46 0.09 624 3 0.0048076923 0 0 PRAMEF19 391003 bcgsc.ca;mdanderson.org 37 1 13474974 13474974 + Silent SNP G G A rs4462137 bycluster TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . PRAMEF19 NM_001099790 exon3 c.C1155T p.H385H ATTGCCGTGAAAG 930 40 0.04 1083 0 0 6 0 0 . 780789 bcgsc.ca 37 1 14507057 14507057 + Missense_Mutation SNP A A G rs10928050 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CATGATATTGATG 370 17 0.05 466 0 0 0 0 FAM46B 115572 bcgsc.ca 37 1 27332465 27332466 + Missense_Mutation DNP GT GT AC novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 GT GT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . FAM46B NM_052943 exon2 c.A1247G p.H416R ATAGGCGTGAGCC 206 17 0.08 319 4 0.012539185 44 745 0 0.00 . 0 bcgsc.ca 37 1 59097172 59097172 + RNA SNP C C T rs232916 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GACACTCGGGTTC 251 23 0.09 270 1 0.0037037037 1 0 0.00 . 0 bcgsc.ca 37 1 65450611 65450611 + RNA SNP C C T rs61734444 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTTCAGCCACAAT 63 5 0.08 53 0 0 0 0 . 100505741 bcgsc.ca 37 1 85009894 85009894 + RNA SNP A A G rs12143652 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a SPATA1,NS,carcinoma,0,1 . . . . . GCTGAAAAAGAGT 230 11 0.05 262 0 0 1 2 0 0.00 . 0 bcgsc.ca 37 1 100797449 100797449 + RNA SNP A A T rs614766 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAGGCCATCACGC 236 12 0.05 246 0 0 0 0 . 0 bcgsc.ca 37 1 100797473 100797473 + RNA SNP T T C rs614805 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTGAACTAGAAGA 211 11 0.05 222 3 0.0135135135 0 0 NOTCH2NL 388677 broad.mit.edu 37 1 145273262 145273263 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a NOTCH2NL_ENST00000362074,caecum,carcinoma,+1,7 NOTCH2NL NM_203458 exon3 c.116_117insT p.T39fs GTGGGACTTGTGT 1319 6 0.00 1189 0 0 100 7 80 0 0.00 RPTN 126638 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 152127944 152127944 + Missense_Mutation SNP C C A novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . RPTN NM_001122965 exon3 c.G1631T p.S544I TGGGAACTCTGGC 263 22 0.08 160 1 0.00625 123 0 0 . 0 bcgsc.ca 37 1 157679691 157679691 + RNA SNP C C T rs17676303 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGATGCCTGGGCT 313 30 0.10 263 1 0.0038022814 49 0 0.00 . 0 bcgsc.ca 37 1 157679783 157679783 + RNA SNP A A G rs17727309 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTGCCCAACCTGG 375 23 0.06 280 0 0 5 0 0.00 . 0 bcgsc.ca 37 1 160865612 160865612 + RNA SNP A A C rs112211905 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTTCCAATCTCCA 273 25 0.09 237 0 0 191 0 0.00 . 441915 bcgsc.ca 37 1 172718250 172718250 + RNA SNP C C T rs184779733 by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGGCACCGGGGCC 113 5 0.04 77 0 0 1 0 0.00 . 646891 bcgsc.ca 37 1 175013936 175013936 + RNA SNP T T A rs3737935 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CACCACTGTCAGG 155 10 0.06 115 1 0.0086956522 1 0 0.00 . 0 bcgsc.ca 37 1 192216349 192216349 + RNA SNP T T G rs139697927 by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTTTCATGTAGTA 381 19 0.05 353 1 0.0028328612 4 0 0.00 . 0 bcgsc.ca 37 1 192216500 192216500 + RNA SNP C C A rs1175146 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTTCCCCCAGCAT 202 8 0.04 210 0 0 4 0 0.00 HHAT 55733 hgsc.bcm.edu;bcgsc.ca 37 1 210577807 210577807 + Splice_Site SNP G G C novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . NM_001122834 exon6 c.469-1G>C . TTTGTAGAGAAGG 94 7 0.07 116 0 0 0 0 LYPLAL1 127018 ucsc.edu 37 1 219347266 219347266 + Missense_Mutation SNP T T C novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . LYPLAL1 NM_138794 exon1 c.T34C p.C12R CAGCGCTGTATCG 46 4 0.09 36 0 0 17 93 0 0.00 OBSCN 84033 ucsc.edu;bcgsc.ca 37 1 228412227 228412228 + Missense_Mutation DNP TG TG CA novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 TG TG Unknown Untested Somatic WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . OBSCN NM_001271223 exon10 c.G2998A p.A908T AGCCAGTGCCACA 151 16 0.11 127 1 0.0078740157 2142 2 0 0.00 . 0 bcgsc.ca 37 1 240136251 240136251 + RNA SNP C C G rs4659558 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CACTGGCCGACTG 42 4 0.10 48 0 0 0 0 . 0 broad.mit.edu;ucsc.edu 37 1 246939513 246939513 + RNA SNP G G A rs3795467 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGTTGCGCAGTCA 109 11 0.10 110 1 0.0090909091 0 0 . 0 bcgsc.ca 37 1 246942159 246942159 + Silent SNP G G A rs7512440 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTTGACGCCAAGG 143 9 0.06 137 1 0.0072992701 0 0 . 81458 bcgsc.ca 37 1 248605395 248605395 + RNA SNP T T G rs28631666 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGTTGTTGGGAGG 146 12 0.08 157 0 0 0 0 . 0 bcgsc.ca 37 10 30986348 30986348 + RNA SNP G G A rs4749588 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGCTTCGGCGCTC 62 5 0.08 54 0 0 2 0 0.00 . 143341 bcgsc.ca 37 10 43062433 43062433 + RNA SNP G G A rs210224 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GATGCTGCGCATG 71 5 0.07 88 0 0 57 0 0.00 FAM21C 253725 bcgsc.ca;mdanderson.org 37 10 46245557 46245557 + Missense_Mutation SNP T T C rs190175456 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . FAM21C NM_015262 exon9 c.T746C p.M249T CACAAATGAGTGA 610 22 0.04 691 0 0 68 18 0 0.00 . 0 bcgsc.ca 37 10 79492768 79492768 + RNA SNP T T C rs12782219 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGGAGCTGGCACA 193 10 0.05 270 1 0.0037037037 2 0 0.00 . 0 bcgsc.ca 37 10 79492827 79492827 + RNA SNP C C A rs12780841 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CGGCTCCTTTAAG 195 9 0.05 246 0 0 1 0 0.00 . 0 bcgsc.ca 37 10 79492970 79492970 + RNA SNP C C T rs12761718 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CAGATACACGTGG 80 5 0.06 85 0 0 0 0 BMPR1A 657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 88676951 88676951 + Missense_Mutation SNP G G A novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a BMPR1A_ENST00000224764,NS,carcinoma,0,2 BMPR1A_ENST00000224764 NM_004329 exon9 c.G736A p.G246R CGATATGGAGAAG 232 21 0.09 206 1 0.0048543689 0 2 5 1 0.20 . 340970 bcgsc.ca 37 11 49010832 49010832 + RNA SNP A A G rs10431006 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTCAGCATGTGCA 623 23 0.04 834 1 0.0011990408 0 0 . 0 bcgsc.ca 37 11 49329521 49329521 + RNA SNP T T C rs1164671 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGGTCATAAGTCA 209 10 0.05 199 1 0.0050251256 1 0 0.00 . 401696 bcgsc.ca 37 11 59259846 59259846 + RNA SNP C C T rs3862659 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTGCACCTCCCA 85 5 0.06 81 0 0 0 0 . 0 bcgsc.ca 37 11 62815424 62815424 + RNA SNP C C T rs7126542 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTGCCCGGGCCA 39 5 0.13 49 0 0 0 0 INTS4 92105 broad.mit.edu 37 11 77635831 77635832 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . INTS4 NM_033547 exon12 c.1479_1480insT p.L493fs CTTGGTTAAATTT 395 6 0.02 603 0 0 89 19 0 0.00 ARHGAP42 143872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 100814536 100814536 + Missense_Mutation SNP G G C novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . NM_152432 exon10 c.G980C p.C327S AATCTTGTATCCG 74 14 0.19 123 0 0 15 13 0.87 NCAM1 4684 hgsc.bcm.edu 37 11 113078059 113078059 + Silent SNP C C T rs376337341 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a NCAM1_ENST00000401611,NS,carcinoma,0,3 NCAM1_ENST00000401611 NM_001242608 exon7 c.C705T p.C235C GGTGTGCGATGCC 69 4 0.06 82 0 0 0 3 0 0 AKAP3 10566 bcgsc.ca 37 12 4735968 4735969 + Missense_Mutation DNP AG AG CA novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 AG AG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . AKAP3 NM_006422 exon4 c.C2099T p.S700L ATCTCCAGACTTG 175 8 0.05 122 0 0 212 9 0 0.00 ANO2 57101 broad.mit.edu 37 12 5841706 5841707 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . ANO2 NM_020373 exon15 c.1525_1526insC p.T509fs CCGTCGTGTTTGT 139 7 0.05 91 0 0 309 6 0 0.00 . 0 bcgsc.ca 37 12 6587668 6587668 + RNA SNP C C G rs7301945 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCAGGGCTCACCG 60 10 0.17 33 1 0.0303030303 2 0 0.00 . 0 bcgsc.ca 37 12 7757084 7757084 + RNA SNP T T C rs11054742 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GATTTTTGTCTCT 43 9 0.21 30 0 0 4 0 0.00 CPNE8 144402 broad.mit.edu 37 12 39118673 39118673 + Frame_Shift_Del DEL T T - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . CPNE8 NM_153634 exon12 c.827delA p.K276fs TTTTTCTTTTTTC 1131 7 0.01 1160 0 0 66 2 0 0.00 . 283463 bcgsc.ca;mdanderson.org 37 12 40821867 40821867 + Missense_Mutation SNP G G A rs7958987 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGAGAAGTCCGAG 251 15 0.06 229 3 0.0131004367 0 0 . 283463 bcgsc.ca 37 12 40832126 40832126 + Silent SNP C C T rs10878584 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CATAAACGACGAG 107 8 0.07 104 0 0 0 0 . 283463 bcgsc.ca 37 12 40834376 40834376 + Missense_Mutation SNP C C G rs10878592 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTCCAGCGTCTGT 494 35 0.07 508 1 0.0019685039 0 0 . 283463 bcgsc.ca;mdanderson.org 37 12 40835734 40835734 + Missense_Mutation SNP C C G rs7966110 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCACATCTATGGG 229 18 0.08 285 0 0 0 0 . 283463 bcgsc.ca;mdanderson.org 37 12 40838216 40838216 + Missense_Mutation SNP T T C rs10784621 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATGATGTGTGCAT 201 13 0.06 213 0 0 0 0 . 283463 bcgsc.ca 37 12 40840325 40840325 + Silent SNP T T C rs10878597 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTTACTTGGATG 195 10 0.05 231 1 0.0043290043 0 0 . 283463 bcgsc.ca 37 12 40857943 40857943 + Missense_Mutation SNP A A C rs2933353 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTGGAGAAACCCC 137 5 0.04 113 0 0 0 0 . 283463 bcgsc.ca 37 12 40951596 40951596 + Silent SNP A A G rs3751167 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTTTCCACTTTTC 198 14 0.07 208 0 0 0 0 . 283463 bcgsc.ca 37 12 40951605 40951605 + Silent SNP G G A rs3751168 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTTCTTGATTTGC 209 14 0.07 211 1 0.0047393365 0 0 . 0 bcgsc.ca 37 12 43965108 43965108 + RNA SNP T T A rs11611126 bycluster;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTCCAATACAGTT 137 8 0.06 148 3 0.0202702703 0 0 DYRK2 8445 hgsc.bcm.edu 37 12 68051843 68051844 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a DYRK2,NS,carcinoma,0,1 DYRK2 NM_006482 exon3 c.1156_1157insG p.R386fs CAGTCGCGTTTTT 131 11 0.08 114 0 0 63 34 0 0.00 . 144453 bcgsc.ca;mdanderson.org 37 12 70037520 70037520 + Missense_Mutation SNP G G A rs61747221 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGGAGTGGGATTT 200 13 0.07 243 0 0 0 0 TRAFD1 10906 broad.mit.edu 37 12 112589651 112589652 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . TRAFD1 NM_001143906 exon10 c.1326_1327insA p.A442fs AACAGCTAATGGG 385 6 0.02 364 0 0 42 113 0 0.00 NCOR2 9612 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 124887093 124887093 + Silent SNP C C T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a NCOR2_ENST00000405201,NS,carcinoma,0,11 NCOR2_ENST00000405201 NM_006312 exon16 c.G1497A p.Q499Q CTGCTGCTGTTGT 56 10 0.18 58 0 0 0 11 3 0 0.00 . 100128337 bcgsc.ca 37 13 24696846 24696846 + RNA SNP G G A rs17458394 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AATTACGAAGGAG 21 4 0.19 44 0 0 0 0 . 0 bcgsc.ca 37 13 24983385 24983385 + RNA SNP G G T rs79891959 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTAAATGAGTGGA 453 23 0.05 605 0 0 0 0 UFM1 51569 hgsc.bcm.edu 37 13 38934869 38934869 + Missense_Mutation SNP G G T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . NM_016617 exon6 c.G212T p.G71V AACATGGTTCAGA 74 3 0.04 116 0 0 97 0 0.00 . 81993 bcgsc.ca 37 13 47065127 47065127 + RNA SNP G G A rs200135094 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCTGAAGCCCTGC 271 20 0.07 362 5 0.0138121547 4 0 0.00 DACH1 1602 broad.mit.edu 37 13 72440446 72440446 + Silent SNP G G A novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . DACH1 NM_080759 exon1 c.C462T p.S154S ACTACTGCTGCTG 27 3 0.11 21 0 0 123 0 0 . 0 bcgsc.ca 37 14 22053729 22053729 + RNA SNP G G A rs17182620 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTGAGAGGATGTC 34 4 0.12 50 1 0.02 0 0 . 0 bcgsc.ca 37 14 22080350 22080350 + RNA SNP G G T rs79459924 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CATTGCGTATTCT 115 7 0.06 152 0 0 0 0 . 0 bcgsc.ca 37 14 22080368 22080368 + RNA SNP T T C rs7152539 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAGGAATAGTTCA 111 6 0.05 151 0 0 0 0 . 319089 bcgsc.ca;mdanderson.org 37 14 38266074 38266074 + Silent SNP C C T rs9805910 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a TTC6,NS,carcinoma,0,1 . . . . . CTTGGACGGAATC 151 12 0.08 188 0 0 1 0 0 MIA2 0 broad.mit.edu 37 14 39716475 39716475 + Frame_Shift_Del DEL C C - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . MIA2 NM_054024 exon4 c.697delC p.Q233fs GGAGAACAAGCTG 209 7 0.03 214 0 0 82 0 0 . 0 bcgsc.ca 37 14 45329930 45329930 + RNA SNP A A G rs8016855 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTCCACATAAACA 148 7 0.05 201 0 0 0 0 . 0 bcgsc.ca 37 14 45330315 45330315 + RNA SNP A A G rs17633092 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTCGCCATACCAA 449 16 0.04 508 2 0.0039370079 0 0 . 0 bcgsc.ca 37 14 45330721 45330721 + RNA SNP A A T rs7149683 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TCTTCAACTATAT 143 9 0.06 161 0 0 0 0 . 0 bcgsc.ca 37 14 45331290 45331290 + RNA SNP C C T rs73345244 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ACCTCACAGCAAA 194 17 0.09 195 0 0 0 0 . 0 bcgsc.ca 37 14 45331397 45331397 + RNA SNP T T C rs12323568 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTCAGATTGTCCA 301 17 0.06 297 1 0.0033670034 0 0 . 0 bcgsc.ca 37 14 45331633 45331633 + RNA SNP T T G rs12323575 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TAAGATTCTGAAG 309 30 0.10 373 0 0 0 0 . 0 bcgsc.ca 37 14 45332387 45332387 + RNA SNP C C G rs7161626 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GAAGTACACCAAA 284 25 0.09 322 0 0 0 0 . 0 bcgsc.ca 37 14 45332752 45332752 + RNA SNP G G A rs74700367 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCCTTGGGAAATC 132 8 0.06 173 2 0.0115606936 0 0 . 0 bcgsc.ca 37 14 45333584 45333584 + RNA SNP T T C rs17115667 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTTTAATCTCATC 172 8 0.05 233 0 0 1 0 0.00 . 0 bcgsc.ca 37 14 45334503 45334503 + RNA SNP C C A rs8014660 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTACATCAAATAA 160 10 0.06 194 3 0.0154639175 0 0 . 0 bcgsc.ca 37 14 45334686 45334686 + RNA SNP C C T rs17633300 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TCCAACCTCTGAA 292 16 0.05 333 2 0.006006006 0 0 . 0 bcgsc.ca 37 14 65066986 65066986 + RNA SNP T T C rs61987039 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAAATTTTGTGCA 233 10 0.04 263 1 0.0038022814 9 0 0.00 . 317775 bcgsc.ca 37 14 90203530 90203530 + RNA SNP G G C rs72689476 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCTATTGCTTCTA 40 5 0.13 45 0 0 0 0 AKT1 207 bcgsc.ca 37 14 105236681 105236681 + Silent SNP G G T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . AKT1 NM_005163 exon14 c.C1440A p.A480A GCCTCAGGCCGTG 29 4 0.14 28 0 0 379 185 0 0.00 AHNAK2 113146 broad.mit.edu 37 14 105418489 105418490 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . AHNAK2 NM_138420 exon7 c.3299_3300insC p.Q1100fs TCCACCTGGGGGC 175 5 0.03 181 0 0 719 0 0 . 3493 bcgsc.ca 37 14 106174261 106174261 + RNA SNP C C G rs1407 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTCACGCTCAGGT 146 8 0.05 216 0 0 753 1 0.00 . 28474 bcgsc.ca;mdanderson.org 37 14 106452766 106452766 + RNA SNP T T A rs112806369 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGACCCTGCCCTG 518 24 0.05 618 0 0 563 3 0.01 . 28429 bcgsc.ca 37 14 106866588 106866588 + RNA SNP T T C rs73379082 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGCGGATCCAGCT 127 12 0.09 163 1 0.0061349693 0 0 . 28426 bcgsc.ca;mdanderson.org 37 14 106926223 106926223 + RNA SNP T T C rs2467912 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTCAGTTCTCAG 182 12 0.07 205 1 0.0048780488 57 0 0.00 . 28426 bcgsc.ca;mdanderson.org 37 14 106926287 106926287 + RNA SNP G G A rs2467911 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GAATCGGCCCTTC 143 14 0.10 156 0 0 66 0 0.00 . 28461 bcgsc.ca;mdanderson.org 37 14 107170005 107170005 + RNA SNP T T C rs1141720 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGGATTTGTCCGC 105 7 0.07 105 1 0.0095238095 200 1 0.01 . 28454 bcgsc.ca 37 14 107178938 107178938 + RNA SNP T T C rs17113976 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTGCTGTAGTATT 263 7 0.03 344 0 0 19 0 0.00 . 390561 bcgsc.ca 37 15 31129037 31129037 + RNA SNP G G A rs11070624 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGTTCCGGAGGTA 339 19 0.06 352 7 0.0198863636 4 0 0.00 AGBL1 123624 broad.mit.edu 37 15 87066164 87066165 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . AGBL1 NM_152336 exon18 c.2541_2542insC p.S847fs CCGAAGTCCCGTG 243 6 0.02 257 0 0 151 0 0 . 0 bcgsc.ca 37 15 93974276 93974276 + RNA SNP C C G rs28539148 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGCTCCCAGAAAC 137 10 0.07 117 0 0 0 0 . 0 broad.mit.edu 37 15 102312710 102312710 + RNA SNP A A G rs116458034 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTTCACATCTCGG 23 3 0.13 27 0 0 3 0 0.00 C16orf90 0 broad.mit.edu 37 16 3546140 3546141 + RNA INS - - A rs200618809 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . C16orf90 . . . . CCGTCTCAAAAAA 5 2 0.40 5 0 0 16 0 0 CNGB1 1258 ucsc.edu;mdanderson.org 37 16 57937856 57937856 + Silent SNP C C T rs413562 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . CNGB1 NM_001297 exon27 c.C2664A p.A888A CTGTCCGGCGGTG 81 9 0.11 74 0 0 105 0 0 HYDIN 54768 bcgsc.ca 37 16 71101279 71101279 + Silent SNP G G T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . HYDIN NM_001198542 exon15 c.C2070A p.S690S AGTGTTGGAGCAT 50 4 0.08 59 1 0.0169491525 788 3 0 0.00 PKD1L2 114780 broad.mit.edu 37 16 81155069 81155069 + RNA DEL A A - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . PKD1L2 . . . . CATCTCAAAAAAA 6 3 0.50 7 0 0 361 1 0 0.00 VMO1 284013 bcgsc.ca 37 17 4689195 4689195 + Splice_Site DEL C C - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . VMO1 NM_001144939 exon3 c.347+1G>- . GACATACCATCAC 95 10 0.11 96 0 0 19 0 0 . 0 bcgsc.ca 37 17 16796691 16796691 + RNA SNP C C T rs6502530 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTCCACGGCAGG 69 8 0.12 88 0 0 0 0 . 0 broad.mit.edu 37 17 18996545 18996545 + Frame_Shift_Del DEL G G - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGACCTGCTTGTT 927 10 0.01 1048 0 0 0 0 LOC100287072 0 bcgsc.ca 37 17 20619842 20619842 + RNA SNP A A G rs112468000 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAGCAGAATGGAA 245 8 0.03 280 0 0 5 0 0.00 . 284203 bcgsc.ca 37 17 20805348 20805348 + RNA SNP A A G rs57960567 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTGTTGATCACCT 206 10 0.05 190 0 0 5 0 0.00 . 645668 bcgsc.ca 37 17 25409812 25409812 + RNA SNP G G A rs2061899 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGTGAAGCACTGG 123 6 0.05 98 1 0.0102040816 0 0 . 645740 bcgsc.ca 37 17 25982851 25982851 + Splice_Site SNP A A T rs9897292 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTGCTTACTTCCG 78 9 0.12 54 0 0 0 0 KRT32 3882 bcgsc.ca 37 17 39619093 39619094 + Missense_Mutation DNP GT GT AC novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 GT GT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . KRT32 NM_002278 exon6 c.A1205G p.N402S GTCCTCGTTCTCC 115 10 0.09 160 0 0 57 6 0 0.00 . 644157 bcgsc.ca 37 17 43663247 43663247 + RNA SNP C C A rs1724390 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGTCCACGCGGGA 35 12 0.34 32 0 0 0 0 . 0 bcgsc.ca 37 17 44336943 44336943 + RNA SNP C C T rs62623402 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTCAGCCCCAGC 216 18 0.08 221 0 0 58 0 0.00 . 0 bcgsc.ca 37 17 44337209 44337209 + RNA SNP C C T rs112008792 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTAGCCCGAGCCC 205 9 0.04 156 0 0 33 0 0.00 . 0 bcgsc.ca 37 17 44344738 44344749 + RNA DEL GCTGGTGACCCT GCTGGTGACCCT - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 GCTGGTGACCCT GCTGGTGACCCT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CATCTGGCTGGTG 90 3 0.03 92 0 0 5 0 0.00 . 0 bcgsc.ca 37 17 44344822 44344822 + RNA SNP G G A rs76934998 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TCTTCCGAGTCCA 128 13 0.10 151 1 0.0066225166 10 0 0.00 . 0 bcgsc.ca 37 17 44344858 44344858 + RNA SNP A A G rs74358353 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCTGCAATAAACC 111 13 0.12 138 0 0 4 0 0.00 TBC1D3P1-DHX40P1 0 broad.mit.edu 37 17 58054437 58054438 + RNA INS - - A novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTTACAGAAAAAA 12 2 0.17 10 0 0 0 0 . 284167 bcgsc.ca 37 17 60214389 60214389 + RNA SNP G G A rs72844475 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCTTGGGCACCGC 65 5 0.08 51 0 0 70 0 0.00 ZNF44 51710 hgsc.bcm.edu;broad.mit.edu 37 19 12384353 12384353 + Frame_Shift_Del DEL G G - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . ZNF44 NM_001164276 exon5 c.862delT p.Y288fs TAGATAGGAACTG 157 11 0.07 162 0 0 55 36 0 0.00 ZNF799 90576 broad.mit.edu 37 19 12501744 12501745 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . ZNF799 NM_001080821 exon4 c.1468_1469insA p.Y490fs AAAGGTATTGGAA 226 7 0.03 215 0 0 111 16 0 0.00 . 100506916 bcgsc.ca 37 19 16091763 16091763 + RNA SNP T T C rs8103740 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TCTCTCTTTGCTA 48 5 0.10 43 0 0 0 0 GPI 2821 bcgsc.ca 37 19 34856274 34856274 + Missense_Mutation SNP G G T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . GPI NM_001184722 exon2 c.G220T p.D74Y AACAAGGACCGCT 21 4 0.19 32 0 0 63 224 0 0.00 . 0 bcgsc.ca 37 19 36989005 36989005 + RNA SNP C C T rs2945970 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATCCAGCGGCGCC 61 5 0.08 51 0 0 0 0 SUPT5H 6829 hgsc.bcm.edu 37 19 39944127 39944128 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . SUPT5H NM_001130825 exon3 c.207_208insC p.K69fs CAAGAAACCCCGC 145 9 0.06 113 0 0 119 163 0 0.00 . 171427 bcgsc.ca 37 19 41332171 41332171 + RNA SNP C C T rs78011401 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGATGTCGTACAA 231 11 0.05 253 0 0 11 0 0.00 . 1550 ucsc.edu 37 19 41531656 41531656 + Missense_Mutation SNP A A C rs7249735 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGGGATAGATGCT 41 4 0.10 41 0 0 0 0 HIF3A 64344 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 46828803 46828803 + Silent SNP A A G novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a HIF3A_ENST00000377670,NS,carcinoma,0,2 HIF3A_ENST00000377670 NM_152795 exon11 c.A1347G p.P449P TCTCCCAGATGAA 62 13 0.21 70 1 0.0142857143 0 2 4 0 0.00 BIRC8 112401 bcgsc.ca 37 19 53792954 53792955 + Missense_Mutation DNP GC GC AT novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 GC GC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . BIRC8 NM_033341 exon1 c.G673A p.A225M ATAACCGCGCTGC 199 11 0.06 182 0 0 54 0 0 . 653753 bcgsc.ca 37 19 53818603 53818603 + RNA SNP G G A rs10439122 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTTGGGGTTAGAT 153 12 0.08 153 0 0 0 0 RDH13 112724 ucsc.edu;bcgsc.ca 37 19 55568084 55568085 + Missense_Mutation DNP CG CG TT rs36097401 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 CG CG Unknown Untested Somatic WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a RDH13_ENST00000415061,colon,carcinoma,-1,5 RDH13 NM_001145971 exon3 c.C276A p.NA92KT GCCGGGCGTTGAC 171 16 0.09 167 2 0.0119760479 43 5 26 0 0.00 MATN3 4148 broad.mit.edu 37 2 20194085 20194085 + Frame_Shift_Del DEL C C - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . MATN3 NM_002381 exon7 c.1380delG p.S460fs AAGATACGAGCTG 151 1 0.01 173 0 0 28 1 0 0.00 AFTPH 54812 broad.mit.edu 37 2 64800144 64800144 + Frame_Shift_Del DEL T T - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . AFTPH NM_017657 exon6 c.2336delT p.I779fs CTTCCATCGGTCA 278 7 0.03 337 0 0 117 95 0 0.00 . 116143 bcgsc.ca 37 2 68352515 68352515 + RNA SNP A A C rs6742154 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTGAGCACTGGAG 74 7 0.09 79 0 0 0 0 LOC285074 0 bcgsc.ca 37 2 87303060 87303060 + RNA SNP C C G rs79162177 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGATCTCGTGCTT 26 4 0.15 30 0 0 8 0 0.00 . 0 bcgsc.ca 37 2 87355925 87355925 + RNA SNP G G A rs77851313 bycluster;byfrequency TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTTCTCGTTCAGT 289 16 0.06 355 0 0 0 0 . 28935 bcgsc.ca 37 2 89513365 89513365 + RNA SNP A A G rs181706250 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTGAGCAGGGACC 157 9 0.06 200 3 0.015 246 1 0.00 SNRNP200 23020 hgsc.bcm.edu 37 2 96940775 96940775 + Missense_Mutation SNP G G C novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . NM_014014 exon45 c.C6386G p.A2129G GTCTCAGCTTCTT 99 5 0.05 127 0 0 1354 1 0.00 . 643445 bcgsc.ca 37 2 97695036 97695036 + RNA SNP C C A rs116171118 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTTGACCCAGCTT 246 12 0.05 297 2 0.0067340067 0 0 . 0 bcgsc.ca 37 2 107107511 107107511 + RNA SNP C C T rs11124115 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGATTCCGCAAAA 193 16 0.08 221 2 0.0090497738 1 0 0.00 . 0 bcgsc.ca 37 2 107107567 107107567 + RNA SNP G G C rs2228021 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGTTTCGGGATGC 179 14 0.08 191 0 0 5 0 0.00 NEB 4703 broad.mit.edu 37 2 152364618 152364619 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . NEB NM_001271208 exon163 c.23457_23458insA p.K7819fs CTTGTACTTTTTC 163 8 0.05 171 0 0 1697 22 0 0.00 NOSTRIN 115677 broad.mit.edu 37 2 169699562 169699563 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . NOSTRIN NM_001039724 exon8 c.565_566insA p.Q189fs TACTACCAAAAAA 408 0 0.00 495 0 0 68 18 0 0.00 . 0 bcgsc.ca 37 2 184472711 184472711 + RNA SNP T T G rs61733051 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCGATTTCTGTTG 170 8 0.05 194 0 0 16 0 0.00 . 0 bcgsc.ca;mdanderson.org 37 2 202939654 202939654 + Missense_Mutation SNP T T C rs10221698 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTCCTGTCAGCAA 155 10 0.06 220 1 0.0045454545 0 0 CPS1 1373 hgsc.bcm.edu 37 2 211459325 211459325 + Missense_Mutation SNP G G T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . NM_001122633 exon13 c.G1276T p.V426F TCTCGGGTTGAGG 96 5 0.05 110 0 0 1 0 0.00 . 339766 bcgsc.ca;mdanderson.org 37 2 234717839 234717839 + Missense_Mutation SNP C C A rs188948269 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGGCCTCCTACTG 140 13 0.09 196 1 0.0051020408 0 0 . 0 bcgsc.ca;mdanderson.org 37 2 240500173 240500173 + Silent SNP T T C rs10187580 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a AC079612.1,NS,carcinoma,0,1 . . . . . GTCGTCTGCAAGC 75 7 0.09 90 1 0.0111111111 1 0 0 . 0 bcgsc.ca 37 2 241865156 241865156 + Silent SNP T T C rs4675847 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTCTGTCAGGTG 351 15 0.04 353 0 0 0 0 . 0 bcgsc.ca 37 2 241871956 241871956 + RNA SNP G G T rs12472087 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTGCAGTGCACT 73 5 0.07 92 1 0.0108695652 0 0 . 0 bcgsc.ca;mdanderson.org 37 2 241872597 241872597 + Missense_Mutation SNP A A G rs4441463 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTCTCCAGGAGCA 136 10 0.07 177 3 0.0169491525 0 0 . 0 bcgsc.ca;mdanderson.org 37 20 4053254 4053254 + Missense_Mutation SNP A A G rs6139288 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAGGGAAACCAGG 115 14 0.12 111 0 0 0 0 . 0 bcgsc.ca 37 20 6195664 6195664 + RNA SNP C C G rs3905165 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCCCCTCCAACAA 158 10 0.06 183 0 0 5 0 0.00 C20orf112 140688 hgsc.bcm.edu 37 20 31062436 31062436 + Missense_Mutation SNP C C T rs139591950 bycluster TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . NM_001256798 exon5 c.G809A p.R270Q GGGCTCCGCATCC 50 4 0.08 60 0 0 0 6 0 0.00 LOC149950 0 bcgsc.ca 37 20 31189411 31189411 + Missense_Mutation SNP A A G rs2029086 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGCATGAAGCACC 84 7 0.08 93 1 0.0107526882 0 0 . 391269 bcgsc.ca 37 21 15436741 15436741 + RNA SNP C C T rs1810864 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCACTCCGAACTG 131 7 0.05 122 0 0 2 0 0.00 PRODH 5625 bcgsc.ca 37 22 18900987 18900987 + Missense_Mutation SNP G G C novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . PRODH NM_016335 exon14 c.C1579G p.L527V CTAGCAGCTGTCC 233 8 0.03 245 1 0.0040816327 42 3378 0 0.00 . 373856 bcgsc.ca 37 22 20723832 20723832 + Missense_Mutation SNP T T C rs75178771 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTTCATCCGGAT 223 11 0.05 251 5 0.0199203187 0 0 . 645280 bcgsc.ca 37 22 20959252 20959252 + RNA SNP A A G rs526942 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GATGTGACTCTTC 62 5 0.08 34 0 0 0 0 . 0 bcgsc.ca 37 22 51193227 51193227 + RNA SNP T T G rs34608236 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCAGAGTTGAAGC 249 20 0.08 212 2 0.0094339623 120 0 0.00 . 0 bcgsc.ca 37 3 39255871 39255871 + RNA SNP C C G rs7622622 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTGTAACCATAAC 35 4 0.11 52 0 0 1 0 0.00 LOC646498 0 ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49215966 49215966 + Silent SNP C C T rs9837625 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . NM_001080528 exon3 c.G147A p.P49P CTGCGCCGGCTCC 57 6 0.11 68 0 0 0 0 . 100289640 bcgsc.ca 37 3 87100447 87100447 + RNA SNP G G A rs9831869 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AATATCGTGCTTT 358 25 0.07 480 1 0.0020833333 19 0 0.00 . 79289 bcgsc.ca 37 3 98031539 98031539 + RNA SNP A A G rs2316268 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATGTGCACCCTGC 78 4 0.05 84 0 0 0 0 . 0 bcgsc.ca 37 3 98377789 98377789 + RNA SNP C C G rs3796137 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCACAACCTTTAC 72 11 0.15 59 0 0 0 0 . 0 bcgsc.ca 37 3 98377862 98377862 + RNA SNP G G C rs3796138 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCAGAAGAACAAC 78 11 0.14 88 0 0 0 0 . 339881 bcgsc.ca 37 3 122380614 122380614 + RNA SNP C C A rs790118 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTGCAGCGTCAGC 73 9 0.12 80 1 0.0125 0 0 . 0 bcgsc.ca 37 3 132106634 132106634 + RNA SNP G G A rs10935006 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCATACGTTATTG 124 10 0.08 133 0 0 0 0 . 285329 bcgsc.ca 37 3 148703787 148703787 + RNA SNP T T G rs3732559 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTCACTTCTGACG 128 7 0.05 153 0 0 4 0 0.00 . 0 bcgsc.ca 37 3 180042256 180042256 + RNA SNP A A G rs9867767 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAGATTACACAAA 145 12 0.08 150 0 0 0 0 . 0 bcgsc.ca 37 3 180042567 180042567 + RNA SNP A A G rs4854970 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ACAGAGACAGAAC 65 6 0.09 63 0 0 0 0 . 389197 broad.mit.edu;bcgsc.ca 37 4 5990110 5990110 + Translation_Start_Site SNP C C A rs4689287 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTGCCCCTGAGCC 102 8 0.08 131 0 0 1 0 0.00 . 391672 bcgsc.ca 37 4 83323174 83323174 + RNA SNP C C T rs13144673 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AATATTCACAAAC 165 13 0.08 197 2 0.0101522843 1 0 0.00 . 0 bcgsc.ca 37 4 138369443 138369443 + RNA SNP A A T rs9993896 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGGAAGAGTGTCA 36 4 0.11 33 0 0 0 0 . 0 bcgsc.ca 37 4 144832823 144832823 + RNA SNP T T G rs183478773 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGAGTCTCCATTT 490 22 0.04 635 2 0.0031496063 0 0 . 0 bcgsc.ca 37 4 144833153 144833154 + RNA DNP CT CT GG novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 CT CT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTTCCCCTGCACC 129 8 0.06 167 0 0 8 0 0.00 . 0 bcgsc.ca 37 4 166469496 166469496 + RNA SNP G G A rs17587610 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTAGCGGGTTTC 28 4 0.14 43 0 0 0 0 . 10934 bcgsc.ca;mdanderson.org 37 4 174537356 174537356 + RNA SNP T T A rs34402795 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATTTGTTGAGTAG 148 11 0.07 183 0 0 0 0 TTC37 9652 broad.mit.edu 37 5 94850586 94850587 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . TTC37 NM_014639 exon26 c.2676_2677insC p.P892fs ATAAGATGGATCA 360 7 0.02 510 0 0 128 20 0 0.00 MIR583 0 broad.mit.edu 37 5 95414786 95414787 + RNA INS - - TAAAA rs5869706 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATGCACTTAAAGT 141 8 0.06 198 0 0 0 0 WDR36 134430 bcgsc.ca 37 5 110436345 110436346 + Missense_Mutation DNP AT AT CC novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 AT AT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . WDR36 NM_139281 exon5 c.T636C p.H212P TTTTGCATCCAAG 482 19 0.04 630 8 0.0126984127 111 3 0 0.00 CLINT1 9685 hgsc.bcm.edu;bcgsc.ca 37 5 157233045 157233046 + Frame_Shift_Del DEL CA CA - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 CA CA Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . CLINT1 NM_014666 exon7 c.771_772del p.257_258del TGTCGTCACAGTC 210 24 0.11 281 0 0 86 39 0 0.00 CDKAL1 54901 bcgsc.ca 37 6 21065449 21065450 + Missense_Mutation DNP CA CA TG novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 CA CA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a CDKAL1,NS,carcinoma,0,1 CDKAL1 NM_017774 exon12 c.A1227G p.P409L AAGTTCCAGCACA 120 8 0.07 140 0 0 55 1 29 0 0.00 BTN2A3P 0 broad.mit.edu 37 6 26426983 26426984 + RNA INS - - T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCTAGTCTTTTTT 9 3 0.33 5 0 0 0 0 . 442188 bcgsc.ca 37 6 29149561 29149561 + RNA SNP G G A rs3116817 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTGTGGGAAAGAC 100 17 0.17 115 0 0 0 0 . 442188 bcgsc.ca 37 6 29149605 29149605 + RNA SNP G G T rs3116818 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TACTTTGTTCTCA 121 20 0.17 102 1 0.0098039216 0 0 . 442188 bcgsc.ca 37 6 29149632 29149632 + RNA SNP T T G rs3129168 bycluster;byfrequency;by2hit2allele TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GAGTGTTTCCTAC 123 21 0.17 104 0 0 0 0 . 442188 bcgsc.ca 37 6 29149645 29149645 + RNA SNP C C T rs3116819 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGGTGGCGATGTC 120 18 0.15 116 0 0 0 0 . 26695 bcgsc.ca;mdanderson.org 37 6 29230577 29230577 + RNA SNP C C A rs3117328 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATATACCTATATC 87 7 0.08 106 0 0 0 0 PRRT1 80863 broad.mit.edu 37 6 32118387 32118387 + Missense_Mutation SNP G G T novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . PRRT1 NM_030651 exon2 c.C316A p.R106S GCATGCGGGGCAA 14 2 0.14 25 0 0 14 0 0 . 442204 bcgsc.ca 37 6 33306794 33306794 + RNA SNP T T G rs3130267 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAAAGCTCCCTCA 87 6 0.07 71 0 0 0 0 . 0 bcgsc.ca 37 6 99622711 99622711 + RNA SNP C C T rs13203293 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAGGTGCCAAAGT 144 9 0.06 146 0 0 0 0 . 114182 bcgsc.ca 37 6 134924962 134924962 + RNA SNP C C T rs1977140 bycluster;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTGCTCCCCAAAT 51 4 0.08 93 0 0 0 0 . 0 bcgsc.ca 37 7 1733182 1733182 + Missense_Mutation SNP C C T rs79496824 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CATACACGCCTGT 174 10 0.06 178 1 0.0056179775 0 0 . 0 bcgsc.ca 37 7 1733192 1733192 + Missense_Mutation SNP C C T rs56130225 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGTGGACGTAGCC 175 10 0.06 171 1 0.0058479532 0 0 . 0 bcgsc.ca 37 7 10491126 10491126 + RNA SNP C C T rs6970227 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATGAACCCCACCA 126 12 0.10 134 1 0.0074626866 7 0 0.00 . 0 bcgsc.ca 37 7 10492136 10492136 + RNA SNP C C T rs4725276 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTCTTTCCCTTGG 100 7 0.07 111 2 0.018018018 0 0 . 0 bcgsc.ca 37 7 28319234 28319234 + RNA SNP A A C rs177484 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTGGAAACTTTTC 202 10 0.05 198 1 0.0050505051 0 0 . 100128459 bcgsc.ca 37 7 56296969 56296969 + RNA SNP C C T rs816390 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATTGGCCAGCCGT 110 7 0.06 100 0 0 0 0 . 27320 bcgsc.ca 37 7 63040467 63040467 + RNA SNP G G A rs1860493 bycluster;byhapmap TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GACCACGGTGCCT 52 6 0.12 53 0 0 0 0 . 0 bcgsc.ca 37 7 63354705 63354705 + RNA SNP C C A rs73123056 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTTAAGCTAAATC 257 14 0.05 222 0 0 0 0 POMZP3 22932 broad.mit.edu 37 7 76247569 76247570 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . POMZP3 NM_152992 exon4 c.276_277insC p.P92fs GGGTCGAGGAACT 1742 12 0.01 1192 0 0 19 190 0 0.00 . 0 bcgsc.ca 37 7 128220111 128220111 + RNA SNP G G T rs4294131 bycluster;byhapmap TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTGCACGATCCTC 695 29 0.04 822 7 0.0085158151 8 0 0.00 . 155100 bcgsc.ca 37 7 152143744 152143744 + RNA SNP A A G rs6953943 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TACCACAGCATTG 104 8 0.08 113 0 0 0 0 MCM4 4173 hgsc.bcm.edu 37 8 48874151 48874151 + Missense_Mutation SNP A A C novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . NM_182746 exon3 c.A146C p.Q49P AGTTGCAGCCGAT 76 8 0.11 72 0 0 73 11 0.15 . 441391 bcgsc.ca 37 9 30690152 30690152 + RNA SNP C C A rs187211150 by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GCTTACCCCTTCT 418 18 0.04 481 1 0.0020790021 0 0 . 0 bcgsc.ca 37 9 38453992 38453992 + RNA SNP C C T rs78688365 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATTGCTCCAGCTG 19 4 0.21 22 0 0 0 0 . 0 bcgsc.ca 37 9 65632051 65632051 + RNA SNP C C T rs12684652 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CACAGACTTCATC 496 16 0.03 635 5 0.0078740157 0 0 . 0 bcgsc.ca 37 9 88990413 88990413 + RNA SNP C C T rs11141356 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CGGACACGGCCAT 25 4 0.16 19 0 0 0 0 . 100129793 bcgsc.ca 37 9 125449495 125449499 + RNA DEL AAAAC AAAAC - novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 AAAAC AAAAC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAAGGAAAAACAA 80 4 0.05 92 0 0 0 0 . 256158 bcgsc.ca 37 9 133294244 133294244 + Silent SNP G G A rs13294886 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGGAGAGCCCACA 142 7 0.05 195 2 0.0102564103 1 0 0.00 . 0 bcgsc.ca 37 X 35077823 35077823 + RNA SNP T T C rs3109859 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AAGTACTTGGAGT 43 5 0.12 35 0 0 0 0 . 139163 bcgsc.ca 37 X 49431714 49431714 + RNA SNP A A G rs6608906 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GTTGGGAGCAATG 24 5 0.21 22 0 0 0 0 . 139163 bcgsc.ca 37 X 49432879 49432880 + RNA DNP CA CA TG novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 CA CA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGTGATCACTGAG 64 5 0.08 42 0 0 0 0 . 139163 bcgsc.ca 37 X 49432943 49432943 + RNA SNP T T C rs6608907 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGGCTGTGGCTGG 42 4 0.10 36 0 0 0 0 . 0 bcgsc.ca 37 X 53834482 53834482 + RNA SNP A A C rs10449002 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGATTGAAGCTCC 25 5 0.20 25 0 0 1 1 1.00 . 0 bcgsc.ca 37 X 68003320 68003320 + RNA SNP T T C rs12012713 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CATGCCTGGGCAC 67 9 0.13 53 1 0.0188679245 0 0 . 0 bcgsc.ca 37 X 68004148 68004148 + RNA SNP T T C rs7061948 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCACCTTGTGAAC 113 12 0.11 110 0 0 0 0 . 0 bcgsc.ca 37 X 68004230 68004230 + RNA SNP A A C rs7058210 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ACCGACATATTCG 248 25 0.10 274 0 0 1 1 1.00 . 0 bcgsc.ca 37 X 68004333 68004333 + RNA SNP G G T rs111708563 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGATAGGCATAGT 302 39 0.13 306 2 0.0065359477 59 0 0.00 . 3947 bcgsc.ca 37 X 75556211 75556211 + RNA SNP C C A rs11798238 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CCGCAACTGGTAC 38 6 0.16 35 0 0 1 0 0.00 . 254700 bcgsc.ca 37 X 89368606 89368606 + RNA SNP G G T rs5941478 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TATTGCGATAGTT 119 7 0.06 108 0 0 1 0 0.00 . 0 bcgsc.ca 37 X 100212525 100212525 + RNA SNP T T C rs6616208 bycluster;byfrequency;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGTTGGTTGAAAT 54 7 0.13 52 0 0 3 0 0.00 . 0 bcgsc.ca 37 X 101437635 101437635 + RNA SNP A A G rs5945049 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . ATCTCCAGGTAAG 433 39 0.09 502 3 0.0059760956 0 0 . 84443 ucsc.edu;bcgsc.ca;mdanderson.org 37 X 106796084 106796084 + Silent SNP T T C rs12011630 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TGCTCTTGTCCTT 101 14 0.14 90 0 0 0 0 . 84443 ucsc.edu;bcgsc.ca;mdanderson.org 37 X 106841068 106841068 + Silent SNP G G A rs61184704 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGAGGAGGAGGAG 51 8 0.16 64 0 0 0 0 . 392517 bcgsc.ca 37 X 107037795 107037795 + Silent SNP C C A rs5962885 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGATGTCGGTTTT 147 16 0.11 102 1 0.0098039216 0 0 . 643873 bcgsc.ca 37 X 110863204 110863204 + RNA SNP A A G novel TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGAGCTACTTTTC 62 6 0.10 50 0 0 24 0 0.00 . 0 bcgsc.ca 37 X 114659687 114659687 + RNA SNP A A G rs926705 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . AGTGGAATTGTAG 16 4 0.25 33 1 0.0303030303 0 0 . 642812 bcgsc.ca 37 X 115239675 115239675 + RNA SNP G G C rs7057314 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CTCTACGTTCGGC 101 8 0.08 114 1 0.0087719298 0 0 . 0 bcgsc.ca 37 X 118012888 118012888 + RNA SNP G G A rs261662 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TCTTCAGTGACGT 73 6 0.08 49 0 0 0 0 . 0 bcgsc.ca 37 X 134345975 134345975 + RNA SNP G G A rs147984738 bycluster;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTAATTGGATGTG 317 24 0.08 310 1 0.0032258065 0 0 . 0 bcgsc.ca 37 X 134741152 134741152 + RNA SNP C C T rs5929670 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . CAGATGCTGCAGT 164 17 0.10 158 1 0.0063291139 0 0 . 0 bcgsc.ca 37 X 135027101 135027101 + RNA SNP T T C rs6528321 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . GGTGCATTGCTAC 87 7 0.08 99 1 0.0101010101 0 0 . 100289259 bcgsc.ca 37 X 136742802 136742802 + RNA SNP T T C rs4240110 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TTCCTCTATTCTC 48 5 0.10 65 1 0.0153846154 0 0 TMLHE-AS1 0 broad.mit.edu 37 X 154578866 154578866 + RNA DEL T T - rs67633161 TCGA-VF-A8A9-01A-11D-A435-10 TCGA-VF-A8A9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0612a927-064e-4f49-9539-52c45867c5f6 3891e12d-7570-4058-8227-fdc2c5caa80a . . . . . . TCTCTGTTTTTTT 13 6 0.46 8 0 0 0 0