Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ZBTB48 3104 mdanderson.org 37 1 6646792 6646792 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . ZBTB48 NM_005341 exon5 c.G1082T p.R361L TCCGCCGAAGGAT 56 3 0.05 62 0 0 33 82 0 0.00 PADI2 11240 mdanderson.org 37 1 17431436 17431436 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . PADI2 NM_007365 exon2 c.C213A p.L71L GGGCGAGAGAAGC 39 3 0.08 38 0 0 72 40 0 0.00 PADI2 11240 mdanderson.org 37 1 17431515 17431515 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . PADI2 NM_007365 exon2 c.C134A p.S45X TGTTCCGAGTGCT 50 3 0.06 47 0 0 72 40 0 0.00 KIF17 57576 mdanderson.org 37 1 21031250 21031250 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . KIF17 NM_020816 exon5 c.C813A p.G271G GACATTGCCCAGT 50 3 0.06 52 0 0 130 5 0 0.00 RPS6KA1 6195 mdanderson.org 37 1 26898408 26898408 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . RPS6KA1 NM_001006665 exon18 c.G1848T p.M616I CACCATGCTGGCA 34 3 0.09 16 0 0 65 215 0 0.00 MECR 51102 bcgsc.ca 37 1 29542572 29542572 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MECR NM_016011 exon3 c.C351A p.S117R CACATTGCTGCCC 134 7 0.05 124 0 0 31 75 0 0.00 TCHH 7062 hgsc.bcm.edu 37 1 152082320 152082320 + Missense_Mutation SNP T T C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 TCHH,NS,carcinoma,0,5 TCHH NM_007113 exon3 c.A3373G p.R1125G CCTCTCTCAGCAG 120 7 0.06 85 1 0.0117647059 0 5 0 0 GON4L 54856 ucsc.edu 37 1 155726782 155726782 + Silent SNP C C T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . GON4L NM_001037533 exon27 c.G5484A p.R1828R TTTTTTCCTCTTG 194 1 0.01 132 0 0 392 76 12 0.16 SNAP47 116841 mdanderson.org 37 1 227947187 227947187 + Splice_Site SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . SNAP47 NM_053052 exon3 c.1123+1G>T . ATGCAGGTTAGTG 80 4 0.05 77 0 0 42 0 0 JMJD1C 221037 broad.mit.edu 37 10 64958278 64958278 + Missense_Mutation SNP T T C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . JMJD1C NM_032776 exon12 c.A5486G p.K1829R CCATCCTTTTTCA 118 3 0.03 129 0 0 347 31 0 0.00 CNNM1 26507 broad.mit.edu 37 10 101124187 101124187 + Missense_Mutation SNP T T G novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 CNNM1,extremity,malignant_melanoma,0,1 CNNM1 NM_020348 exon5 c.T2042G p.V681G TGGAGGTGGAGGT 45 11 0.24 49 10 0.2040816327 101 1 0 0 MUC2 4583 mdanderson.org 37 11 1093304 1093304 + Missense_Mutation SNP C C T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MUC2 NM_002457 exon30 c.C5123T p.T1708I CGGTGACCCCAAC 33 3 0.09 27 0 0 614 0 0 MOB2 81532 broad.mit.edu 37 11 1501963 1501963 + Missense_Mutation SNP G G C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MOB2 NM_001172223 exon2 c.C263G p.A88G TTGCTGGCCAGCC 65 8 0.12 84 4 0.0476190476 23 65 1 0.02 EIF3F 8665 mdanderson.org 37 11 8013657 8013657 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . EIF3F NM_003754 exon3 c.G462T p.K154N TGCTAAGAATATG 39 3 0.08 41 0 0 23 229 0 0.00 SBF2 81846 mdanderson.org 37 11 9801975 9801975 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . SBF2 NM_030962 exon40 c.C5540A p.S1847Y GCATCAGAGATAC 53 3 0.06 60 0 0 146 40 0 0.00 FOLH1 2346 bcgsc.ca 37 11 49204790 49204790 + Silent SNP A A G rs76509850 bycluster;byfrequency TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . FOLH1 NM_004476 exon7 c.T831C p.Y277Y ATAAGCATATTCT 167 12 0.07 196 0 0 141 3 0 0.00 OR5F1 338674 mdanderson.org 37 11 55761334 55761334 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . OR5F1 NM_003697 exon1 c.C768A p.I256I AGTATAGATGCAG 92 4 0.04 92 0 0 116 0 0 MED19 219541 mdanderson.org 37 11 57479594 57479594 + Missense_Mutation SNP C C T rs202123309 by1000genomes;alternate_allele TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MED19 NM_153450 exon1 c.G58A p.A20T CGAGTGCGGTTGG 62 3 0.05 71 0 0 15 17 0 0.00 DDB1 1642 broad.mit.edu 37 11 61071379 61071379 + Silent SNP C C A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . DDB1 NM_001923 exon22 c.G2790T p.V930V CAGCAGCACTGAG 111 7 0.06 109 2 0.0183486239 100 838 11 0.01 PITPNM1 9600 mdanderson.org 37 11 67265611 67265611 + Missense_Mutation SNP C C A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . PITPNM1 NM_001130848 exon11 c.G1667T p.C556F TGCCCACAGAAGC 24 2 0.08 30 0 0 84 57 0 0.00 FAM181B 220382 mdanderson.org 37 11 82443763 82443763 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . FAM181B NM_175885 exon1 c.C1009A p.L337M CAGTCAGGGGGCT 49 3 0.06 49 0 0 14 0 0 FGF23 8074 mdanderson.org 37 12 4488714 4488714 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . FGF23 NM_020638 exon1 c.C35A p.A12D CACAAGGCACAGA 34 4 0.12 27 0 0 57 0 0 TUBA1C 84790 ucsc.edu 37 12 49666152 49666152 + Silent SNP G G A rs199599214 byfrequency TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 TUBA1C,colon,carcinoma,0,1 TUBA1C NM_032704 exon4 c.G492A p.K164K CAAGAAGTCCAAG 312 27 0.09 227 19 0.0837004405 32 1 1918 1010 0.53 NAV3 89795 bcgsc.ca;mdanderson.org 37 12 78513322 78513322 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . NAV3 NM_014903 exon15 c.G3346T p.G1116C TTGGACGGTTCAC 126 5 0.04 110 0 0 506 0 0 SART3 9733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 108938917 108938917 + Missense_Mutation SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_014706 exon4 c.C727T p.R243W TCACCCGAGCAGC 193 49 0.25 198 0 0 63 18 0.29 OAS1 4938 broad.mit.edu 37 12 113354329 113354329 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . OAS1 NM_001032409 exon4 c.G670T p.G224W AAGCTTGGGAAGC 132 4 0.03 115 0 0 128 188 0 0.00 RASAL1 8437 mdanderson.org 37 12 113565942 113565942 + Missense_Mutation SNP T T C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . RASAL1 NM_001193520 exon4 c.A164G p.E55G TACTCCTCCCCCC 47 3 0.06 44 0 0 89 5 0 0.00 TPCN1 53373 mdanderson.org 37 12 113714756 113714756 + Silent SNP C C T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . TPCN1 NM_001143819 exon12 c.C1191T p.D397D CAATGACATTGAG 48 3 0.06 48 0 0 109 60 4 0.07 EP400 57634 hgsc.bcm.edu 37 12 132547105 132547105 + Silent SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_015409 exon47 c.G8193A p.Q2731Q GCAGCAGCAGCAG 101 9 0.09 96 0 0 33 0 0.00 HSPH1 10808 mdanderson.org 37 13 31727066 31727066 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . HSPH1 NM_006644 exon5 c.C452A p.A151D CTCTCAGCATCTG 50 3 0.06 67 0 0 65 72 0 0.00 MIR1247 100302145 mdanderson.org 37 14 102026686 102026686 + RNA SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . CCCGGGGTAGAGA 31 3 0.10 29 0 0 0 0 SPPL2A 84888 mdanderson.org 37 15 51028300 51028300 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . SPPL2A NM_032802 exon8 c.C930A p.D310E ATACCTGTCTTCA 25 2 0.08 39 0 0 26 186 0 0.00 ACAN 176 bcgsc.ca 37 15 89395085 89395085 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . ACAN NM_001135 exon11 c.G2087T p.G696V CCTCTGGTGTGGA 154 6 0.04 203 1 0.0049261084 220 1 0 0.00 HAPLN3 145864 mdanderson.org 37 15 89422428 89422428 + Missense_Mutation SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . HAPLN3 NM_178232 exon4 c.C566T p.A189V TGCTCTGCACAGA 47 3 0.06 67 0 0 43 83 1 0.01 WFIKKN1 117166 mdanderson.org 37 16 683468 683468 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . WFIKKN1 NM_053284 exon2 c.G1058T p.R353L GTGCCCGCGGCCC 9 2 0.22 8 0 0 30 2 0 0.00 PKD1 5310 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 2156409 2156409 + Missense_Mutation SNP G G C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_000296 exon18 c.C7479G p.F2493L GCATTCGAAGTGC 32 6 0.19 27 0 0 10 4 0.40 C16orf88 400506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 19722702 19722702 + Missense_Mutation SNP T T C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 C16orf88,NS,carcinoma,0,1 C16orf88 NM_001012991 exon3 c.A979G p.I327V GGTCTATGTGCGC 100 14 0.14 123 0 0 0 1 83 18 0.22 ACSM2A 123876 broad.mit.edu 37 16 20492208 20492208 + Missense_Mutation SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . ACSM2A NM_001010845 exon13 c.G1474A p.A492T GAGACGGCTGTGA 186 7 0.04 188 0 0 120 0 0 PHKB 5257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 47630436 47630436 + Missense_Mutation SNP C C G novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_000293 exon13 c.C1357G p.L453V GCAAAACTCCTGG 134 16 0.12 119 0 0 21 1 0.05 SLC12A3 6559 mdanderson.org 37 16 56919268 56919268 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . SLC12A3 NM_001126108 exon15 c.G1917T p.K639N CATCAAGAACTAC 35 3 0.09 54 0 0 99 0 0 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 89345676 89345677 + Missense_Mutation DNP TC TC AA novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 TC TC Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_001256183 exon9 c.G7273T p.D2425F ATGGCATCCAGCT 131 15 0.11 107 0 0 133 7 0.05 CLUH 23277 broad.mit.edu 37 17 2598369 2598369 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 KIAA0664_ENST00000322335,NS,carcinoma,0,2 . NM_015229 exon16 c.C2517A p.A839A GATGGCGGCTGAG 52 3 0.06 59 1 0.0169491525 2 115 0 0.00 SPNS3 201305 broad.mit.edu;mdanderson.org 37 17 4351498 4351498 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . SPNS3 NM_182538 exon6 c.G670T p.V224F CTGCTGGTTCCAG 52 4 0.08 64 0 0 52 0 0 ACAP1 9744 mdanderson.org 37 17 7252473 7252473 + Missense_Mutation SNP A A T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . ACAP1 NM_014716 exon18 c.A1838T p.Q613L TGATCCAGGCCAC 56 3 0.05 54 0 0 66 126 0 0.00 FGF11 2256 mdanderson.org 37 17 7345131 7345131 + Missense_Mutation SNP T T C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . FGF11 NM_004112 exon3 c.T341C p.V114A GTGTGGTCACCAT 61 3 0.05 66 0 0 14 13 0 0.00 MYOCD 93649 mdanderson.org 37 17 12649289 12649289 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 MYOCD_ENST00000425538,NS,carcinoma,0,2 MYOCD NM_153604 exon9 c.G1025T p.S342I CACTGAGCAATAC 128 5 0.04 140 0 0 291 2 1 0 0.00 FLJ36000 0 broad.mit.edu 37 17 21909166 21909167 + RNA DEL TG TG - novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . TTCCTCTGTGTGT 7 3 0.43 5 0 0 1 0 0.00 TMEM97 27346 ucsc.edu 37 17 26653806 26653806 + Missense_Mutation SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . TMEM97 NM_014573 exon3 c.G518A p.R173K AGAAAAGAAAAAA 57 3 0.05 61 1 0.0163934426 27 65 11 0.17 . 0 broad.mit.edu 37 17 29369597 29369598 + RNA INS - - CA rs140197488 by1000genomes TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . TTGCAAGCACACA 7 2 0.29 5 0 0 0 0 KRTAP4-11 653240 hgsc.bcm.edu 37 17 39274360 39274360 + Missense_Mutation SNP A A T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 KRTAP4-11,NS,carcinoma,0,1 KRTAP4-11 NM_033059 exon1 c.T208A p.C70S AGATGCAGCATCT 34 4 0.12 34 2 0.0588235294 0 1 0 0 KRTAP4-12 83755 mdanderson.org 37 17 39280273 39280273 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . KRTAP4-12 NM_031854 exon1 c.C102A p.T34T GCAGCAGGTGGTC 56 6 0.11 45 1 0.0222222222 32 0 0 CLTC 1213 bcgsc.ca 37 17 57746271 57746271 + Silent SNP C C T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . CLTC NM_004859 exon14 c.C2262T p.Y754Y CTGCTACGATCCT 46 4 0.09 31 0 0 124 135 0 0.00 GREB1L 80000 mdanderson.org 37 18 19079853 19079853 + Missense_Mutation SNP A A T rs4800747 bycluster;byhapmap;by1000genomes;alternate_allele TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . GREB1L NM_001142966 exon22 c.A3555T p.E1185D GCAGGAATGTGAC 58 2 0.03 58 0 0 69 1 0 0.00 DSG1 1828 broad.mit.edu 37 18 28934743 28934743 + Missense_Mutation SNP G G T rs201083341 bycluster;by1000genomes TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . DSG1 NM_001942 exon15 c.G2584T p.V862L TCAAACGTGGTAG 121 4 0.03 143 0 0 176 0 0 GALR1 2587 mdanderson.org 37 18 74962795 74962795 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . GALR1 NM_001480 exon1 c.G291T p.A97A GTACGCGCTGCCC 40 3 0.08 46 0 0 53 0 0 CHAF1A 10036 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 4409387 4409387 + Silent SNP C C T rs188842259 bycluster;by1000genomes TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_005483 exon3 c.C591T p.G197G GAGAGGCGACTCC 120 9 0.08 82 0 0 0 60 11 0.18 MUC16 94025 mdanderson.org 37 19 9059459 9059459 + Missense_Mutation SNP G G T rs201658687 TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MUC16 NM_024690 exon3 c.C27987A p.S9329R TGTTCTGCTAGAA 99 5 0.05 79 0 0 4315 0 0 ZNF700 90592 hgsc.bcm.edu 37 19 12060269 12060269 + Missense_Mutation SNP A A G novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_001271848 exon4 c.A1439G p.K480R AATGTAAGGAATG 83 4 0.05 66 0 0 25 0 0.00 ATP13A1 57130 mdanderson.org 37 19 19770791 19770791 + Silent SNP G G A rs111834843 bycluster;byfrequency;by1000genomes TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 ATP13A1,colon,carcinoma,0,1 ATP13A1 NM_020410 exon2 c.C402T p.Y134Y GGGGTCGTACTCC 55 3 0.05 40 0 0 0.002 82 1 80 0 0.00 . 0 broad.mit.edu 37 19 20242380 20242381 + RNA DEL TT TT - rs373507394 alternate_allele TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 TT TT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . TTCTTCTTTTTTT 6 2 0.33 6 0 0 0 0 MEGF8 1954 mdanderson.org 37 19 42861670 42861670 + Missense_Mutation SNP C C A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MEGF8 NM_001271938 exon28 c.C4945A p.L1649M CAGCAGCTGCTGG 47 3 0.06 56 0 0 358 7 0 0.00 ATF5 22809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50434258 50434258 + Missense_Mutation SNP C C T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_012068 exon3 c.C151T p.L51F GGCGGGCTTCCAG 66 14 0.21 86 0 0 220 9 0.04 TRIM28 10155 mdanderson.org 37 19 59059871 59059871 + Missense_Mutation SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 TRIM28,NS,carcinoma,+1,1 TRIM28 NM_005762 exon9 c.G1235A p.R412H CAGAGCGTCCTGG 57 3 0.05 60 0 0 46 1 1373 0 0.00 ANKRD36BP2 0 broad.mit.edu 37 2 89082294 89082295 + RNA INS - - TT rs368332037 bycluster TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . AGTCTCATATGTT 7 3 0.43 7 0 0 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89082296 89082297 + RNA INS - - TC rs370959214 TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . TCTCATATGTTGA 7 3 0.43 7 0 0 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89082340 89082343 + RNA DEL ATTG ATTG - novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 ATTG ATTG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . TCATGTATTGATT 5 2 0.40 13 0 0 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89082352 89082353 + RNA INS - - T rs369392603 TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . TATTTTGTTTCAA 5 2 0.40 16 0 0 0 0 RAB3GAP1 22930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 135920150 135920150 + Missense_Mutation SNP A A T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_001172435 exon20 c.A2315T p.K772I TCCAGAAACCTGC 113 11 0.10 116 0 0 118 3 0.03 SLC38A11 151258 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 165793940 165793940 + Splice_Site SNP C C G novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 SLC38A11,colon,carcinoma,0,1 SLC38A11 NM_173512 exon6 c.304-1G>C . GGAGACCTGTAAA 55 6 0.11 46 0 0 41 1 0 0 SP140L 93349 mdanderson.org 37 2 231193483 231193483 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . SP140L NM_138402 exon2 c.G44T p.G15V TGAACGGAGGTGT 87 4 0.05 106 0 0 68 20 0 0.00 DIDO1 11083 mdanderson.org 37 20 61525294 61525294 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . DIDO1 NM_033081 exon12 c.C2825A p.P942Q TCCAGCGGGGAGG 65 3 0.05 45 0 0 321 12 0 0.00 MICAL3 57553 broad.mit.edu 37 22 18273827 18273832 + In_Frame_Del DEL GCTCCC GCTCCC - novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 GCTCCC GCTCCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MICAL3 NM_015241 exon31 c.5756_5761del p.1919_1921del GCTCCAGCTCCCG 59 9 0.15 46 0 0 53 21 0 0.00 ZNF74 7625 mdanderson.org 37 22 20760070 20760070 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . ZNF74 NM_001256524 exon6 c.G747T p.V249V GTTCGTGTGCGGC 45 3 0.07 37 0 0 54 20 0 0.00 ZNF74 7625 mdanderson.org 37 22 20760418 20760418 + Silent SNP C C T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . ZNF74 NM_001256524 exon6 c.C1095T p.C365C CGAGTGCGGCAAG 66 5 0.08 59 0 0 54 25 0 0.00 AIFM3 150209 mdanderson.org 37 22 21334370 21334370 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . AIFM3 NM_001146288 exon19 c.G1732T p.E578X GTCGCTGAGGTGC 41 3 0.07 31 0 0 49 9 0 0.00 FAM83F 113828 hgsc.bcm.edu 37 22 40391306 40391307 + In_Frame_Ins INS - - CAAGGC novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . FAM83F NM_138435 exon1 c.260_261insCAAGGC p.S87delinsSKA GCAAGAGCAAGGC 20 10 0.50 9 0 0 29 2 0 0.00 PPP6R2 9701 mdanderson.org 37 22 50845165 50845165 + Missense_Mutation SNP T T C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . PPP6R2 NM_001242899 exon4 c.T275C p.I92T CGCAGATCAGCGA 56 3 0.05 44 0 0 71 58 0 0.00 GRIP2 80852 broad.mit.edu 37 3 14575374 14575374 + RNA DEL T T - novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . GRIP2 . . . . CATCTCTTTTCCC 6 2 0.33 7 0 0 68 0 0 NBEAL2 23218 mdanderson.org 37 3 47036675 47036675 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . NBEAL2 NM_015175 exon13 c.G1450T p.A484S TGCCCTGCCAGCC 70 11 0.16 50 4 0.08 267 16 0 0.00 SPINK8 646424 bcgsc.ca;mdanderson.org 37 3 48362556 48362556 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . SPINK8 NM_001080525 exon2 c.C76A p.L26I TAGGAAGGGGGAA 78 5 0.06 75 0 0 5 0 0 CAMKV 79012 broad.mit.edu 37 3 49897047 49897047 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . CAMKV NM_024046 exon11 c.C1210A p.P404T TGGCTGGGGTGAC 133 5 0.04 153 0 0 84 4 0 0.00 FAM194A 131831 mdanderson.org 37 3 150421549 150421549 + Missense_Mutation SNP T T A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 FAM194A,NS,carcinoma,+1,1 FAM194A NM_152394 exon1 c.A137T p.E46V ACCTCTTCCTCCT 54 8 0.15 44 3 0.0681818182 91 1 0 0 SPINK2 6691 mdanderson.org 37 4 57687798 57687798 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . SPINK2 NM_001271722 exon1 c.C31A p.L11M GGAGCAGCAGCGC 48 3 0.06 33 0 0 12 7 0 0.00 TRIO 7204 mdanderson.org 37 5 14369582 14369582 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . TRIO NM_007118 exon18 c.G3166T p.V1056L GACCACGTGACGC 49 3 0.06 49 0 0 305 7 0 0.00 NPR3 4883 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 32712263 32712263 + Silent SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_000908 exon1 c.G381A p.K127K CGCCAAGCCAGAC 109 22 0.20 139 0 0 0 0 MAP1B 4131 mdanderson.org 37 5 71482492 71482492 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MAP1B NM_005909 exon4 c.G421T p.G141W CTGACCGGGCAGT 64 3 0.05 90 0 0 243 1 0 0.00 EIF4E1B 253314 broad.mit.edu 37 5 176070126 176070128 + In_Frame_Del DEL AGA AGA - novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 AGA AGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . EIF4E1B NM_001099408 exon4 c.59_61del p.20_21del AGGAGGAGAAGGA 153 8 0.05 143 0 0 24 0 0 DOPEY1 23033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 83847668 83847668 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_015018 exon21 c.G3907T p.A1303S AAACTTGCCAGAA 53 7 0.13 69 0 0 8 0 0.00 SOGA3 387104 mdanderson.org 37 6 127796588 127796588 + Missense_Mutation SNP G G T rs374876819 TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 C6orf174,bladder,carcinoma,0,2 . NM_001012279 exon6 c.C2583A p.D861E GCTGCCGTCGTCC 53 3 0.06 56 0 0 2 1 0 0.00 SCAF8 22828 hgsc.bcm.edu 37 6 155153803 155153803 + Silent SNP T T C novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . NM_014892 exon20 c.T3090C p.P1030P TAGACCTCCCCCT 104 5 0.05 79 0 0 127 2 0.02 RBAK 57786 mdanderson.org 37 7 5104859 5104859 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . RBAK NM_021163 exon5 c.G1772T p.G591V ACACAGGCGAGAA 44 4 0.09 38 0 0 82 8 0 0.00 STK17A 9263 mdanderson.org 37 7 43622932 43622932 + Silent SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . STK17A NM_004760 exon1 c.G90A p.P30P CGGGCCGTGCCGG 26 2 0.08 31 0 0 31 2 0 0.00 MAGI2 9863 mdanderson.org 37 7 77762375 77762375 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . MAGI2 NM_012301 exon18 c.C3034A p.L1012I TGTTGAGCTCTGC 38 3 0.08 35 0 0 246 0 0 MGC72080 0 hgsc.bcm.edu 37 7 97599706 97599706 + RNA SNP T T G novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . . . . . TTTTTTTTGGAGA 174 16 0.09 176 0 0 1 0 0.00 NKX2-6 137814 mdanderson.org 37 8 23560024 23560024 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . NKX2-6 NM_001136271 exon2 c.C846A p.G282G ATTCTGGCCACCG 17 2 0.12 21 0 0 6 0 0 FAM49B 51571 mdanderson.org 37 8 130863111 130863111 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . FAM49B NM_001256763 exon10 c.C683A p.A228D ACACTAGCCATTG 46 3 0.07 48 0 0 36 323 0 0.00 FAM166B 730112 mdanderson.org 37 9 35562684 35562684 + Missense_Mutation SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . FAM166B NM_001164310 exon4 c.C506A p.S169Y TCCATGGAGTAGG 51 3 0.06 66 0 0 19 0 0 ND6 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 14179 14179 + Silent SNP A A G rs28357671 bycluster;byfrequency;alternate_allele TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . ENST00000361681 exon1 c.T495C p.Y165Y TACAATATATACA 13 6 0.46 21 0 0 0 0 CYTB 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 14804 14804 + Missense_Mutation SNP G G A novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . . ENST00000361789 exon1 c.G58A p.D20N TTCATCGACCTCC 77 17 0.22 84 0 0 0 0 HAUS7 55559 mdanderson.org 37 X 152734605 152734605 + Silent SNP G G T novel TCGA-VF-A8AB-01A-31D-A435-10 TCGA-VF-A8AB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01d47985-e09b-4438-8c1b-820be9a3e0e3 16586582-b7cd-44b0-8494-76745a479e35 . HAUS7 NM_017518 exon2 c.C253A p.R85R ATTACCGGGTACA 57 3 0.05 48 0 0 44 106 0 0.00