Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV NOL9 79707 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 6586826 6586826 + Missense_Mutation SNP T T A novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_024654 exon11 c.A1889T p.E630V AGCTCTTCCGGGG 130 28 0.22 124 0 0 70 13 0.19 PIK3CD 5293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 9775907 9775907 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_005026 exon5 c.G371A p.G124D CCGCAGGCCTCCA 82 12 0.15 77 0 0 86 9 0.10 . 729779 bcgsc.ca 37 1 79521355 79521355 + RNA SNP C C T rs3795404 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TAACTCCCAAGTT 89 7 0.08 83 0 0 1 0 0.00 . 440595 bcgsc.ca 37 1 96913449 96913449 + RNA SNP C C T rs11165631 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GTTCATCGTGGCA 116 6 0.05 118 0 0 85 0 0.00 . 0 bcgsc.ca 37 1 106435772 106435772 + RNA SNP T T G rs12066937 bycluster;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TGAGAGTTCATTT 173 12 0.07 174 0 0 25 0 0.00 NRAS 4893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 115256529 115256529 + Missense_Mutation SNP T T C rs11554290 bycluster;byfrequency;byhapmap TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 NRAS,NS,haematopoietic_neoplasm,-1,2068 NRAS NM_002524 exon3 c.A182G p.Q61R TCTTCTTGTCCAG 136 18 0.13 151 0 0 -1 2068 53 14 0.26 . 0 bcgsc.ca 37 1 146523045 146523045 + RNA SNP A A G rs580852 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TCACTAAGTAGAC 81 6 0.07 86 0 0 0 0 . 0 bcgsc.ca 37 1 146791020 146791020 + RNA SNP A A G rs4950399 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GGCCAGATTTGTG 129 5 0.04 184 0 0 0 0 . 0 bcgsc.ca 37 1 157679783 157679783 + RNA SNP A A G rs17727309 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GTGCCCAACCTGG 197 9 0.05 228 0 0 12 1 0.08 OBSCN 84033 bcgsc.ca 37 1 228412227 228412228 + Missense_Mutation DNP TG TG CA novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . OBSCN NM_001271223 exon10 c.G2998A p.A908T AGCCAGTGCCACA 98 8 0.08 104 0 0 2142 10 0 0.00 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228480321 228480321 + Silent SNP G G T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_001271223 exon45 c.G11988T p.V3996V CCCTGTGGAGTGG 168 24 0.14 185 0 0 3 1 0.33 . 388761 bcgsc.ca;mdanderson.org 37 1 247886949 247886949 + Missense_Mutation SNP T T C rs36075193 bycluster;byfrequency;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TCATGATTACCTC 123 8 0.07 142 0 0 0 0 . 0 bcgsc.ca 37 10 37626786 37626786 + RNA SNP G G A rs144068387 by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GCAATCGAAGTTC 189 8 0.04 219 0 0 0 0 . 0 bcgsc.ca 37 10 52026055 52026055 + RNA SNP C C T rs138093924 bycluster;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GCAAAGCTGGAAT 169 6 0.04 197 0 0 82 0 0.00 . 0 bcgsc.ca 37 11 4233016 4233016 + RNA SNP A A C rs75810507 bycluster;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . AAGAAGAGTCTCT 86 7 0.08 96 0 0 1 0 0.00 . 401663 bcgsc.ca;mdanderson.org 37 11 4880892 4880892 + Silent SNP T T C rs11034368 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TCAAATTTGCTTG 46 4 0.09 59 0 0 0 0 C11orf48 79081 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 62434994 62434994 + Splice_Site DEL C C - novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . C11orf48 NM_024099 exon5 c.538+2G>- . TACTTACCCTCAA 134 16 0.12 142 0 0 18 1 0 0.00 . 0 bcgsc.ca 37 11 67524358 67524358 + RNA SNP A A G rs140614895 bycluster;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . AATGCCAAGGGCA 32 6 0.19 26 0 0 0 0 . 0 bcgsc.ca 37 12 43030796 43030796 + RNA SNP G G A rs79463838 bycluster;byfrequency;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CTTTCTGGATGTG 115 6 0.05 130 0 0 0 0 OR8S1 341568 bcgsc.ca 37 12 48919659 48919660 + Missense_Mutation DNP TG TG CA novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . OR8S1 NM_001005203 exon1 c.G246A p.L82P AGATGCTGGAGAA 111 10 0.09 136 1 0.0073529412 47 0 0 LOC100507377 0 bcgsc.ca 37 12 74565295 74565295 + RNA SNP C C T rs6582210 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . AATCCTCAAGGCC 28 5 0.18 23 0 0 2 0 0.00 HECTD4 283450 hgsc.bcm.edu 37 12 112628625 112628625 + Missense_Mutation SNP G G T rs151280588 by1000genomes;alternate_allele TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_001109662 exon60 c.C9035A p.P3012Q GATGTCGGAATGG 115 5 0.04 123 0 0 39 0 0.00 LRRC43 254050 ucsc.edu 37 12 122685163 122685164 + Missense_Mutation DNP AA AA GG novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 AA AA Unknown Untested Somatic WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . LRRC43 NM_001098519 exon9 c.A1577G p.K526G AAAGGGAAGGAGA 64 22 0.34 52 0 0 105 2 0 0.00 PGAM5 192111 hgsc.bcm.edu;mdanderson.org 37 12 133291445 133291445 + Nonsense_Mutation SNP C C T rs374915398 TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_138575 exon2 c.C193T p.R65X ATCAGGCGAGAAC 107 10 0.09 93 0 0 37 4 0.11 . 0 bcgsc.ca 37 14 45330721 45330721 + RNA SNP A A T rs7149683 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TCTTCAACTATAT 129 7 0.05 141 0 0 0 0 . 0 bcgsc.ca 37 14 45331290 45331290 + RNA SNP C C T rs73345244 bycluster;byfrequency;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . ACCTCACAGCAAA 143 6 0.04 166 0 0 0 0 . 0 bcgsc.ca 37 14 45331397 45331397 + RNA SNP T T C rs12323568 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TTCAGATTGTCCA 282 9 0.03 285 0 0 0 0 . 0 bcgsc.ca 37 14 45331633 45331633 + RNA SNP T T G rs12323575 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TAAGATTCTGAAG 293 10 0.03 332 1 0.0030120482 1 1 1.00 rescued with RNA-seq . 0 bcgsc.ca 37 14 45332387 45332387 + RNA SNP C C G rs7161626 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GAAGTACACCAAA 242 15 0.06 278 0 0 0 0 . 28452 bcgsc.ca 37 14 106518415 106518415 + RNA SNP C C A rs188349361 bycluster;byfrequency TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GTAATACACAGCC 224 25 0.11 242 5 0.020661157 2416 381 0.16 LOC727924 0 bcgsc.ca 37 15 22298279 22298279 + RNA SNP G G A rs11856712 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GTCGCCGGTCACA 146 10 0.07 191 0 0 0 0 . 0 bcgsc.ca 37 15 30297737 30297737 + RNA SNP C C T rs2015398 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CTTATCCGGTGTT 144 7 0.05 121 0 0 0 0 . 0 bcgsc.ca 37 15 78272318 78272318 + RNA SNP C C G rs12439777 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CCAGGGCCCTCCC 489 31 0.06 551 0 0 0 0 . 0 bcgsc.ca 37 15 85806001 85806001 + RNA SNP C C T rs2002507 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TGTCCCCGCCAGG 37 4 0.11 41 0 0 1 0 0.00 PKMYT1 9088 bcgsc.ca 37 16 3025413 3025413 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . PKMYT1 NM_182687 exon4 c.C779A p.T260K CCTGCTGTACCCA 117 6 0.05 111 0 0 23 135 0 0.00 FUK 197258 mdanderson.org 37 16 70508475 70508475 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_145059 exon17 c.G2033T p.G678V GGGCTGGTCAGAT 23 3 0.13 28 0 0 14 0 0.00 HYDIN 54768 broad.mit.edu 37 16 70868034 70868034 + Missense_Mutation SNP G G T rs202145562 bycluster TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . HYDIN NM_001270974 exon79 c.C13435A p.L4479M GCTTCAGTGTGAT 49 6 0.12 60 1 0.0166666667 788 0 0 LOC100130015 0 broad.mit.edu;mdanderson.org 37 16 90110027 90110027 + Missense_Mutation SNP G G A rs3743824 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GTCGGCGGCACCT 26 4 0.15 35 0 0 8 0 0.00 SENP3 26168 bcgsc.ca 37 17 7466636 7466636 + Silent SNP G G A novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . SENP3 NM_015670 exon2 c.G243A p.E81E AGAAGAGGAGGAG 90 5 0.06 102 2 0.0196078431 18 131 1 0.01 FLCN 201163 bcgsc.ca 37 17 17118366 17118366 + Missense_Mutation SNP T T C novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . FLCN NM_144997 exon13 c.A1471G p.T491A GGTTGGTCAGAGC 64 5 0.08 88 0 0 87 80 0 0.00 . 0 broad.mit.edu 37 17 20418724 20418728 + RNA DEL TCAGC TCAGC - novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 TCAGC TCAGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CCAGGGTCAGCTC 352 10 0.03 413 0 0 1 0 0.00 . 0 bcgsc.ca 37 17 60324448 60324448 + RNA SNP C C T rs12325728 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GCCTTACTTCCTC 212 12 0.06 246 0 0 0 0 NPC1 4864 ucsc.edu;bcgsc.ca 37 18 21114422 21114422 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . NPC1 NM_000271 exon23 c.C3579A p.H1193Q GCCCATGTGGGCA 53 5 0.09 57 0 0 114 94 0 0.00 GPR108 56927 hgsc.bcm.edu 37 19 6737580 6737580 + Missense_Mutation SNP A A C novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_001080452 exon1 c.T8G p.V3G TCGCTCACTGCCA 17 5 0.29 6 0 0 6 1 0.17 . 100506916 bcgsc.ca 37 19 16091763 16091763 + RNA SNP T T C rs8103740 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TCTCTCTTTGCTA 27 4 0.15 36 0 0 0 0 FKBP8 23770 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 18650505 18650505 + Silent SNP C C A rs370114965 alternate_allele TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 FKBP8,NS,carcinoma,0,1 FKBP8 NM_012181 exon3 c.G318T p.T106T GACCAGCGTCTTC 35 5 0.14 31 0 0 0 1 401 87 0.22 CRIM1 51232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 36623892 36623892 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_016441 exon2 c.G467A p.S156N TTCCAAGTCAGGA 142 22 0.15 163 0 0 19 4 0.21 . 0 broad.mit.edu 37 2 78019879 78019880 + RNA INS - - T rs369659281 bycluster TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . AAATTCCTTTTTT 7 3 0.43 4 0 0 1 0 0.00 ANKRD36BP2 0 broad.mit.edu 37 2 89104503 89104504 + RNA INS - - C rs149625899 bycluster;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . ATTTTTTTCAGAT 23 14 0.61 17 5 0.2941176471 2 0 0.00 GPR45 11250 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 105859305 105859305 + Missense_Mutation SNP A A T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_007227 exon1 c.A990T p.K330N CAAAAAATTCCGC 131 11 0.08 120 0 0 6 1 0.17 . 0 bcgsc.ca;mdanderson.org 37 2 171649402 171649402 + Silent SNP C C T rs3764916 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . AGAGTACCAGCTG 262 11 0.04 258 1 0.003875969 14 0 0.00 CDH22 64405 broad.mit.edu;mdanderson.org 37 20 44839036 44839036 + Missense_Mutation SNP C C T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . CDH22 NM_021248 exon7 c.G1196A p.G399D AGGAGGCCGGAGG 36 5 0.14 39 0 0 112 1 0 0.00 THOC5 8563 broad.mit.edu 37 22 29932681 29932681 + Frame_Shift_Del DEL G G - novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 THOC5,NS,carcinoma,0,2 THOC5 NM_001002878 exon8 c.646delC p.L216fs CCTTGAGAATCTT 105 9 0.09 124 0 0 58 2 92 12 0.13 . 0 bcgsc.ca 37 3 11926467 11926467 + RNA SNP A A G rs2055282 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GACTTTATGTGGA 40 4 0.10 61 0 0 0 0 . 0 bcgsc.ca 37 3 12926399 12926399 + RNA SNP C C T rs61739284 bycluster;byfrequency;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CCCTGACCTCGGA 20 4 0.20 20 0 0 0 0 . 79299 bcgsc.ca 37 3 97940932 97940932 + RNA SNP A A G rs35658290 bycluster;byfrequency;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TCTCACAGGATTT 47 10 0.21 40 0 0 0 0 . 79299 bcgsc.ca 37 3 97941104 97941104 + RNA SNP A A G rs13063850 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GTGGATACTTGGT 92 7 0.08 110 0 0 0 0 . 79291 bcgsc.ca 37 3 97957490 97957490 + RNA SNP G G A rs6439724 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TGCATGGTACAAT 117 9 0.08 123 0 0 0 0 KIAA2018 205717 hgsc.bcm.edu 37 3 113376107 113376107 + Silent SNP C C T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 KIAA2018,colon,carcinoma,0,1 KIAA2018 NM_001009899 exon7 c.G4422A p.Q1474Q TTGTTGCTGTTGC 59 6 0.10 53 0 0 0 1 1 0 0.00 . 285329 bcgsc.ca 37 3 148703787 148703787 + RNA SNP T T G rs3732559 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CTCACTTCTGACG 107 9 0.08 118 1 0.0084745763 4 0 0.00 . 200958 bcgsc.ca 37 3 195345872 195345872 + Missense_Mutation SNP A A C rs199805117 TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CTCTGAAGAGGCA 593 16 0.03 772 0 0 1 0 0.00 ZNF721 170960 ucsc.edu 37 4 437132 437132 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . ZNF721 NM_133474 exon3 c.T1124A p.F375Y TTCAGGGCTGTGT 86 4 0.05 93 0 0 205 28 8 0.29 . 644548 bcgsc.ca 37 4 63682706 63682706 + RNA SNP A A T rs11946403 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CTCCAGATAATGG 125 7 0.06 156 0 0 0 0 . 644548 bcgsc.ca 37 4 63683038 63683038 + RNA SNP C C T rs6852768 bycluster;byfrequency;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GTTGCACCTAATT 183 7 0.04 214 0 0 3 0 0.00 . 0 bcgsc.ca 37 4 189659777 189659777 + RNA SNP G G A rs6553227 bycluster;byfrequency;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . ATGAAGGTTTAAG 170 7 0.04 167 0 0 5 5 1.00 . 0 bcgsc.ca 37 4 189660025 189660025 + RNA SNP G G C rs72553033 bycluster TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . AGTGAAGTAGGTG 90 5 0.06 120 0 0 0 0 DHX29 54505 hgsc.bcm.edu;bcgsc.ca 37 5 54581236 54581236 + Missense_Mutation SNP A A G novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_019030 exon10 c.T1241C p.V414A TTGATTACCCTAA 124 7 0.06 151 0 0 20 5 0.25 ANKHD1 54882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 139907915 139907915 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_017747 exon29 c.G5384A p.G1795E CATCTGGAGTAGG 91 13 0.14 128 0 0 67 24 0.36 PCDHA3 56145 ucsc.edu 37 5 140182571 140182571 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . PCDHA3 NM_031497 exon1 c.G1789T p.V597L CGCGCAGTGGATG 43 4 0.09 54 0 0 396 0 0 ERVFRD-1 405754 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 6 11105023 11105023 + Missense_Mutation SNP T T A novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . NM_207582 exon2 c.A521T p.K174I GGAGGTTTGGGGA 116 9 0.08 133 0 0 1 0 0.00 HLA-C 3107 ucsc.edu 37 6 31238898 31238898 + Missense_Mutation SNP A A C rs201707949 byfrequency TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 HLA-C_ENST00000383329,NS,carcinoma,0,4 HLA-C NM_002117 exon3 c.T571G p.W191G GGAGCCACTCCAC 50 1 0.02 57 2 0.0350877193 92 4 2926 507 0.17 HLA-DRB6 0 broad.mit.edu 37 6 32523273 32523274 + RNA DEL GA GA - novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 GA GA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CACTGTGAGAGGG 10 4 0.40 12 0 0 16 0 0.00 SEPT7P2 0 broad.mit.edu 37 7 45787002 45787002 + RNA DEL A A - novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . TTAGCCAAAAAAA 6 3 0.50 13 0 0 0 0 . 653175 bcgsc.ca 37 7 53255471 53255471 + RNA SNP A A G rs6943510 bycluster;byfrequency;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . AAGCAGATACGAA 247 13 0.05 198 0 0 0 0 . 653175 bcgsc.ca 37 7 53256265 53256265 + RNA SNP G G A rs11972016 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CTTGTCGCAGTCA 262 8 0.03 244 1 0.0040983607 12 0 0.00 . 135942 bcgsc.ca 37 7 143815744 143815744 + RNA SNP T T C rs10263904 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . AAGAACTCCACCA 74 6 0.08 75 1 0.0133333333 0 0 . 135942 bcgsc.ca 37 7 143815780 143815780 + RNA SNP G G T rs10274340 bycluster;byfrequency;by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GAGAAGGCCTTTC 68 5 0.07 60 0 0 0 0 LINC00583 0 broad.mit.edu 37 9 13928081 13928084 + RNA DEL ATTC ATTC - rs35583621 alternate_allele TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 ATTC ATTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . LINC00583 . . . . AAACATATTCAAT 541 12 0.02 566 0 0 1 0 0 LOC642236 0 bcgsc.ca 37 9 68433564 68433564 + RNA SNP C C A novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . CATTTTCCCCTAA 167 9 0.05 167 3 0.0179640719 11 0 0.00 NUP188 23511 ucsc.edu 37 9 131735464 131735464 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . NUP188 NM_015354 exon12 c.G1139T p.C380F GCATGTGTGTCTA 37 4 0.11 46 0 0 140 68 0 0.00 ND5 4540 broad.mit.edu;bcgsc.ca 37 MT 13812 13812 + Silent SNP T T C novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . ENST00000361567 exon1 c.T1476C p.A492A CCTCGCTGTCACT 12 7 0.58 22 0 0 0 0 KDM6A 7403 broad.mit.edu 37 X 44918601 44918602 + Frame_Shift_Del DEL TA TA - novel TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 TA TA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . KDM6A NM_021140 exon12 c.1084_1085del p.362_362del ACTCTCTATGAAT 208 7 0.03 205 0 0 274 30 0 0.00 FAM104B 90736 ucsc.edu 37 X 55172630 55172630 + Nonsense_Mutation SNP G G A rs113263757 bycluster TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . FAM104B NM_001166699 exon3 c.C238T p.Q80X AGAACTGGGGAAA 37 7 0.19 38 2 0.0526315789 28 66 0 0.00 FAM104B 90736 ucsc.edu;mdanderson.org 37 X 55172645 55172645 + Missense_Mutation SNP C C G rs1047042 bycluster;byfrequency;alternate_allele TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . FAM104B NM_001166699 exon3 c.G223C p.D75H TTGCATCGGGTTC 39 8 0.21 38 1 0.0263157895 28 77 0 0.00 MAGEA10-MAGEA5 0 broad.mit.edu 37 X 151290002 151290003 + RNA INS - - T rs200557971 by1000genomes TCGA-WZ-A7V4-01A-11D-A435-10 TCGA-WZ-A7V4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a7bea22d-c914-41c9-bb43-0b1785b36b5b 5d280fa0-3f46-444a-8d3f-bc1be8090d47 . . . . . . GATATTGTTTTTT 12 4 0.33 8 0 0 2 0 0.00