Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV TAS1R3 83756 mdanderson.org 37 1 1269365 1269365 + Missense_Mutation SNP G G A rs201157733 by1000genomes TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_152228 exon6 c.G2080A p.A694T GAGGTCGCACTGT 17 2 0.12 18 0 0 0.001 3 0 0.00 EIF2B3 8891 broad.mit.edu;mdanderson.org 37 1 45341312 45341312 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . EIF2B3 NM_020365 exon9 c.C1031A p.A344D ATCTGGGCTGACG 91 5 0.05 89 0 0 43 262 1 0.00 PKP1 5317 bcgsc.ca 37 1 201291157 201291157 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . PKP1 NM_000299 exon9 c.G1462T p.A488S CTGGACGCCGAGG 56 4 0.07 88 1 0.0113636364 127 0 0 . 343170 broad.mit.edu 37 1 247902370 247902370 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . AGAGGGGCCTTGG 129 5 0.04 150 0 0 0 0 SKIDA1 387640 broad.mit.edu 37 10 21805483 21805483 + Silent SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_207371 exon4 c.G1269A p.E423E CTCTTCCTCCTCC 49 4 0.08 56 0 0 0 0 RET 5979 mdanderson.org 37 10 43596103 43596103 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_020975 exon2 c.G270T p.E90D CCAGGAGGACACC 45 3 0.07 51 0 0 23 0 0.00 BMS1P4 0 broad.mit.edu 37 10 75476823 75476824 + RNA INS - - A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . GGGTAAGAAAAAA 5 1 0.20 6 0 0 7 0 0.00 SORCS1 114815 mdanderson.org 37 10 108469042 108469042 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001206572 exon7 c.C1082A p.P361H GGAAAAGGCTGAT 53 3 0.06 66 0 0 0 0 MUC6 4588 bcgsc.ca 37 11 1017280 1017280 + Missense_Mutation SNP G G T rs199539548 bycluster TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . MUC6 NM_005961 exon31 c.C5521A p.P1841T AAGATGGAACGTG 200 17 0.09 236 4 0.0169491525 408 0 0 MUC2 4583 hgsc.bcm.edu 37 11 1092602 1092619 + In_Frame_Del DEL CCACCACTCCCAGCCCTC CCACCACTCCCAGCCCTC - rs201595190 TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 CCACCACTCCCAGCCCTC CCACCACTCCCAGCCCTC Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . MUC2 NM_002457 exon30 c.4420_4437del p.1474_1479del CTCCAACCACCAC 98 0 0.00 126 0 0 614 0 0 LSP1 4046 mdanderson.org 37 11 1901421 1901421 + Missense_Mutation SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001242932 exon3 c.G542A p.G181D GAGGCGGCCATGT 43 3 0.07 52 0 0 594 0 0.00 TAF6L 10629 mdanderson.org 37 11 62545499 62545499 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_006473 exon4 c.G284T p.R95M CCGCCAGGGAGGG 43 3 0.07 74 0 0 15 0 0.00 SNX32 254122 mdanderson.org 37 11 65620365 65620365 + Missense_Mutation SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_152760 exon12 c.G1094A p.R365H AGTCCCGCCGGGT 52 3 0.06 92 0 0 0 0 BRMS1 25855 mdanderson.org 37 11 66108711 66108711 + Silent SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_015399 exon4 c.G324A p.L108L CCGCTGCAGCCCC 33 3 0.09 56 0 0 100 0 0.00 PPP6R3 55291 mdanderson.org 37 11 68331885 68331885 + Silent SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001164161 exon9 c.G960T p.L320L ACTCCTGCTGGAG 40 3 0.08 68 0 0 42 0 0.00 C11orf54 28970 bcgsc.ca 37 11 93492996 93492996 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . C11orf54 NM_014039 exon7 c.G596T p.C199F TGGTTTGTCTACC 45 4 0.09 65 0 0 23 17 0 0.00 THY1 7070 mdanderson.org 37 11 119291054 119291054 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 THY1,NS,carcinoma,+1,1 THY1 NM_006288 exon3 c.C80A p.A27D AGGCAGGCCGTTA 43 3 0.07 56 0 0 1 1 249 0 0.00 WNK1 65125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 994308 994308 + Silent SNP A A G novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001184985 exon19 c.A5118G p.A1706A TACAGCACTGTAT 188 46 0.24 130 0 0 99 31 0.31 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 25378562 25378562 + Missense_Mutation SNP C C T rs121913527 TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 KRAS_ENST00000256078,colon,carcinoma,+1,137 KRAS_ENST00000256078 NM_004985 exon4 c.G436A p.A146T TCTTTGCTGATGT 144 8 0.06 58 0 0 1 137 245 28 0.11 SSPN 8082 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 26383896 26383896 + Missense_Mutation SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_005086 exon3 c.C619T p.L207F TGCGGCCTTGTGT 131 9 0.07 62 0 0 7 0 0.00 ANKRD33 341405 mdanderson.org 37 12 52282494 52282494 + Silent SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_182608 exon2 c.G288T p.L96L CAGGCTGGGGGCC 51 3 0.06 53 0 0 0 0 APAF1 317 broad.mit.edu 37 12 99056499 99056499 + Silent SNP A A G novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . APAF1 NM_181868 exon7 c.A870G p.K290K GGAAAAAGGACTT 190 4 0.02 202 1 0.004950495 111 6 0 0.00 MYL2 4633 mdanderson.org 37 12 111348947 111348947 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 MYL2,NS,carcinoma,0,1 MYL2 NM_000432 exon7 c.C435A p.D145E AGTCACGTCAGGG 48 3 0.06 65 0 0 0 1 0 0 TUBA3C 7278 mdanderson.org 37 13 19751274 19751274 + Silent SNP G G A rs143115179 byfrequency TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_006001 exon4 c.C849T p.H283H CTGCTCGTGGTAG 107 9 0.08 113 1 0.0088495575 0.008 19 0 0.00 TUBA3C 7278 mdanderson.org 37 13 19751292 19751292 + Silent SNP T T C rs147482964 byfrequency TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_006001 exon4 c.A831G p.S277S CTCGGCTGAGATG 115 11 0.10 109 1 0.0091743119 0.006 18 0 0.00 TPTE2 93492 bcgsc.ca 37 13 20056686 20056686 + Missense_Mutation SNP T T C rs201542496 TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . TPTE2 NM_199254 exon5 c.A121G p.M41V CTAACATACTTTA 387 15 0.04 507 1 0.0019723866 225 1 0 0.00 FANCM 57697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 45618040 45618040 + Missense_Mutation SNP G G T rs141336758 bycluster;alternate_allele TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 FANCM,NS,carcinoma,-1,1 FANCM NM_020937 exon4 c.G760T p.A254S ATATAGGCTGTGC 71 10 0.14 74 0 0 -1 1 1 1 1.00 ZBTB1 22890 mdanderson.org 37 14 64998614 64998614 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_014950 exon3 c.G1934T p.X645L AGAAGTGAGAGAT 110 5 0.05 92 0 0 3 0 0.00 TLN2 83660 mdanderson.org 37 15 62994394 62994394 + Nonsense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_015059 exon15 c.G1900T p.G634X ACTTCTGGAGAGG 43 3 0.07 50 0 0 17 0 0.00 TMEM8A 58986 mdanderson.org 37 16 422283 422283 + Missense_Mutation SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_021259 exon13 c.G2020A p.A674T GGTAAGCCTGGAG 20 2 0.10 25 0 0 98 0 0.00 PIGQ 9091 mdanderson.org 37 16 626176 626176 + Silent SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_148920 exon4 c.G864T p.L288L GGCCCTGGGCCTC 36 3 0.08 30 0 0 41 0 0.00 FAM86A 196483 ucsc.edu 37 16 5140488 5140488 + Missense_Mutation SNP C C T rs200021489 byfrequency TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . FAM86A NM_201400 exon5 c.G421A p.A141T GGGCGGCGTCCCA 127 2 0.02 169 3 0.0177514793 32 69 17 0.25 rescued with RNA-seq KIAA0430 9665 mdanderson.org 37 16 15692880 15692880 + Silent SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001184998 exon26 c.G4815A p.G1605G ACTGGGCCCTGGG 35 3 0.09 23 0 0 46 0 0.00 BCL7C 9274 mdanderson.org 37 16 30904221 30904221 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_004765 exon3 c.C220A p.R74S CCCGACGTTCCCG 27 3 0.11 42 0 0 171 0 0.00 NRN1L 123904 ucsc.edu;bcgsc.ca 37 16 67918828 67918828 + Missense_Mutation SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . NRN1L NM_198443 exon1 c.C22T p.R8C CGCCGCCGCTGCT 22 4 0.18 22 0 0 13 29 0 0.00 TMED6 146456 mdanderson.org 37 16 69377514 69377514 + Silent SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_144676 exon4 c.C519A p.I173I GTGAAAGATATTG 85 5 0.06 86 0 0 6 0 0.00 CDYL2 124359 mdanderson.org 37 16 80638332 80638332 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_152342 exon7 c.C1474A p.L492I AGTCAAGGCCTTT 41 3 0.07 42 0 0 12 0 0.00 BANP 54971 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 88068971 88068971 + Missense_Mutation SNP G G C novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001173542 exon10 c.G1243C p.E415Q CAGGGGGAGCAAG 118 11 0.09 125 0 0 43 5 0.12 GUCY2D 3000 mdanderson.org 37 17 7915838 7915838 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_000180 exon10 c.G2027T p.G676V TGGATGGCAGATT 30 3 0.10 52 0 0 1 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 176 10 0.06 182 8 0.043956044 22 10 0.45 SUPT6H 6830 broad.mit.edu 37 17 27010745 27010745 + Nonsense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . SUPT6H NM_003170 exon17 c.G2140T p.E714X GCCATCGAACGGG 153 5 0.03 182 1 0.0054945055 165 70 0 0.00 SUPT6H 6830 broad.mit.edu;ucsc.edu;mdanderson.org 37 17 27015153 27015153 + Silent SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . SUPT6H NM_003170 exon24 c.G3051T p.L1017L CCAGCTGGTCACC 58 4 0.07 85 0 0 165 61 10 0.16 MRPL45P2 0 broad.mit.edu 37 17 45567245 45567246 + RNA INS - - A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . CCATCTCAAAAAA 12 5 0.42 8 0 0 0 0 PITPNC1 26207 mdanderson.org 37 17 65574359 65574359 + Nonsense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_012417 exon5 c.G352T p.G118X AACAAAGGAAGCA 32 3 0.09 43 0 0 226 0 0.00 TBCD 6904 bcgsc.ca;mdanderson.org 37 17 80869665 80869665 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . TBCD NM_005993 exon23 c.G2038T p.V680L CAAGCAGGTAAGT 75 5 0.07 71 0 0 94 138 0 0.00 HCN2 610 mdanderson.org 37 19 590563 590563 + Silent SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001194 exon1 c.G618A p.P206P CCACCCGTACAGC 32 3 0.09 39 0 0 62 0 0.00 LONP1 9361 broad.mit.edu;mdanderson.org 37 19 5693409 5693409 + Missense_Mutation SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . LONP1 NM_004793 exon17 c.C2603T p.T868I CCCATGGCCAGGG 41 3 0.07 44 1 0.0227272727 66 427 0 0.00 PNPLA6 10908 mdanderson.org 37 19 7619921 7619921 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001166111 exon24 c.G2807T p.C936F TGCGCTGTCCGCG 15 3 0.20 10 0 0 65 0 0.00 COL5A3 50509 mdanderson.org 37 19 10077257 10077257 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_015719 exon63 c.C4624A p.L1542I ACACGAGGCCCGG 13 2 0.15 24 0 0 16 0 0.00 COL5A3 50509 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 10096522 10096522 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . COL5A3 NM_015719 exon31 c.C2402A p.P801H ACCTTAGGTCCAG 66 5 0.08 73 0 0 243 1 0 0.00 CHERP 10523 ucsc.edu 37 19 16641681 16641681 + Nonsense_Mutation SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . CHERP NM_006387 exon6 c.C685T p.Q229X GGGCCTGCTTGCG 38 4 0.11 23 0 0 70 170 0 0.00 KIAA1683 80726 mdanderson.org 37 19 18368036 18368036 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001145304 exon4 c.C4058A p.A1353E GGGTCTGCTGGTC 48 3 0.06 58 0 0 3 0 0.00 TMEM161A 54929 mdanderson.org 37 19 19232386 19232386 + Missense_Mutation SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_017814 exon8 c.G748A p.A250T TCTGGGCCAGCCG 41 3 0.07 52 0 0 51 0 0.00 WDR62 284403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36582162 36582162 + Missense_Mutation SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_173636 exon17 c.G2095A p.V699M ATCTCAGTGATTG 93 10 0.11 97 0 0 145 40 0.28 DMWD 1762 mdanderson.org 37 19 46287528 46287528 + Silent SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_004943 exon5 c.C1998T p.G666G GGAGTTGCCTGGT 24 3 0.13 30 0 0 48 0 0.00 SIGLEC9 27180 mdanderson.org 37 19 51630549 51630549 + Silent SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_014441 exon4 c.G1011A p.L337L CTCCCTGCAGAGT 47 3 0.06 38 0 0 31 0 0.00 PPP2R1A 5518 mdanderson.org 37 19 52723049 52723049 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 PPP2R1A,NS,carcinoma,-1,1 PPP2R1A NM_014225 exon10 c.G1234T p.A412S GAGCTGGCTGAGG 42 4 0.10 38 0 0 -1 1 805 0 0.00 ZNF525 170958 broad.mit.edu 37 19 53879043 53879043 + Silent SNP T T C rs62115350 TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . ZNF525 . . . . CAGGGATGTGGCC 47 3 0.06 41 2 0.0487804878 35 8 0 0.00 NLRP8 126205 mdanderson.org 37 19 56487528 56487528 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_176811 exon8 c.G2735T p.C912F TTAATTGCTGTCA 82 5 0.06 73 0 0 0 0 RNASEH1 246243 broad.mit.edu 37 2 3599780 3599780 + Missense_Mutation SNP G G T rs201104222 by1000genomes;alternate_allele TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . RNASEH1 NM_002936 exon3 c.C363A p.S121R CTCCACGCTCGGC 95 3 0.03 79 0 0 27 158 0 0.00 EPAS1 2034 broad.mit.edu;mdanderson.org 37 2 46605204 46605204 + Missense_Mutation SNP G G C novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . EPAS1 NM_001430 exon10 c.G1421C p.S474T CCACCAGCAGCAG 75 4 0.05 63 0 0 83 30 0 0.00 STAT1 6772 mdanderson.org 37 2 191864377 191864377 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_139266 exon7 c.C516A p.F172L GCATTTGAAGTCA 84 4 0.05 98 0 0 648 0 0.00 ENTPD6 955 mdanderson.org 37 20 25187787 25187787 + Missense_Mutation SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001247 exon3 c.G130A p.A44T AAGGTGGCATACC 42 3 0.07 79 1 0.0126582278 54 0 0.00 ANKRD20A11P 0 broad.mit.edu 37 21 15343746 15343749 + RNA DEL TCTG TCTG - novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 TCTG TCTG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . GTGCTTTCTGATG 13 5 0.38 5 0 0 0 0 GGT3P 0 broad.mit.edu 37 22 18770143 18770144 + RNA INS - - T rs112524868 TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . TTAATTGTTTTTT 10 2 0.20 5 0 0 1 0 0.00 GAS2L1 10634 mdanderson.org 37 22 29704567 29704567 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_152237 exon2 c.G472T p.V158L CGCCTCGTGCAGT 24 3 0.13 22 0 0 101 0 0.00 CHL1 10752 mdanderson.org 37 3 407688 407688 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001253388 exon13 c.G1641T p.M547I GCATATGCTTGAA 44 3 0.07 67 0 0 0 0 IL17RC 84818 mdanderson.org 37 3 9974650 9974650 + Silent SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_153461 exon19 c.C1749T p.G583G CAGGGGCCGCGCG 32 3 0.09 28 0 0 25 0 0.00 FEZF2 55079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 62355878 62355878 + Silent SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_018008 exon5 c.C1260T p.A420A GCAAGTGGCGCAC 155 17 0.11 188 0 0 0 0 NEK11 79858 mdanderson.org 37 3 130947422 130947422 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_024800 exon15 c.G1450T p.D484Y GCATTTGATTCCT 51 3 0.06 56 0 0 7 0 0.00 HPS3 84343 broad.mit.edu 37 3 148858028 148858028 + Missense_Mutation SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . HPS3 NM_032383 exon2 c.G455A p.C152Y TTGGCTGCACAAA 159 5 0.03 174 0 0 104 8 0 0.00 PKD2 5311 mdanderson.org 37 4 88964595 88964595 + Silent SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_000297 exon5 c.G1305T p.L435L TAACCTGTTCTGT 42 3 0.07 65 0 0 14 0 0.00 UBE2D3 7323 broad.mit.edu 37 4 103730964 103730964 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 UBE2D3_ENST00000343106,right_upper_lobe,carcinoma,0,2 UBE2D3 NM_181893 exon2 c.C79A p.P27T CAACTGGACCTGC 256 4 0.02 301 0 0 25 2 475 0 0.00 MGC45800 0 mdanderson.org 37 4 183064680 183064680 + RNA SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . ACTCAGCTGACCT 116 5 0.04 161 0 0 1 0 0.00 PLEKHG4B 153478 bcgsc.ca;mdanderson.org 37 5 174144 174144 + Missense_Mutation SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . PLEKHG4B NM_052909 exon16 c.G3265A p.A1089T AGCTCGGCAGAGG 96 5 0.05 101 0 0 167 1 0 0.00 PCDHB10 56126 mdanderson.org 37 5 140573922 140573922 + Silent SNP C C T rs376773467 bycluster TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_018930 exon1 c.C1797T p.N599N CCAGAACGCCTGG 15 2 0.13 20 0 0 1 0 0.00 SIMC1 375484 broad.mit.edu 37 5 175717431 175717431 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . CAAGATGTGGCAT 155 4 0.03 158 0 0 4 0 0.00 FAM8A1 51439 hgsc.bcm.edu 37 6 17602826 17602826 + Nonsense_Mutation SNP G G T rs74444948 bycluster;byfrequency TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 FAM8A1,NS,carcinoma,-1,2 FAM8A1 NM_016255 exon2 c.G718T p.E240X GGCAGAGAATATG 56 3 0.05 41 2 0.0487804878 0.008 -1 2 16 0 0.00 EHMT2 10919 mdanderson.org 37 6 31860678 31860678 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_025256 exon5 c.C592A p.P198T TCTCAGGGACCGG 45 3 0.07 76 0 0 29 0 0.00 MEP1A 4224 mdanderson.org 37 6 46766384 46766384 + Splice_Site SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_005588 exon4 c.186+1G>T . TTGCAGGTGAGTA 24 3 0.13 25 0 0 0 0 WIPI2 26100 broad.mit.edu 37 7 5266833 5266833 + Missense_Mutation SNP T T C novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . WIPI2 NM_015610 exon10 c.T871C p.W291R ACCACCTGGACCG 79 3 0.04 78 0 0 41 241 0 0.00 BZW2 28969 ucsc.edu;bcgsc.ca;mdanderson.org 37 7 16725542 16725542 + Missense_Mutation SNP C C T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . BZW2 NM_014038 exon6 c.C418T p.L140F CTCTTCCTTAAAG 55 21 0.38 49 3 0.0612244898 35 79 17 0.22 ZAN 7455 broad.mit.edu 37 7 100349595 100349595 + RNA SNP T T A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 ZAN_ENST00000542585,NS,carcinoma,-1,2 ZAN . . . . ATTCCCTCAGAAA 160 6 0.04 129 0 0 658 2 8 0 0.00 . 0 broad.mit.edu 37 7 128210686 128210687 + RNA DEL AT AT - novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 AT AT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . ATGACCATCCTCC 5 2 0.40 8 0 0 3 0 0.00 EZH2 2146 mdanderson.org 37 7 148529746 148529746 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001203247 exon4 c.C343A p.P115T GTAGGGGAGACCA 45 3 0.07 28 0 0 54 0 0.00 CHPF2 54480 broad.mit.edu 37 7 150935559 150935559 + Missense_Mutation SNP T T G novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . CHPF2 NM_019015 exon4 c.T2111G p.V704G TGGAGGTGATGGA 99 18 0.18 104 9 0.0865384615 52 47 2 0.04 BHLHE22 27319 mdanderson.org 37 8 65494205 65494205 + Silent SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_152414 exon1 c.G858T p.L286L CACGCTGCTGCTC 35 3 0.09 35 0 0 12 0 0.00 FABP12 0 broad.mit.edu 37 8 82437068 82437069 + RNA INS - - TAT rs10627097 bycluster;by1000genomes TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . FABP12 . . . . CTGAAAATATCCC 7 5 0.71 6 0 0 20 0 0 PLEC 5339 mdanderson.org 37 8 144993686 144993686 + Missense_Mutation SNP C C T rs375044211 TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 PLEC_ENST00000436759,right_upper_lobe,carcinoma,0,3 PLEC_ENST00000436759 NM_201380 exon32 c.G10714A p.G3572S TGTAGCCGGTGAC 27 3 0.11 15 0 0 0 3 197 0 0.00 MPDZ 8777 mdanderson.org 37 9 13115250 13115250 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001261406 exon39 c.C5364A p.S1788R CACCTGGCTGCTT 28 3 0.11 43 0 0 28 0 0.00 GNAQ 2776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 80430592 80430592 + Missense_Mutation SNP G G C novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_002072 exon3 c.C416G p.P139R ATTCCAGGATCAT 83 34 0.41 109 0 0 45 31 0.69 ROR2 4920 mdanderson.org 37 9 94486405 94486405 + Missense_Mutation SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_004560 exon9 c.C2371A p.Q791K CCTTCTGCTTGGG 34 3 0.09 34 0 0 29 0 0.00 RNR1 6052 hgsc.bcm.edu 37 MT 810 810 + RNA SNP G G A novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . CCCACGGGAAACA 210 23 0.11 548 0 0 0 0 WNK3 65267 mdanderson.org 37 X 54320996 54320996 + Silent SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . NM_001002838 exon8 c.C1683A p.S561S AACAGAGGAGCAG 40 3 0.08 36 0 0 7 0 0.00 . 0 bcgsc.ca 37 X 89295592 89295592 + RNA SNP G G T novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . . . . . . ATGTCTGCTCACC 38 4 0.11 36 0 0 2 0 0.00 PAK3 5063 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 110385387 110385387 + Missense_Mutation SNP T T G novel TCGA-XE-A8H4-01A-31D-A435-10 TCGA-XE-A8H4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2cc915-3956-4c23-9ebc-a6e10b61529e 6423e32a-2e67-4707-a9ad-80324f8a4cc1 . PAK3 NM_001128166 exon4 c.T239G p.I80S ATACGATTCATGT 72 5 0.07 79 0 0 179 1 0 0.00