Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV TAS1R1 80835 mdanderson.org 37 1 6615594 6615594 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_177540 exon1 c.G161T p.R54M AGGTGAGGCACAG 32 3 0.09 41 0 0 1 0 0.00 FBXO2 26232 mdanderson.org 37 1 11710791 11710791 + Silent SNP C C G rs61749273 bycluster TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_012168 exon2 c.G123C p.A41A GGCGGCCGCCGCC 9 2 0.22 17 0 0 17 5 0.29 TMEM51-AS1 200197 hgsc.bcm.edu 37 1 15439098 15439098 + RNA SNP C C T rs114844404 bycluster TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . . . . . TTTTCTCCTCCCG 107 19 0.18 85 0 0 10 0 0.00 MYOM3 127294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 24406587 24406587 + Silent SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_152372 exon20 c.C2505T p.G835G GTGATAGCCTGTG 105 26 0.25 150 0 0 0 0 SLC9A1 6548 broad.mit.edu 37 1 27436115 27436115 + Missense_Mutation SNP T T G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . SLC9A1 NM_003047 exon3 c.A967C p.T323P GGGAGGTAAATCG 103 23 0.22 79 13 0.164556962 68 82 5 0.06 COL24A1 255631 mdanderson.org 37 1 86246917 86246917 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_152890 exon52 c.C4324A p.P1442T CTGTTGGGCCTAT 40 3 0.08 24 0 0 2 0 0.00 RORC 6097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 151783858 151783858 + Silent SNP C C A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d RORC,NS,neuroblastoma,-2,1 RORC NM_005060 exon10 c.G1338T p.L446L CAGCTCCAGATTG 108 20 0.19 112 0 0 -2 1 1 0 0.00 RFWD2 64326 broad.mit.edu 37 1 176105674 176105674 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . RFWD2 NM_022457 exon7 c.C841A p.Q281K GGATCTGTTCCAG 215 15 0.07 150 1 0.0066666667 67 112 0 0.00 DIP2C 22982 mdanderson.org 37 10 395386 395386 + Missense_Mutation SNP T T C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_014974 exon25 c.A2994G p.I998M GTTCGCTATCGCA 49 4 0.08 42 0 0 24 0 0.00 ATOH7 220202 mdanderson.org 37 10 69991089 69991089 + Missense_Mutation SNP A A G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d ATOH7,NS,carcinoma,+2,1 ATOH7 NM_145178 exon1 c.T346C p.F116L GGCCGAAGTGCTC 48 3 0.06 28 0 0 2 1 3 0 0.00 NEUROG3 50674 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 71332771 71332771 + Missense_Mutation SNP G G C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_020999 exon2 c.C29G p.T10S TGGACAGTGGGCG 31 7 0.23 46 0 0 0 0 C10orf76 79591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 103766354 103766354 + Missense_Mutation SNP T T C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_024541 exon14 c.A991G p.S331G CAGGACTGACAGG 70 15 0.21 66 0 0 82 33 0.40 FANK1 92565 mdanderson.org 37 10 127585221 127585221 + Nonsense_Mutation SNP C C T rs202109621 TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_145235 exon1 c.C10T p.Q4X GAGCCCCAGAGTA 17 2 0.12 17 0 0 31 0 0.00 ANO9 338440 mdanderson.org 37 11 431763 431763 + Missense_Mutation SNP T T C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d ANO9,bladder,carcinoma,0,1 ANO9 NM_001012302 exon7 c.A470G p.E157G CGTCCCTCCCCCT 42 3 0.07 67 0 0 0 1 3 0 0.00 PIDD 55367 ucsc.edu;bcgsc.ca 37 11 802246 802246 + Silent SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . PIDD NM_145887 exon6 c.C1125A p.A375A GAGCAGGGCGTCA 43 4 0.09 62 0 0 76 34 0 0.00 MUC6 4588 bcgsc.ca 37 11 1017092 1017092 + Missense_Mutation SNP G G C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . MUC6 NM_005961 exon31 c.C5709G p.S1903R GGATTGGCTGGTC 133 12 0.09 246 8 0.0325203252 408 1 0 0.00 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 1271284 1271284 + Missense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_002458 exon31 c.C13174T p.L4392F TGGATCCTCACAG 109 33 0.30 196 0 0 0 0 ZNF195 7748 mdanderson.org 37 11 3383000 3383000 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001242841 exon5 c.C358A p.L120I CATTGAGGCCTGG 34 3 0.09 63 0 0 23 0 0.00 RRP8 23378 mdanderson.org 37 11 6623111 6623111 + Missense_Mutation SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_015324 exon2 c.C434T p.A145V TGCTGGGCTGAAT 52 3 0.06 112 0 0 86 0 0.00 DCHS1 8642 mdanderson.org 37 11 6644407 6644407 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_003737 exon21 c.C8500A p.H2834N GCACGTGACCCAA 52 4 0.08 43 0 0 96 0 0.00 RCN1 5954 mdanderson.org 37 11 32119923 32119923 + Nonsense_Mutation SNP C C A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_002901 exon3 c.C476A p.S159X ATTCTTCAGATCA 45 3 0.07 91 0 0 116 0 0.00 SLC15A3 51296 mdanderson.org 37 11 60718930 60718930 + Missense_Mutation SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_016582 exon1 c.C94T p.R32W CCGCCCGCCGCCA 25 3 0.12 20 0 0 2 0 0.00 SIPA1 6494 mdanderson.org 37 11 65408903 65408903 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_006747 exon2 c.G511T p.G171C CTCGGGGGTGAGG 21 2 0.10 44 0 0 29 0 0.00 CPT1A 1374 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 68527806 68527806 + Missense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001876 exon17 c.G2029A p.V677I ATAAAACCTATTG 95 9 0.09 182 0 0 90 3 0.03 IL18BP 10068 mdanderson.org 37 11 71711470 71711470 + Silent SNP G G A rs202132601 bycluster;by1000genomes TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001039660 exon3 c.G102A p.S34S TGTCTCGCAGACC 37 3 0.08 64 0 0 0.001 156 0 0.00 INTS4 92105 broad.mit.edu 37 11 77635932 77635932 + Missense_Mutation SNP A A C rs148749715 TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . INTS4 NM_033547 exon12 c.T1378G p.S460A CTCTGGATGAATC 202 3 0.01 285 2 0.0070175439 89 66 0 0.00 TTC12 54970 mdanderson.org 37 11 113233143 113233143 + Silent SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_017868 exon19 c.C1635T p.S545S TCTGAGCCGGACC 41 3 0.07 49 0 0 28 0 0.00 C2CD2L 9854 broad.mit.edu 37 11 118984835 118984835 + Missense_Mutation SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . C2CD2L NM_014807 exon13 c.G1672A p.A558T TATGCGGCATCCC 45 3 0.07 60 0 0 39 18 0 0.00 PRDM10 56980 mdanderson.org 37 11 129785738 129785738 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_020228 exon17 c.C2355A p.S785R GCGCTTGCTGGCA 39 3 0.08 71 0 0 17 0 0.00 WNK1 65125 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 968427 968427 + Missense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001184985 exon6 c.C1417T p.L473F AAAGACCTTTTGA 556 44 0.08 217 0 0 282 18 0.06 RHNO1 83695 broad.mit.edu 37 12 2997087 2997087 + Missense_Mutation SNP A A T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001257098 exon3 c.A179T p.D60V CACCTGATTTTGA 254 27 0.11 99 8 0.0808080808 487 1 0.00 WBP11 51729 broad.mit.edu 37 12 14941901 14941901 + Silent SNP A A G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . WBP11 NM_016312 exon11 c.T1476C p.P492P AGGGGGAGGTAGC 279 6 0.02 113 2 0.017699115 66 1037 9 0.01 WBP11 51729 broad.mit.edu 37 12 14941934 14941934 + Silent SNP A A G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . WBP11 NM_016312 exon11 c.T1443C p.G481G AGGGGGACCAGGA 246 4 0.02 93 0 0 66 1043 10 0.01 . 0 broad.mit.edu 37 12 20096041 20096042 + RNA INS - - A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . . . . . AGCTGTTAAAAAA 87 8 0.09 32 0 0 0 0 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 25398285 25398285 + Missense_Mutation SNP C C G rs121913530 bycluster TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136 KRAS_ENST00000256078 NM_004985 exon2 c.G34C p.G12R CGCCACCAGCTCC 660 34 0.05 179 0 0 1 25136 214 26 0.12 . 283463 bcgsc.ca;mdanderson.org 37 12 40805858 40805858 + Missense_Mutation SNP T T C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . . . . . AGTTCATCCTCTG 41 6 0.15 52 0 0 0 0 ATF7 11016 mdanderson.org 37 12 53927032 53927032 + Missense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_006856 exon7 c.G572A p.G191D AGGGAGCCAGTGG 105 5 0.05 83 0 0 30 0 0.00 MTIF3 219402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 28014201 28014201 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001166263 exon4 c.C385A p.Q129K TGAGCTGATACTC 110 46 0.42 120 0 0 131 53 0.40 FRY 10129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 32721459 32721459 + Missense_Mutation SNP T T G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_023037 exon12 c.T1220G p.L407R AATCTCTCTACAG 84 30 0.36 115 0 0 1 0 0.00 PPP1R13B 23368 mdanderson.org 37 14 104206527 104206527 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_015316 exon12 c.C2226A p.F742L CTGGTAGAAAGGG 41 3 0.07 40 0 0 29 0 0.00 AHNAK2 113146 mdanderson.org 37 14 105406054 105406054 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_138420 exon7 c.C15734A p.A5245D GACATAGCTGCCT 39 3 0.08 85 0 0 2 0 0.00 HERC1 8925 ucsc.edu 37 15 64039940 64039940 + Silent SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . HERC1 NM_003922 exon11 c.C2337A p.L779L GAAAGGGAGTGGG 44 4 0.09 53 0 0 624 10 0 0.00 PLEKHO2 80301 mdanderson.org 37 15 65153711 65153711 + Silent SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_025201 exon5 c.G420T p.V140V GCATGTGACACGG 45 3 0.07 52 0 0 60 0 0.00 CELF6 60677 mdanderson.org 37 15 72608195 72608195 + Silent SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001172684 exon2 c.C336T p.T112T TGGCAGGGTCTTC 30 3 0.10 42 0 0 16 0 0.00 HAPLN3 145864 mdanderson.org 37 15 89421275 89421275 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_178232 exon5 c.C1009A p.P337T CCCCAGGCTCTGG 43 3 0.07 48 0 0 33 0 0.00 ROGDI 79641 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 4848606 4848606 + Silent SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . ROGDI NM_024589 exon7 c.C495T p.T165T GGTGAGGGTGGCG 20 7 0.35 23 0 0 11 119 31 0.26 DNAH3 55567 broad.mit.edu 37 16 20976354 20976354 + Missense_Mutation SNP T T C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d DNAH3_ENST00000261383,bladder,carcinoma,0,4 DNAH3 NM_017539 exon53 c.A8852G p.K2951R AAGTCCTTTTTCT 82 3 0.04 136 0 0 1142 4 5 0 0.00 USP10 9100 hgsc.bcm.edu 37 16 84797756 84797756 + Silent SNP T T C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001272075 exon11 c.T1731C p.G577G ACAAGGTGAAGGA 100 5 0.05 125 0 0 277 0 0.00 MAPT 4137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 44060770 44060770 + Silent SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001123066 exon6 c.G600A p.G200G GGAGGGGCCGCCG 65 21 0.32 72 0 0 0 0 PTBP1 5725 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 806515 806515 + Missense_Mutation SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_002819 exon10 c.G1078A p.A360T GCGGGGGCAGGAA 180 29 0.16 168 0 0 776 189 0.24 FBN3 84467 broad.mit.edu 37 19 8159377 8159377 + Missense_Mutation SNP C C T rs137977437 TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . FBN3 NM_032447 exon46 c.G5858A p.R1953H ATGCAGCGGAAGG 67 16 0.24 74 2 0.027027027 300 120 30 0.25 ANKLE1 126549 broad.mit.edu 37 19 17397490 17397501 + In_Frame_Del DEL TGTGTGTGTGTT TGTGTGTGTGTT - rs35771129 alternate_allele TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 TGTGTGTGTGTT TGTGTGTGTGTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . ANKLE1 . . . . TGTGTGTGTGTGT 20 8 0.40 17 0 0 27 6 0 0.00 GATAD2A 54815 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 19611944 19611944 + Missense_Mutation SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . GATAD2A NM_017660 exon9 c.G1219A p.A407T TCGGCCGCCACTG 95 18 0.19 101 1 0.0099009901 81 570 144 0.25 ZNF432 9668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52550107 52550107 + Silent SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_014650 exon2 c.G15A p.Q5Q AGTCACCTGGGCA 150 28 0.19 106 0 0 49 4 0.08 ALK 238 mdanderson.org 37 2 29462644 29462644 + Silent SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d ALK,right_lower_lobe,carcinoma,+1,1 ALK NM_004304 exon13 c.C2257A p.R753R GGGACCGCATCAT 54 3 0.06 54 0 0 1 1 1 0 0.00 TEKT4 150483 ucsc.edu 37 2 95542476 95542476 + Missense_Mutation SNP C C T rs1052809 bycluster;byfrequency TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d TEKT4,NS,carcinoma,0,1 TEKT4 NM_144705 exon6 c.C1270T p.R424C CGTACTCGCTACC 27 5 0.19 16 0 0 72 1 2 2 1.00 FAHD2CP 0 broad.mit.edu 37 2 96679935 96679937 + RNA DEL AAC AAC - novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 AAC AAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . . . . . GTGATTAACAATT 8 3 0.38 4 0 0 1 0 0.00 FAM178B 51252 mdanderson.org 37 2 97543710 97543710 + Missense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001122646 exon16 c.G1924A p.A642T GCATGGCCTGGGG 45 3 0.07 44 0 0 18 0 0.00 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 141459406 141459406 + Missense_Mutation SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d LRP1B,colon,carcinoma,+1,2 LRP1B NM_018557 exon40 c.C6311T p.A2104V CCGTTTGCATGTG 199 46 0.23 204 0 0 1 2 1 0 0.00 TTN 7273 bcgsc.ca;mdanderson.org 37 2 179605648 179605648 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d TTN_ENST00000359218,NS,carcinoma,-1,3 TTN NM_001267550 exon48 c.C12312A p.S4104R CTGACTGCTCAAT 70 5 0.07 91 0 0 18412 3 0 0 UNC80 285175 mdanderson.org 37 2 210707111 210707111 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_032504 exon21 c.G3401T p.G1134V AAGGTGGGCCAGG 50 3 0.06 44 0 0 0 0 XRCC5 7520 broad.mit.edu 37 2 217012963 217012963 + Missense_Mutation SNP A A G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . XRCC5 NM_021141 exon14 c.A1634G p.K545R AGAAAAAGGATCA 287 4 0.01 270 0 0 64 3275 1 0.00 PER2 8864 mdanderson.org 37 2 239171600 239171600 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_022817 exon10 c.C1146A p.H382Q CTTTTTGTGGATG 50 3 0.06 58 0 0 10 0 0.00 SRMS 6725 mdanderson.org 37 20 62172595 62172595 + Missense_Mutation SNP A A G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_080823 exon7 c.T1234C p.F412L CGCCGAAGGACCA 48 3 0.06 51 0 0 1 0 0.00 LDOC1L 84247 broad.mit.edu;ucsc.edu;mdanderson.org 37 22 44893010 44893010 + Nonsense_Mutation SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . LDOC1L NM_032287 exon2 c.C427T p.R143X TCAGTCGAGACAC 75 16 0.21 72 0 0 24 20 3 0.15 ITPR1 3708 mdanderson.org 37 3 4730230 4730230 + Nonsense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001099952 exon31 c.C3727T p.Q1243X TTTTTGCAGAATT 50 3 0.06 65 0 0 2 0 0.00 ITPR1 3708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 4810414 4810414 + Missense_Mutation SNP A A G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001168272 exon45 c.A5900G p.Q1967R TCCTTCAGCTCCT 189 43 0.23 267 0 0 15 2 0.13 ZNF717 100131827 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 75786560 75786560 + Missense_Mutation SNP T T G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . ZNF717 NM_001128223 exon5 c.A2214C p.K738N ACAAGGTTTTTCC 71 21 0.30 66 0 0 160 14 4 0.29 C3orf36 80111 mdanderson.org 37 3 133647172 133647172 + Missense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_025041 exon1 c.G476A p.G159D GCTCTGCCTTGAG 40 3 0.08 50 0 0 0 0 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 bycluster TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d PIK3CA_ENST00000263967,NS,carcinoma,0,1370 PIK3CA_ENST00000263967 NM_006218 exon10 c.G1633A p.E545K ATCACTGAGCAGG 315 81 0.26 348 0 0 0 1370 38 13 0.34 HOPX 84525 mdanderson.org 37 4 57522142 57522142 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001145460 exon3 c.C79A p.P27T CTGTGGGGCCGCT 42 3 0.07 26 0 0 9 0 0.00 COX18 285521 broad.mit.edu;mdanderson.org 37 4 73935349 73935349 + Silent SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . COX18 NM_173827 exon1 c.C18T p.G6G CCGACCGCCGAGC 14 4 0.29 15 0 0 20 20 5 0.25 SDHA 6389 hgsc.bcm.edu 37 5 256508 256508 + Silent SNP C C T rs3211499 TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d SDHA,NS,carcinoma,+2,1 SDHA NM_004168 exon15 c.C1968T p.T656T TGCCACCGTCCCG 104 6 0.06 161 1 0.0062111801 2 1 193 2 0.01 CTNND2 1501 mdanderson.org 37 5 11098816 11098816 + Silent SNP T T C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001332 exon15 c.A2508G p.K836K GATCCCTTTTGGT 52 3 0.06 86 0 0 5 0 0.00 PDZD2 23037 mdanderson.org 37 5 32089541 32089541 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_178140 exon19 c.G5987T p.G1996V AGCAAGGCATGTG 31 3 0.10 55 0 0 3 0 0.00 DND1 373863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140052912 140052912 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_194249 exon2 c.C86A p.T29K ATGCCTGTCTCCC 46 18 0.39 82 0 0 317 131 0.41 TCOF1 6949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 149776279 149776279 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001135243 exon24 c.G4216T p.G1406W GGGAAGGGGTCTC 61 15 0.25 131 0 0 343 168 0.49 DDX41 51428 mdanderson.org 37 5 176938912 176938912 + Silent SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_016222 exon17 c.C1749A p.A583A GCAGAAGGCACAG 23 2 0.09 50 0 0 281 0 0.00 DEK 7913 bcgsc.ca 37 6 18264096 18264096 + Missense_Mutation SNP C C G rs147127829 bycluster;byfrequency;by1000genomes TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . DEK NM_003472 exon2 c.G123C p.E41D CTCCTCCTCGTCG 107 6 0.06 129 2 0.015503876 31 141 2 0.01 HIST1H3C 8352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26045834 26045834 + Silent SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_003531 exon1 c.C196T p.L66L CGGAAGCTGCCGT 100 27 0.27 118 0 0 135 37 0.27 LINC00336 401253 mdanderson.org 37 6 33555397 33555397 + RNA SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . . . . . TTACCCGTGAAAG 49 3 0.06 65 0 0 0 0 PI16 221476 mdanderson.org 37 6 36926939 36926939 + Missense_Mutation SNP G G A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_153370 exon2 c.G190A p.A64T GAGCTGGCCGCCT 36 3 0.08 63 0 0 5 0 0.00 COL12A1 1303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 75904580 75904580 + Missense_Mutation SNP C C A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_004370 exon3 c.G157T p.V53L AACCCACAATTGG 114 27 0.24 92 0 0 0 0 FRMD1 79981 mdanderson.org 37 6 168479734 168479734 + Missense_Mutation SNP C C T rs148792644 bycluster;by1000genomes TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_024919 exon1 c.G41A p.R14Q TTTGTCCGGGCGG 45 3 0.07 56 0 0 0 0 0 PPP1R17 10842 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 7 31735181 31735181 + Nonsense_Mutation SNP A A T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_006658 exon3 c.A181T p.K61X GACCAAAAAAAAC 228 18 0.08 143 0 0 0 0 UPK3BL 100134938 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 102279619 102279619 + Missense_Mutation SNP T T G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d UPK3BL,NS,carcinoma,-2,4 UPK3BL NM_001114403 exon4 c.A513C p.E171D GGGTCCTTCGTCA 554 30 0.05 613 0 0 -2 4 162 7 0.04 CPED1 79974 broad.mit.edu;bcgsc.ca 37 7 120782123 120782149 + In_Frame_Del DEL ACTCACCATCTATAGAGAAGACCGCCC ACTCACCATCTATAGAGAAGACCGCCC - novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 ACTCACCATCTATAGAGAAGACCGCCC ACTCACCATCTATAGAGAAGACCGCCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001105533 exon15 c.1983_2009del p.661_670del GTACAAACTCACC 118 8 0.07 116 0 0 1 0 0.00 C7orf29 113763 mdanderson.org 37 7 150027939 150027939 + Missense_Mutation SNP A A G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_138434 exon1 c.A446G p.E149G AGGGGGAGCCTCT 23 2 0.09 46 1 0.0217391304 11 0 0.00 AGAP3 116988 mdanderson.org 37 7 150813895 150813895 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_031946 exon2 c.G347T p.S116I TGAACAGCCAGGA 45 3 0.07 74 0 0 20 0 0.00 SNTG1 54212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 51503445 51503445 + Missense_Mutation SNP A A G rs370352160 alternate_allele TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_018967 exon13 c.A817G p.K273E ATTAAAAAAATCA 844 129 0.15 662 1 0.001510574 0 0 TATDN1 83940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 125520903 125520903 + Nonsense_Mutation SNP G G C novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_032026 exon7 c.C416G p.S139X TGTTCTGACAGTT 259 46 0.18 177 0 0 248 14 0.06 KCNK9 51305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 140630919 140630919 + Missense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_016601 exon2 c.G707A p.G236E AAGGCCCCGATGA 104 14 0.13 85 0 0 0 0 ADAMTSL1 92949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 18775867 18775867 + Missense_Mutation SNP A A T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001040272 exon18 c.A2524T p.R842W TCCATCAGGCCCT 62 13 0.21 83 0 0 0 0 TMOD1 7111 broad.mit.edu 37 9 100361953 100361953 + Missense_Mutation SNP C C G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . TMOD1 NM_001166116 exon10 c.C1053G p.I351M GCCCATCATTCCC 142 3 0.02 114 0 0 29 70 1 0.01 BAAT 570 broad.mit.edu 37 9 104133369 104133369 + Missense_Mutation SNP T T A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . BAAT NM_001127610 exon2 c.A318T p.K106N ATAAAGTTTTACT 195 6 0.03 176 0 0 52 0 0 FUBP3 8939 mdanderson.org 37 9 133510064 133510064 + Silent SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_003934 exon17 c.C1521T p.S507S GCAGAGCCAGCCG 44 3 0.07 39 0 0 212 0 0.00 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139396539 139396539 + Missense_Mutation SNP G G T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_017617 exon29 c.C5386A p.P1796T TCAGGGGCCTGGG 47 29 0.62 46 0 0 18 7 0.39 RPGR 6103 mdanderson.org 37 X 38186593 38186593 + Missense_Mutation SNP C C T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001034853 exon1 c.G28A p.D10N ACTCACCGGGCAT 23 2 0.09 18 0 0 36 1 0.03 IQSEC2 23096 broad.mit.edu 37 X 53263992 53263992 + Silent SNP T T G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . IQSEC2 NM_001111125 exon15 c.A3876C p.P1292P GGGAGGTGGGGGA 19 6 0.32 24 2 0.0833333333 195 47 0 0.00 AWAT2 158835 broad.mit.edu 37 X 69263370 69263370 + Missense_Mutation SNP A A G novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . AWAT2 NM_001002254 exon4 c.T430C p.F144L AGAAAAAGGCTCC 132 3 0.02 122 0 0 36 5 0 0.00 GPRASP1 9737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 101909826 101909826 + Missense_Mutation SNP A A T novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001099411 exon3 c.A985T p.N329Y GCCAATAACAGGG 35 15 0.43 31 0 0 3 2 0.67 GPRASP1 9737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 101909834 101909834 + Silent SNP C C A novel TCGA-XE-A8H5-01A-11D-A435-10 TCGA-XE-A8H5-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 665a50ed-6767-411a-b99d-7e994cbe5e17 0ff8a73f-f639-4798-82f0-852d9c183b9d . . NM_001099411 exon3 c.C993A p.A331A CAGGGCCAGGCAC 31 14 0.45 32 0 0 5 2 0.40