Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV GLTPD1 80772 mdanderson.org 37 1 1262375 1262375 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001029885 exon2 c.C85T p.L29L GTCTTGCTGGACC 39 3 0.08 64 0 0 51 0 0.00 RPL22 6146 mdanderson.org 37 1 6253102 6253102 + Nonsense_Mutation SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_000983 exon3 c.C130T p.Q44X TTTCTTGCAAAAA 32 3 0.09 33 0 0 2901 0 0.00 MST1P2 11209 hgsc.bcm.edu;bcgsc.ca 37 1 16976573 16976573 + RNA SNP A A G novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . AGGGTGACTACGG 216 17 0.08 392 0 0 2 0 0.00 MST1L 0 broad.mit.edu 37 1 17083884 17083884 + RNA SNP T T C novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001271733 exon15 c.A1913G p.D638G CCGTAGTCACCCT 191 15 0.08 337 0 0 2 0 0.00 CROCC 9696 broad.mit.edu 37 1 17280821 17280821 + Missense_Mutation SNP G G C rs6669627 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . CROCC NM_014675 exon22 c.G3290C p.R1097P AGAAACGAGATGC 41 8 0.20 76 0 0 185 80 1 0.01 AIM1L 55057 mdanderson.org 37 1 26664517 26664517 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001039775 exon8 c.C3493A p.P1165T CCCCTGGCTTCTC 39 3 0.08 87 0 0 0 0 CSMD2 114784 mdanderson.org 37 1 33998696 33998696 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_052896 exon63 c.C9693A p.T3231T CTTGCAGGTGCGG 20 2 0.10 28 0 0 5 0 0.00 LOC100129620 0 broad.mit.edu 37 1 99474094 99474094 + RNA DEL A A - novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . GCAACTAAAAAAA 5 2 0.40 5 0 0 1 0 0.00 HSD3B1 3283 mdanderson.org 37 1 120054150 120054150 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_000862 exon3 c.C170T p.T57I AGCTGACAGTGCT 34 3 0.09 42 0 0 0 0 NMT2 9397 mdanderson.org 37 10 15174829 15174829 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_004808 exon6 c.C706A p.R236R AAATCCGAATGTT 51 3 0.06 59 0 0 15 0 0.00 COMMD3-BMI1 0 mdanderson.org 37 10 22615381 22615381 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001204062 exon6 c.G432T p.M144I AGAAATGCATCGA 25 3 0.12 47 0 0 57 0 0.00 BMS1 9790 broad.mit.edu 37 10 43318571 43318571 + Missense_Mutation SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 BMS1,NS,carcinoma,0,2 BMS1 NM_014753 exon20 c.G3138A p.M1046I GGGAATGTTTAAT 41 3 0.07 66 1 0.0151515152 132 2 86 0 0.00 TET1 80312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 70332658 70332658 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_030625 exon2 c.C563T p.T188I AAGAGACAACTCA 43 10 0.23 46 0 0 9 3 0.33 PIDD 55367 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 802283 802283 + Missense_Mutation SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_145887 exon6 c.C1088T p.P363L GGCTCCGGCAGCA 61 14 0.23 60 0 0 47 16 0.34 RPLP0P2 0 broad.mit.edu 37 11 61405192 61405192 + RNA SNP G G A rs201678804 TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . AAAAAAGAAAAGA 27 4 0.15 42 0 0 0 0 AHNAK 79026 hgsc.bcm.edu 37 11 62294254 62294254 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 AHNAK,NS,carcinoma,-1,1 AHNAK NM_001620 exon5 c.G7635A p.K2545K GTCCACCTTGGGT 71 3 0.04 117 0 0 -1 1 137 1 0.01 HNRNPUL2-BSCL2 0 mdanderson.org 37 11 62473796 62473796 + RNA SNP T T C novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . CGCCCCTCTCCGC 12 4 0.33 16 0 0 0 0 DYNC2H1 79659 mdanderson.org 37 11 102992194 102992194 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001377 exon10 c.G1454T p.S485I TCAACAGTATAGT 42 3 0.07 55 0 0 2 0 0.00 ERC1 23085 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 1137370 1137370 + Missense_Mutation SNP G G A rs370287516 TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_178039 exon2 c.G301A p.G101S CCTTACGGTGTTC 136 9 0.07 85 0 0 30 1 0.03 PTPRO 5800 broad.mit.edu;bcgsc.ca 37 12 15669735 15669742 + Frame_Shift_Del DEL GGTCCTAC GGTCCTAC - novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 GGTCCTAC GGTCCTAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . PTPRO NM_002848 exon9 c.1624_1631del p.542_544del CCTTTGGGTCCTA 250 8 0.03 99 0 0 148 43 0 0.00 PTPRO 5800 bcgsc.ca 37 12 15669741 15669742 + Frame_Shift_Ins INS - - TTTAATG novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 PTPRO,NS,carcinoma,-2,1 PTPRO NM_002848 exon9 c.1630_1631insTTTAATG p.T544_A545delinsIX GGTCCTACGGCCG 243 6 0.02 102 0 0 148 1 47 0 0.00 PTPRO 5800 bcgsc.ca 37 12 15669742 15669743 + Frame_Shift_Ins INS - - TCTATCCTTTG novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 PTPRO,NS,carcinoma,-1,1 PTPRO NM_002848 exon9 c.1631_1632insTCTATCCTTTG p.T544fs GTCCTACGGCCGT 240 6 0.03 101 0 0 148 1 47 0 0.00 FAM186A 121006 broad.mit.edu 37 12 50746140 50746140 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . FAM186A NM_001145475 exon4 c.G4475A p.G1492E GGGATCCCCAATT 142 7 0.05 155 1 0.0064516129 181 0 0 KRT80 144501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52567452 52567452 + Missense_Mutation SNP C C A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_182507 exon5 c.G763T p.V255L CCTTCACCTCCTC 47 11 0.23 45 0 0 9 4 0.44 SLC16A7 9194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 60168593 60168593 + Missense_Mutation SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001270622 exon5 c.G517A p.G173S ACTTTTGGCTGGA 90 31 0.34 74 0 0 0 0 TRPV4 59341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 110230496 110230496 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_021625 exon11 c.G1785A p.G595G CTTCAGCCCACGG 84 25 0.30 73 0 0 38 10 0.26 SRRM4 84530 mdanderson.org 37 12 119568524 119568524 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_194286 exon8 c.G656T p.R219L CCCGCCGAAGGCA 27 2 0.07 19 0 0 9 0 0.00 MTIF3 219402 ucsc.edu 37 13 28014392 28014392 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . MTIF3 NM_001166263 exon4 c.G194A p.G65E TTTTTTCCTTCAT 74 1 0.01 123 0 0 21 111 12 0.11 MYH6 4624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 23874338 23874338 + Splice_Site SNP T T C novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_002471 exon7 c.503-2A>G . CCGATCTGGAAGA 60 22 0.37 73 0 0 0 0 FOXA1 3169 mdanderson.org 37 14 38061627 38061627 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_004496 exon2 c.C362A p.A121E GAGGCCGCCTGCT 13 2 0.15 18 0 0 5 0 0.00 FOS 2353 mdanderson.org 37 14 75747998 75747998 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_005252 exon4 c.G1014T p.T338T TTACACGTCTTCC 35 3 0.09 50 0 0 958 0 0.00 . 0 bcgsc.ca 37 15 23182145 23182145 + RNA SNP A A G rs371836 byfrequency TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . ACATCCAGTGAGT 29 5 0.17 44 0 0 3 0 0.00 . 0 bcgsc.ca 37 15 23182149 23182149 + RNA SNP A A G rs371829 bycluster;byfrequency TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . CCAGTGAGTGGAT 27 6 0.22 43 1 0.023255814 3 1 0.33 FAN1 22909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 31217365 31217365 + Silent SNP G G A rs141117593 TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_014967 exon9 c.G2208A p.P736P GGATCCGGAAGTC 36 15 0.42 62 0 0 0 31 13 0.42 MGA 23269 ucsc.edu;bcgsc.ca 37 15 42058685 42058685 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . MGA NM_001164273 exon24 c.C8405T p.A2802V AGGAAGCAGCTCT 39 4 0.10 55 0 0 264 26 0 0.00 UACA 55075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 70976695 70976695 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 UACA_ENST00000322954,right_upper_lobe,carcinoma,-1,3 UACA_ENST00000322954 NM_018003 exon8 c.G693A p.A231A GCCAAGCGCATCC 89 23 0.26 84 0 0 -1 3 70 16 0.23 SEC11A 23478 mdanderson.org 37 15 85234840 85234840 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001271921 exon2 c.C87A p.V29V CGATGAGACAATC 75 4 0.05 89 1 0.0112359551 468 0 0.00 CACNA1H 8912 mdanderson.org 37 16 1260952 1260952 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_021098 exon21 c.C4204T p.R1402W CTGCTGCGGACCC 23 3 0.13 19 0 0 35 0 0.00 SRRM2 23524 bcgsc.ca;mdanderson.org 37 16 2819139 2819139 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . SRRM2 NM_016333 exon12 c.C7875T p.S2625S CTCCTCCTCTTCT 68 5 0.07 64 1 0.015625 263 719 3 0.00 PRSS33 260429 mdanderson.org 37 16 2835120 2835120 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_152891 exon5 c.C567A p.D189E GCGCGAGTCCAGC 18 3 0.17 27 0 0 11 0 0.00 C16orf62 57020 broad.mit.edu 37 16 19612991 19612991 + Missense_Mutation SNP C C A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . C16orf62 NM_020314 exon9 c.C997A p.L333I GGAAAGCTCGTGT 66 4 0.06 86 1 0.011627907 164 65 3 0.05 C16orf88 400506 mdanderson.org 37 16 19718523 19718523 + Nonsense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001012991 exon5 c.G1086A p.W362X AGTATCCCACTGG 40 3 0.08 40 0 0 110 0 0.00 SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 30723654 30723654 + Silent SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 SRCAP,bladder,carcinoma,+2,1 SRCAP NM_006662 exon13 c.G1887A p.L629L CTGGCTGGTTACC 65 16 0.25 83 0 0 2 1 37 12 0.32 ARMC5 79798 mdanderson.org 37 16 31473510 31473510 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001105247 exon3 c.G642T p.Q214H CCTACAGAGCGTG 27 4 0.15 32 0 0 47 0 0.00 WDR81 124997 broad.mit.edu;ucsc.edu;mdanderson.org 37 17 1631599 1631599 + Missense_Mutation SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . WDR81 NM_001163809 exon1 c.G3346A p.E1116K ACCAGCGAGACCT 48 16 0.33 63 2 0.0317460317 180 31 7 0.23 GAS2L2 246176 broad.mit.edu 37 17 34077157 34077157 + Missense_Mutation SNP T T G novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 GAS2L2,right_upper_lobe,carcinoma,0,2 GAS2L2 NM_139285 exon2 c.A566C p.D189A GAGGGGTCGGGCG 64 33 0.52 60 18 0.3 94 2 5 0 0.00 LOC440434 0 broad.mit.edu;bcgsc.ca 37 17 36353755 36353755 + Missense_Mutation SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . AGATGAGTCCACC 85 7 0.08 122 0 0 41 5 0.12 EMILIN2 84034 ucsc.edu 37 18 2913106 2913106 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . EMILIN2 NM_032048 exon8 c.G2866T p.A956S ATCACGGCCACCC 33 4 0.12 45 0 0 97 31 0 0.00 OSBPL1A 114876 mdanderson.org 37 18 21747306 21747306 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_080597 exon25 c.C2522A p.P841Q GAATTTGGAGGCC 68 5 0.07 122 0 0 57 0 0.00 KCTD1 284252 mdanderson.org 37 18 24127791 24127791 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001142730 exon1 c.G710A p.R237H AGGTAGCGGTTGA 14 2 0.14 12 0 0 30 0 0.00 ZNF236 7776 bcgsc.ca 37 18 74637144 74637144 + Splice_Site SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . ZNF236 NM_007345 exon22 c.3656-1G>T . TTCACAGGTCAGA 46 4 0.09 70 0 0 325 0 0 OLFM2 93145 mdanderson.org 37 19 9965327 9965327 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_058164 exon6 c.G900A p.V300V CCTCTGCACCAGC 42 3 0.07 56 0 0 313 0 0.00 PRKCSH 5589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11546956 11546956 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001001329 exon2 c.G18T p.L6L GCTGCTGCTGCTG 25 11 0.44 20 0 0 785 318 0.41 ZNF333 84449 bcgsc.ca 37 19 14817526 14817526 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . ZNF333 NM_032433 exon7 c.G452T p.R151M TTCAGAGGGTGGT 37 4 0.11 34 0 0 76 18 0 0.00 ERCC1 2067 ucsc.edu;bcgsc.ca 37 19 45918201 45918201 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . ERCC1 NM_001983 exon7 c.G620A p.R207Q AGGTACCGCCCAG 30 4 0.13 57 0 0 46 369 0 0.00 LIG1 3978 mdanderson.org 37 19 48636323 48636323 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_000234 exon18 c.C1641A p.P547P CCGGGTGGGATGG 42 3 0.07 77 0 0 111 0 0.00 DNMT3A 1788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25505572 25505572 + Silent SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_175630 exon4 c.C186T p.S62S GTCACCGCTTTCC 95 26 0.27 113 0 0 48 15 0.31 EMILIN1 11117 mdanderson.org 37 2 27305627 27305627 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_007046 exon4 c.C1188T p.H396H AGGCCACCCCCCA 10 2 0.20 9 0 0 705 1 0.00 MTA3 57504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 42836614 42836614 + Silent SNP A A G rs201096010 bycluster;alternate_allele TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_020744 exon4 c.A207G p.E69E GGAAGAATCTGAA 110 32 0.29 117 0 0 95 29 0.31 SPEG 10290 mdanderson.org 37 2 220347856 220347856 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_005876 exon30 c.C5671T p.R1891C GTGCTGCGCCCCA 43 3 0.07 40 0 0 9 0 0.00 SNRPB 6628 broad.mit.edu 37 20 2443298 2443298 + Silent SNP A A G novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . SNRPB NM_003091 exon6 c.T669C p.P223P AGGGGGAGGAGGC 111 4 0.04 125 0 0 29 592 1 0.00 . 0 broad.mit.edu 37 20 10869748 10869748 + RNA DEL T T - novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . TTTTTATTTTTTT 6 2 0.33 9 0 0 0 0 REM1 28954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 30064434 30064434 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_014012 exon2 c.C186T p.A62A ACCTGCCCCAGAT 125 24 0.19 131 0 0 8 2 0.25 ZNF512B 57473 mdanderson.org 37 20 62595514 62595514 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_020713 exon8 c.C1390A p.P464T GGCCTGGCCCCTC 39 3 0.08 46 0 0 91 0 0.00 MIR3648 0 broad.mit.edu 37 21 9825838 9825839 + RNA INS - - GCG rs372061766 bycluster TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . CGCGACTGCGGCG 10 4 0.40 8 0 0 0 0 . 0 broad.mit.edu 37 22 18842958 18842958 + RNA SNP G G T rs3875977 bycluster;byfrequency TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . GAGGTGGCCTGGG 22 3 0.14 45 0 0 0 0 SMC1B 27127 broad.mit.edu 37 22 45798264 45798264 + Missense_Mutation SNP T T C novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . SMC1B NM_148674 exon5 c.A803G p.K268R TGTTCCTTTTTCC 109 3 0.03 116 0 0 215 1 0 0.00 TBC1D22A 25771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 47287258 47287258 + Missense_Mutation SNP A A T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_014346 exon6 c.A805T p.N269Y TCTAGGAACGACG 155 29 0.19 187 0 0 61 16 0.26 CAND2 23066 mdanderson.org 37 3 12851759 12851759 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001162499 exon5 c.G693T p.P231P CAGCCCGACTGCC 20 2 0.10 17 0 0 6 1 0.17 VILL 50853 mdanderson.org 37 3 38035877 38035877 + Silent SNP G G T rs370182077 TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_015873 exon3 c.G261T p.L87L CGAGCTGGGGGGC 48 3 0.06 65 0 0 9 0 0.00 ARIH2 10425 bcgsc.ca;mdanderson.org 37 3 48999100 48999100 + Missense_Mutation SNP A A T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . ARIH2 NM_006321 exon4 c.A311T p.E104V TTTCAGAGATATT 77 5 0.06 82 0 0 32 59 0 0.00 CACNA2D2 9254 mdanderson.org 37 3 50431589 50431589 + Missense_Mutation SNP T T C novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_006030 exon4 c.A416G p.D139G GCAGCATCAGCCA 49 3 0.06 46 0 0 47 0 0.00 DOCK3 1795 broad.mit.edu;mdanderson.org 37 3 51251594 51251594 + Nonsense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . DOCK3 NM_004947 exon14 c.C1168T p.Q390X ATGGAACAGATTC 117 6 0.05 118 0 0 397 21 0 0.00 GLYCTK 132158 mdanderson.org 37 3 52326663 52326663 + Missense_Mutation SNP G G T rs200573074 alternate_allele TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_145262 exon5 c.G1093T p.G365W ATGGCTGGGGCTT 43 3 0.07 42 0 0 18 0 0.00 LPHN3 23284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 62679544 62679544 + Nonsense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_015236 exon6 c.C1213T p.Q405X CATGGACAAGTTT 89 30 0.34 78 0 0 20 1 0.05 PRLR 5618 mdanderson.org 37 5 35068387 35068387 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001204316 exon8 c.C786A p.S262R CACCATGCTATAA 33 3 0.09 70 0 0 3 0 0.00 DIAPH1 1729 ucsc.edu 37 5 140953699 140953699 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . DIAPH1 NM_005219 exon16 c.C1718A p.P573H GAAGGAGGTACAG 41 4 0.10 66 0 0 64 32 0 0.00 CCNJL 79616 mdanderson.org 37 5 159707575 159707575 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_024565 exon3 c.C237A p.S79S CTGCTTGGAGGTG 21 2 0.10 58 0 0 10 0 0.00 HLA-F 3134 bcgsc.ca 37 6 29694891 29694891 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . HLA-F NM_001098479 exon7 c.G1268T p.S423I GCAGGAGCTTCCT 52 5 0.10 45 0 0 41 10 0 0.00 UBR2 23304 broad.mit.edu;bcgsc.ca 37 6 42582883 42582894 + In_Frame_Del DEL AGACTGATGCTT AGACTGATGCTT - novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 AGACTGATGCTT AGACTGATGCTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . UBR2 NM_001184801 exon9 c.1060_1071del p.354_357del GTGGACAGACTGA 67 7 0.10 82 0 0 134 10 0 0.00 KLHDC3 116138 broad.mit.edu;ucsc.edu;mdanderson.org 37 6 42985044 42985044 + Nonsense_Mutation SNP T T G novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . KLHDC3 NM_057161 exon2 c.T114G p.Y38X AGACTATGAGACA 48 13 0.27 53 1 0.0188679245 23 249 40 0.16 GSTA4 2941 mdanderson.org 37 6 52859034 52859034 + Missense_Mutation SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001512 exon2 c.C8T p.A3V GGCCTTGCTGCCA 34 3 0.09 44 0 0 206 0 0.00 TBX18 9096 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 85473885 85473885 + Silent SNP T T A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . TBX18 NM_001080508 exon1 c.A15T p.R5R GCCCCTTCGCTTC 21 4 0.19 19 0 0 131 2 1 0.50 RARS2 57038 broad.mit.edu 37 6 88251684 88251684 + Frame_Shift_Del DEL A A - novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . RARS2 NM_020320 exon8 c.564delT p.F188fs ATAGCCAAACAGC 37 8 0.22 28 0 0 61 51 0 0.00 EYA4 2070 broad.mit.edu 37 6 133804227 133804227 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . EYA4 NM_172105 exon13 c.G1165T p.G389W CTCACCGGGTCTT 160 4 0.03 150 0 0 196 34 0 0.00 FRMD1 79981 broad.mit.edu 37 6 168461656 168461656 + Missense_Mutation SNP A A C novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . FRMD1 NM_024919 exon9 c.T1127G p.V376G CTGCTGACCCCAC 77 24 0.31 84 19 0.2261904762 52 0 0 SP8 221833 mdanderson.org 37 7 20824970 20824970 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_182700 exon2 c.G466A p.G156S CGCCGCCGCTGCC 37 3 0.08 33 0 0 2 0 0.00 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 55273210 55273210 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_005228 exon28 c.C3533T p.P1178L TCTTTCCCAAGGA 162 38 0.23 137 0 0 19 4 0.21 LRRD1 401387 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 91793802 91793802 + Missense_Mutation SNP G G C novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001161528 exon1 c.C715G p.L239V AAAAGAGTTGTCT 152 27 0.18 189 0 0 0 0 SYPL1 6856 mdanderson.org 37 7 105752945 105752945 + Missense_Mutation SNP G G A novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_006754 exon1 c.C31T p.R11W TGATCCGCTGGCG 21 2 0.10 33 0 0 4 0 0.00 . 0 broad.mit.edu 37 7 128210684 128210685 + RNA INS - - T rs201622560 by1000genomes TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . CCATGACCATCCT 12 5 0.42 11 0 0 2 0 0.00 . 0 broad.mit.edu 37 7 128210686 128210687 + RNA DEL AT AT - novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 AT AT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . ATGACCATCCTCC 11 5 0.45 10 0 0 2 0 0.00 EPHB6 2051 mdanderson.org 37 7 142566831 142566831 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_004445 exon16 c.G2388T p.L796L CTCGCTGTCTGCC 40 3 0.08 52 0 0 82 0 0.00 KEL 3792 mdanderson.org 37 7 142639975 142639975 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_000420 exon17 c.C1928A p.A643D GCGATGGCTAGCC 45 3 0.07 58 0 0 2 0 0.00 MFHAS1 9258 broad.mit.edu;mdanderson.org 37 8 8749747 8749747 + Silent SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . MFHAS1 NM_004225 exon1 c.G822A p.R274R TTTGAGCCGCTGC 20 3 0.15 30 0 0 58 21 0 0.00 NPBWR1 2831 mdanderson.org 37 8 53852980 53852980 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_005285 exon1 c.G513T p.L171L CGTGCTGCCCTTC 12 2 0.17 21 0 0 0 0 PREX2 80243 mdanderson.org 37 8 69002939 69002939 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_025170 exon20 c.C2239T p.R747W TACAGGCGGCCAA 41 3 0.07 27 0 0 12 0 0.00 TRPA1 8989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 72987612 72987612 + Silent SNP A A T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_007332 exon1 c.T33A p.P11P TTCTCCAGGGCGC 32 6 0.19 32 0 0 4 4 1.00 CNBD1 168975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 88363932 88363932 + Silent SNP T T C novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_173538 exon9 c.T1062C p.N354N TGGAAATATAATT 71 11 0.15 50 0 0 0 0 . 0 bcgsc.ca 37 9 12288078 12288078 + RNA SNP A A G rs10960566 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . . . . . TACTTCATGCCCG 10 6 0.60 18 0 0 0 0 FAM219A 203259 mdanderson.org 37 9 34405956 34405956 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_147202 exon2 c.G67A p.A23T CGGCGGCTGGGTC 44 3 0.07 29 0 0 38 0 0.00 FAM205A 259308 mdanderson.org 37 9 34726543 34726543 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001141917 exon4 c.C694A p.L232M GGTTCAGTGGAGC 47 3 0.06 41 0 0 0 0 KIAA1958 158405 mdanderson.org 37 9 115336895 115336895 + Missense_Mutation SNP C C A rs186262765 bycluster;by1000genomes;alternate_allele TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_133465 exon2 c.C535A p.P179T GTAGTCCCATCTT 41 3 0.07 70 0 0 9 0 0.00 C5 727 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 123794397 123794397 + Missense_Mutation SNP C C T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001735 exon6 c.G661A p.E221K CATATTCTTTAAC 34 15 0.44 59 0 0 0 0 NTMT1 28989 mdanderson.org 37 9 132395063 132395063 + Silent SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_014064 exon2 c.G81T p.V27V CACGGTGGACGGC 45 3 0.07 71 0 0 73 0 0.00 LAMC3 10319 bcgsc.ca 37 9 133914313 133914313 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . LAMC3 NM_006059 exon5 c.G1039T p.G347C AGCACAGGCCACG 43 4 0.09 64 0 0 167 35 0 0.00 CEL 1056 mdanderson.org 37 9 135939866 135939866 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001807 exon2 c.G151T p.D51Y TCTGTGGACATCT 41 3 0.07 59 0 0 83 0 0.00 PNPLA7 375775 mdanderson.org 37 9 140374861 140374861 + Missense_Mutation SNP A A T rs1891630 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_001098537 exon23 c.T2483A p.V828E CCATCTACCTGGT 45 2 0.04 73 0 0 2 0 0.00 HUWE1 10075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53579361 53579361 + Missense_Mutation SNP G G T novel TCGA-XE-AANI-01A-11D-A435-10 TCGA-XE-AANI-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq be4df9d3-88c9-42ae-9752-179602eb36db 168dc95b-9014-4cb0-9d44-1e0e2d747959 . . NM_031407 exon63 c.C8792A p.S2931Y ACGGCAGAATCTC 149 57 0.38 101 0 0 189 79 0.42