Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MIB2 142678 ucsc.edu;bcgsc.ca 37 1 1564101 1564101 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . MIB2 NM_080875 exon16 c.G2546T p.R849M TGTCCAGGGTGAG 37 4 0.11 35 0 0 62 40 0 0.00 PRDM2 7799 hgsc.bcm.edu 37 1 14105122 14105124 + In_Frame_Del DEL GAA GAA - novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 GAA GAA Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 PRDM2,colon,carcinoma,0,1 PRDM2 NM_015866 exon8 c.831_833del p.277_278del GAGGATGAAGAAG 149 10 0.07 150 0 0 147 1 0 0.00 COL11A1 1301 broad.mit.edu 37 1 103491776 103491776 + Missense_Mutation SNP G G C novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 COL11A1_ENST00000370096,NS,carcinoma,+1,2 COL11A1 NM_080630 exon6 c.C893G p.T298R ACCTCCGTCTGTG 215 6 0.03 248 0 0 972 2 7 0 0.00 NBPF10 100132406 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 145326040 145326040 + Missense_Mutation SNP G G C novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001039703 exon30 c.G3913C p.E1305Q TGTCTTGAACTGA 70 17 0.24 73 0 0 0 0 ILDR2 387597 mdanderson.org 37 1 166890612 166890612 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_199351 exon9 c.C1216T p.P406S AGCGCGGCTGGCT 21 2 0.10 29 0 0 0 0 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186056429 186056429 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 HMCN1,NS,carcinoma,0,2 HMCN1 NM_031935 exon59 c.G9127A p.E3043K GCTGGCGAAAGCA 175 30 0.17 221 0 0 0 2 1 0 0.00 PTGS2 5743 broad.mit.edu 37 1 186645692 186645692 + Silent SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 PTGS2_ENST00000367468,NS,carcinoma,0,4 PTGS2 NM_000963 exon7 c.C877A p.R293R GTTCCCGCAGCCA 101 4 0.04 112 0 0 144 4 2 0 0.00 KCNMA1 3778 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 79163700 79163700 + Missense_Mutation SNP C C T rs142858967 bycluster;byfrequency;alternate_allele TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 KCNMA1_ENST00000406533,colon,adenoma,0,4 KCNMA1 NM_002247 exon2 c.G460A p.A154T CCTCGGCGGCCAC 50 5 0.10 81 0 0 370 4 2 0 0.00 FRA10AC1 118924 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 95458121 95458121 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . FRA10AC1 NM_145246 exon3 c.C110A p.P37Q TGAAATGGTTTTT 89 5 0.06 123 1 0.0081300813 68 20 0 0.00 ARHGAP19 84986 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 99023294 99023294 + Missense_Mutation SNP A A C novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001204300 exon4 c.T496G p.L166V ATTCCAAGTCAAT 137 8 0.06 145 0 0 3 0 0.00 PIDD 55367 broad.mit.edu 37 11 802595 802595 + Missense_Mutation SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . PIDD NM_145887 exon5 c.G922A p.A308T GGGCTGCCACTGT 184 5 0.03 223 0 0 76 29 0 0.00 PACSIN3 29763 mdanderson.org 37 11 47202014 47202014 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001184975 exon5 c.C439A p.L147M CCTTCAGCCTCTT 49 3 0.06 38 0 0 42 0 0.00 NDUFV1 4723 mdanderson.org 37 11 67377004 67377004 + Missense_Mutation SNP C C A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 NDUFV1,NS,carcinoma,0,1 NDUFV1 NM_007103 exon4 c.C408A p.H136Q TCCTCACAAGCTG 40 3 0.08 36 0 0 0 1 314 0 0.00 MYEOV 26579 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 69063822 69063822 + Missense_Mutation SNP T T A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . MYEOV NM_138768 exon3 c.T905A p.L302H ACCACCTCCTCCT 82 5 0.06 107 1 0.0093457944 42 5 0 0.00 TECTA 7007 mdanderson.org 37 11 121061449 121061449 + Silent SNP G G T rs141203939 bycluster;by1000genomes TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_005422 exon23 c.G6402T p.T2134T CTGGACGCTTCTT 47 3 0.06 88 0 0 0 1 0 0.00 UBASH3B 84959 mdanderson.org 37 11 122526901 122526901 + Silent SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_032873 exon1 c.G144A p.G48G CATGGGGTTCCCC 46 3 0.07 69 0 0 12 0 0.00 GRIN2B 2904 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 13724765 13724765 + Missense_Mutation SNP T T A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_000834 exon10 c.A2144T p.D715V GCATCATCTACAC 238 21 0.09 153 0 0 0 0 CERS5 91012 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 50529846 50529846 + Frame_Shift_Del DEL G G - novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_147190 exon7 c.644delT p.L215fs TGATCAGGAAGTC 83 14 0.17 62 0 0 56 0 0.00 ZIC2 7546 mdanderson.org 37 13 100635045 100635045 + Missense_Mutation SNP T T C novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_007129 exon1 c.T727C p.F243L GGTGCCTTTTTCC 24 3 0.13 31 0 0 2 0 0.00 NKX2-8 26257 mdanderson.org 37 14 37050384 37050384 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_014360 exon2 c.C443T p.A148V GACTCCGCCGCCC 17 2 0.12 12 0 0 0 0 POLG 5428 mdanderson.org 37 15 89876841 89876841 + Missense_Mutation SNP G G T rs200132079 alternate_allele TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001126131 exon2 c.C145A p.Q49K GCTGCTGCTGCTG 18 2 0.11 17 0 0 7 0 0.00 RGMA 56963 broad.mit.edu 37 15 93588747 93588747 + Silent SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 RGMA,NS,carcinoma,0,2 RGMA NM_001166283 exon4 c.C858A p.G286G GGTGGTGCCGATG 99 6 0.06 88 2 0.0227272727 49 2 19 3 0.16 MSLN 10232 mdanderson.org 37 16 815169 815169 + Silent SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 MSLN_ENST00000446427,NS,carcinoma,0,2 MSLN_ENST00000446427 NM_005823 exon9 c.C570T p.C190C GGCTTGCGACCTG 24 2 0.08 23 0 0 0 2 1 0 0.00 ARMC5 79798 mdanderson.org 37 16 31476521 31476521 + Missense_Mutation SNP G G C novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_024742 exon4 c.G2177C p.X726S TGTCCTGACTGCT 60 3 0.05 60 0 0 1 0 0.00 HEATR3 55027 mdanderson.org 37 16 50112858 50112858 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_182922 exon7 c.G970T p.D324Y ATTGAAGATGATG 37 3 0.08 42 0 0 16 0 0.00 . 0 broad.mit.edu 37 16 90160793 90160793 + RNA SNP G G C rs185366455 bycluster;by1000genomes TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . . . . . CCGCTGGCACCTA 8 4 0.50 9 1 0.1111111111 1 0 0.00 PHF23 79142 broad.mit.edu;bcgsc.ca 37 17 7139505 7139506 + Frame_Shift_Del DEL AG AG - novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 AG AG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . PHF23 NM_024297 exon4 c.740_741del p.247_247del CTCTTCAGAGTCT 48 9 0.19 52 0 0 38 134 1 0.01 KDM6B 23135 mdanderson.org 37 17 7756632 7756632 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001080424 exon22 c.G4842T p.Q1614H CCTGCAGGGCGTG 24 2 0.08 39 0 0 18 0 0.00 MYH10 4628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 8439201 8439201 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001256012 exon15 c.C1654T p.P552S CTTTAGGGAACCA 125 17 0.14 143 0 0 6 2 0.33 ABHD15 116236 mdanderson.org 37 17 27893542 27893542 + Missense_Mutation SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_198147 exon1 c.G443A p.R148H ATCCGGCGGCCCC 57 3 0.05 45 0 0 9 0 0.00 ONECUT2 9480 mdanderson.org 37 18 55103650 55103650 + Silent SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_004852 exon1 c.C702T p.N234N GGGCAACGGGCTA 43 3 0.07 38 0 0 0 0 VAV1 7409 mdanderson.org 37 19 6826646 6826646 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001258206 exon9 c.G851A p.C284Y GCTACTGCAGCCA 32 3 0.09 38 0 0 43 0 0.00 ZNF317 57693 mdanderson.org 37 19 9268706 9268706 + Nonsense_Mutation SNP G G T rs200289169 TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_020933 exon5 c.G340T p.E114X GAGGAGGAGCCGA 40 3 0.08 39 0 0 11 0 0.00 COLGALT1 79709 mdanderson.org 37 19 17683358 17683358 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_024656 exon6 c.G896A p.S299N CCCACAGCACCCT 36 3 0.08 45 0 0 134 0 0.00 MAST3 23031 mdanderson.org 37 19 18241320 18241320 + Missense_Mutation SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_015016 exon13 c.C1153T p.R385W CTGGTGCGGCACC 51 3 0.06 50 0 0 7 0 0.00 MEGF8 1954 mdanderson.org 37 19 42873740 42873740 + Silent SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001271938 exon38 c.G6699T p.V2233V ATGTGTGGAGCCC 34 3 0.09 43 0 0 10 0 0.00 PPP2R1A 5518 mdanderson.org 37 19 52716240 52716240 + Nonsense_Mutation SNP C C A rs201531933 by1000genomes;alternate_allele TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_014225 exon6 c.C684A p.C228X GGCGTGCGTGAAC 33 3 0.09 37 0 0 321 0 0.00 MIR217 0 broad.mit.edu 37 2 56210465 56210465 + RNA DEL G G - novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . . . . . AAAATAGCTTTTT 6 2 0.33 7 0 0 0 0 TET3 200424 mdanderson.org 37 2 74307690 74307690 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_144993 exon3 c.G2246T p.S749I GAAAGAGCTCCCG 52 3 0.06 52 0 0 0 0 NR4A2 0 broad.mit.edu 37 2 157182338 157182338 + Missense_Mutation SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 NR4A2,NS,carcinoma,-1,1 NR4A2 NM_006186 exon8 c.G1715A p.R572H AAAATGCGCTGTA 185 4 0.02 185 0 0 82 1 10 0 0.00 FARSB 10056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 223507631 223507631 + Missense_Mutation SNP T T C novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_005687 exon3 c.A208G p.N70D ATCTATTGGCAGG 115 17 0.15 142 0 0 39 14 0.36 SOX12 0 broad.mit.edu 37 20 305267 305267 + RNA DEL A A - novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . SOX12 . . . . GCGCCCAAGTCGG 6 2 0.33 4 0 0 8 0 0 DNMT3B 1789 mdanderson.org 37 20 31386384 31386384 + Missense_Mutation SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 DNMT3B_ENST00000201963,NS,carcinoma,0,4 DNMT3B_ENST00000201963 NM_006892 exon15 c.C1609T p.R537W GTCCTGCGGCGCC 53 3 0.06 66 0 0 0 4 430 0 0.00 OGFR 11054 broad.mit.edu 37 20 61443978 61443978 + Silent SNP T T G novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . OGFR NM_007346 exon7 c.T1011G p.G337G CAAGGGTGGGGGC 53 8 0.15 53 5 0.0943396226 63 91 4 0.04 TRPM2 7226 mdanderson.org 37 21 45825863 45825863 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 TRPM2,right_upper_lobe,carcinoma,+1,1 TRPM2 NM_003307 exon18 c.G2733T p.M911I GCTCATGCACATT 43 3 0.07 24 0 0 1 1 13 0 0.00 TRPM2 7226 mdanderson.org 37 21 45861630 45861630 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_003307 exon32 c.G4442T p.R1481L ACAGGCGCATCCC 49 3 0.06 35 0 0 77 0 0.00 CBX6 23466 mdanderson.org 37 22 39262865 39262865 + Silent SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_014292 exon5 c.G588A p.A196A GGCCAGCGCCCCG 50 3 0.06 51 0 0 3 0 0.00 SLIT2 9353 mdanderson.org 37 4 20570610 20570610 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_004787 exon29 c.G3071T p.C1024F GCCTTTGCCCACC 46 3 0.07 73 0 0 1 0 0.00 CCDC149 91050 broad.mit.edu 37 4 24875311 24875311 + Missense_Mutation SNP T T C novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . CCDC149 NM_173463 exon4 c.A256G p.R86G GTTTCCTTTTTTC 79 4 0.05 92 0 0 41 4 0 0.00 TRIM61 391712 broad.mit.edu 37 4 165890992 165890992 + Missense_Mutation SNP A A G novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . TRIM61 NM_001012414 exon3 c.T163C p.F55L GGCAAAAGGGGCA 672 6 0.01 907 1 0.0011025358 11 6 0 0.00 SAP30 8819 broad.mit.edu 37 4 174295154 174295154 + Missense_Mutation SNP C C A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . SAP30 NM_003864 exon3 c.C506A p.T169N TACCAACCAGACC 349 6 0.02 391 0 0 9 56 0 0.00 ANKHD1 54882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 139819758 139819758 + Silent SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_024668 exon4 c.G672A p.L224L TAAATTGCTAGAT 59 10 0.17 98 0 0 38 7 0.18 PCDHB13 0 broad.mit.edu 37 5 140594283 140594283 + Silent SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . PCDHB13 NM_018933 exon1 c.G588A p.V196V GCTGGTGCTGGAC 308 11 0.04 409 0 0 142 1 0 0.00 HK3 3101 mdanderson.org 37 5 176308175 176308175 + Missense_Mutation SNP G G T rs200044768 alternate_allele TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 HK3_ENST00000292432,NS,carcinoma,+1,3 HK3_ENST00000292432 NM_002115 exon19 c.C2671A p.R891S CACAGCGAGGGGC 43 3 0.07 69 0 0 1 3 133 0 0.00 BTN2A3P 54718 hgsc.bcm.edu;broad.mit.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 BTN2A3,NS,carcinoma,0,9 BTN2A3 . . . . ATGGAACCAGCTG 108 5 0.05 121 1 0.0082644628 0 9 4 0 0.00 BTN2A3P 54718 hgsc.bcm.edu 37 6 26422469 26422469 + RNA SNP T T A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . . . . . AAAGGATCATCAA 60 5 0.08 58 0 0 3 0 0.00 EPB41L2 2037 mdanderson.org 37 6 131222222 131222222 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001252660 exon7 c.C1028A p.A343D AGTTCAGCCTGCA 116 5 0.04 126 0 0 59 0 0.00 HIVEP2 3097 mdanderson.org 37 6 143092507 143092507 + Silent SNP C C T rs372386907 TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_006734 exon5 c.G3369A p.P1123P AGCAGGCGGGCCA 43 3 0.07 34 0 0 2 0 0.00 NPC1L1 29881 broad.mit.edu 37 7 44575925 44575925 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . NPC1L1 NM_001101648 exon4 c.C1784T p.A595V AAGAAGGCCTCCT 72 4 0.06 84 0 0 141 0 0 DTX2 113878 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 76112033 76112033 + Silent SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_001102596 exon2 c.C477T p.H159H CACCCACACGCAG 298 55 0.18 315 0 0 34 3 0.09 PEX1 5189 mdanderson.org 37 7 92138651 92138651 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_000466 exon9 c.C1662A p.S554R CAAAGAGCTCAGC 72 4 0.06 61 0 0 8 0 0.00 GRM8 2918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 126249528 126249528 + Missense_Mutation SNP A A G novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_000845 exon7 c.T1382C p.F461S TCATTAAAAGTGA 95 12 0.13 98 0 0 0 0 KIAA1549 57670 bcgsc.ca;mdanderson.org 37 7 138593755 138593755 + Silent SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . KIAA1549 NM_020910 exon5 c.G3258A p.T1086T GTTATACGTTCCC 90 5 0.06 103 0 0 314 7 0 0.00 HTR5A 3361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 154876031 154876031 + Missense_Mutation SNP T T C novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_024012 exon2 c.T908C p.L303P TCTTTCTCACCGA 157 27 0.17 207 0 0 0 0 CSMD1 64478 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 2944635 2944635 + Silent SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . CSMD1 NM_033225 exon49 c.C7458T p.L2486L TGGCGTGAGGGAG 87 5 0.06 104 0 0 1469 0 0 CYP7A1 1581 broad.mit.edu 37 8 59409377 59409377 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . CYP7A1 NM_000780 exon3 c.C694T p.H232Y CATTGTGCGCAGT 143 4 0.03 157 0 0 76 0 0 . 347265 bcgsc.ca;mdanderson.org 37 9 102068358 102068358 + Missense_Mutation SNP A A G novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . . . . . AGACTGAGATCTC 54 6 0.11 65 0 0 4 0 0.00 PRRC2B 84726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 134343013 134343013 + Missense_Mutation SNP C C A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_013318 exon12 c.C1784A p.S595Y CAGTGTCCCCAGC 63 10 0.16 75 0 0 27 1 0.04 SNAPC4 6621 mdanderson.org 37 9 139272498 139272498 + Missense_Mutation SNP G G T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_003086 exon21 c.C3781A p.Q1261K CAGGCTGGGGTAG 38 3 0.08 53 0 0 17 0 0.00 PORCN 64840 hgsc.bcm.edu 37 X 48374126 48374126 + Missense_Mutation SNP G G T rs373433770 alternate_allele TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_203475 exon10 c.G968T p.R323L CTCTCCGCCTGGG 140 6 0.04 143 0 0 21 0 0.00 POF1B 79983 mdanderson.org 37 X 84634406 84634406 + Silent SNP C C T novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . NM_024921 exon2 c.G54A p.Q18Q TGGGAGCTGCTGG 53 3 0.06 63 0 0 1 0 0.00 . 352905 bcgsc.ca 37 Y 59001500 59001500 + RNA SNP C C A rs141869091 TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . . . . . TTCCTGCGTCCAT 25 4 0.16 35 0 0 0 0 BAHCC1 57597 mdanderson.org 37 17 79414838 79414838 + Missense_Mutation SNP G G A novel TCGA-XE-AAOB-01A-11D-A435-10 TCGA-XE-AAOB-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ee51c341-2389-4d94-bcec-3032c60427d6 9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594 . . . . . . GACCTGGCAATCC 50 4 0.08 53 0 0 5 0 0.00