Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CROCC 9696 mdanderson.org 37 1 17294828 17294828 + Missense_Mutation SNP A A G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_014675 exon31 c.A4991G p.E1664G AGGGGGAGCTGCA 69 4 0.06 84 0 0 38 0 0.00 PFKP 5214 bcgsc.ca 37 10 3161041 3161041 + Silent SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . PFKP NM_002627 exon15 c.C1510T p.L504L GCGCTGCTGATCA 73 5 0.07 84 0 0 182 194 0 0.00 MUC6 4588 bcgsc.ca 37 11 1016822 1016822 + Silent SNP A A C novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . MUC6 NM_005961 exon31 c.T5979G p.T1993T ATAGGTAGTGGTG 375 16 0.04 523 13 0.0248565966 408 0 0 OR56B1 387748 mdanderson.org 37 11 5758268 5758268 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001005180 exon1 c.G522T p.Q174H AGCACAGCGTGAT 49 3 0.06 80 0 0 0 0 PAX6 5080 broad.mit.edu 37 11 31816308 31816308 + Silent SNP T T C novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . PAX6 NM_001604 exon9 c.A594G p.G198G ATTCTCTCCCCCT 102 5 0.05 133 1 0.007518797 75 0 0 APLNR 187 mdanderson.org 37 11 57004401 57004401 + Silent SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_005161 exon1 c.C78A p.S26S CCCCGAGGATTTC 48 3 0.06 81 0 0 22 0 0.00 SF1 7536 bcgsc.ca 37 11 64533334 64533334 + Missense_Mutation SNP A A T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . SF1 NM_004630 exon13 c.T1876A p.F626I TCCCGAAGGGCGG 34 4 0.12 74 0 0 124 201 0 0.00 INTS4 92105 broad.mit.edu 37 11 77635932 77635932 + Missense_Mutation SNP A A C rs148749715 TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . INTS4 NM_033547 exon12 c.T1378G p.S460A CTCTGGATGAATC 232 5 0.02 249 0 0 89 32 0 0.00 ANGPTL5 253935 mdanderson.org 37 11 101775579 101775579 + Silent SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_178127 exon5 c.G405A p.L135L AGGATCCAGCTGT 30 3 0.10 24 0 0 0 0 TIRAP 114609 mdanderson.org 37 11 126162383 126162383 + Nonsense_Mutation SNP C C T rs202146623 bycluster TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_148910 exon5 c.C79T p.Q27X TTCAGGCAGACCC 42 3 0.07 60 0 0 0.001 3 0 0.00 GLB1L2 89944 mdanderson.org 37 11 134226237 134226237 + Nonsense_Mutation SNP G G T rs146193618 alternate_allele TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_138342 exon6 c.G601T p.E201X GAGAATGAATATG 33 3 0.09 46 0 0 1 0 0.00 PCBP2 5094 broad.mit.edu;ucsc.edu 37 12 53865577 53865577 + Nonsense_Mutation SNP T T G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . PCBP2 NM_005016 exon14 c.T1050G p.Y350X TCAATATCTAATC 114 4 0.04 148 0 0 38 2328 444 0.19 rescued with RNA-seq DNAH10 196385 mdanderson.org 37 12 124256228 124256228 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_207437 exon3 c.G196T p.E66X ATTTCAGAAAAAC 42 3 0.07 63 0 0 0 0 EP400 57634 hgsc.bcm.edu;mdanderson.org 37 12 132547147 132547147 + Silent SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_015409 exon47 c.G8235A p.Q2745Q GCAGCAGCAGCAA 149 10 0.07 150 0 0 53 0 0.00 ABHD4 0 bcgsc.ca 37 14 23067200 23067200 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . ABHD4 . . . . GACCTGGCAAGGC 60 4 0.07 37 0 0 30 6 0 0.00 TMEM30B 161291 mdanderson.org 37 14 61747673 61747673 + Missense_Mutation SNP A A G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001017970 exon1 c.T193C p.Y65H AGTCGTACTCCAG 13 2 0.15 10 0 0 0 0 . 283685 bcgsc.ca 37 15 23685625 23685625 + Missense_Mutation SNP T T C rs372736971 TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . . . . . ACATCTTCTCCTC 33 4 0.12 37 1 0.027027027 0 0 DPP8 54878 mdanderson.org 37 15 65744370 65744370 + Missense_Mutation SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_197960 exon19 c.G2390A p.G797D GGGTGACCCATAT 47 3 0.06 71 0 0 34 0 0.00 CD276 80381 mdanderson.org 37 15 74000783 74000783 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001024736 exon7 c.G1473T p.K491N GAGAAAGATCAAA 42 3 0.07 81 0 0 138 0 0.00 ABCA3 21 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2358479 2358479 + Silent SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001089 exon11 c.C1257T p.A419A GAGCTGGGCTCCC 61 13 0.21 65 0 0 2 0 0.00 ZNF785 146540 mdanderson.org 37 16 30594392 30594392 + Missense_Mutation SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_152458 exon3 c.G707A p.R236H CGGAAGCGGCGCC 42 3 0.07 44 0 0 7 0 0.00 ZNF668 79759 mdanderson.org 37 16 31073545 31073545 + Missense_Mutation SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001172669 exon4 c.G773A p.R258H GATGAGCGGGAGA 52 3 0.06 37 0 0 51 0 0.00 HSF4 3299 mdanderson.org 37 16 67198821 67198821 + Missense_Mutation SNP T T C novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001538 exon3 c.T107C p.L36P ACCACCTGATCCG 33 3 0.09 26 0 0 2 0 0.00 FAM65A 79567 mdanderson.org 37 16 67578273 67578273 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001193523 exon15 c.G2732T p.G911V GCACGGGGTGTCC 28 3 0.11 40 0 0 43 0 0.00 ANKRD11 29123 mdanderson.org 37 16 89346815 89346815 + Silent SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001256182 exon10 c.C6135A p.P2045P GGCGGCGGGGACG 21 2 0.10 29 0 0 55 1 0.02 SPNS2 124976 mdanderson.org 37 17 4439658 4439658 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001124758 exon11 c.G1544T p.G515V TCCTGGGCGGCAT 35 3 0.09 42 0 0 23 0 0.00 RARA 0 broad.mit.edu 37 17 38512394 38512394 + Silent SNP T T G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . RARA NM_000964 exon9 c.T1305G p.G435G CGGGGGTGGCCTG 87 11 0.13 86 0 0 52 21 0 0.00 ITGA3 3675 mdanderson.org 37 17 48157689 48157689 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_005501 exon22 c.G2770T p.V924F CCCGTTGTCACCA 31 3 0.10 39 0 0 30 0 0.00 C17orf80 55028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 71232215 71232215 + Silent SNP A A G rs372656983 bycluster TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001100621 exon3 c.A594G p.Q198Q TGTACAAACTACC 219 33 0.15 164 0 0 77 27 0.35 SRP68 6730 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 74046599 74046599 + Missense_Mutation SNP G G T rs148814451 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad SRP68,NS,carcinoma,-1,1 SRP68 NM_014230 exon9 c.C987A p.S329R TTCTTCGCTTTCA 63 5 0.08 78 0 0 -1 1 168 0 0.00 TNRC6C 57690 broad.mit.edu;mdanderson.org 37 17 76047438 76047438 + Silent SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . TNRC6C NM_018996 exon4 c.C2295T p.T765T CACCACCACTACC 47 3 0.06 37 0 0 173 20 0 0.00 NDC80 10403 mdanderson.org 37 18 2608749 2608749 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_006101 exon15 c.G1608T p.E536D CTTGGAGAAACAC 50 3 0.06 56 0 0 109 0 0.00 ZNF24 7572 mdanderson.org 37 18 32920572 32920572 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_006965 exon2 c.C43A p.P15T GAGTTGGGATGAT 39 3 0.08 44 0 0 22 0 0.00 PIGN 23556 mdanderson.org 37 18 59781853 59781853 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_176787 exon15 c.C1192A p.Q398K TGAACTGTTTGGA 49 3 0.06 51 0 0 20 0 0.00 NOTCH3 4854 mdanderson.org 37 19 15296450 15296450 + Silent SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_000435 exon13 c.C1992T p.S664S GCATGGGCTGGAA 31 3 0.10 33 0 0 26 0 0.00 SPRED3 399473 mdanderson.org 37 19 38885395 38885395 + Missense_Mutation SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001042522 exon4 c.C536T p.T179M CGACCACGCCCCC 24 3 0.13 31 0 0 0 0 GRIK5 2901 mdanderson.org 37 19 42507589 42507589 + Missense_Mutation SNP G G T rs141544447 alternate_allele TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_002088 exon18 c.C2409A p.N803K ACCAATGTTCTCC 51 3 0.06 79 0 0 2 0 0.00 LIG1 3978 mdanderson.org 37 19 48636349 48636349 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_000234 exon18 c.C1615A p.P539T TCAGGGGAATCCC 48 3 0.06 73 0 0 143 0 0.00 USP29 0 broad.mit.edu 37 19 57641367 57641367 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad USP29,NS,carcinoma,0,1 USP29 NM_020903 exon4 c.G1324T p.G442C GCTTGTGGTCATG 87 3 0.03 107 0 0 186 1 1 0 0.00 CPSF3 51692 broad.mit.edu 37 2 9568893 9568893 + Splice_Site SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . CPSF3 NM_016207 exon2 c.51-1G>T . TTTACAGTGGAGC 228 5 0.02 274 0 0 63 0 0 ASXL2 55252 mdanderson.org 37 2 25994311 25994311 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_018263 exon5 c.C502A p.Q168K TTACCTGCTTTAG 130 5 0.04 126 0 0 8 0 0.00 THADA 63892 broad.mit.edu 37 2 43793648 43793648 + Missense_Mutation SNP A A G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . THADA . . . . ATGAAAAGGGAGA 197 4 0.02 188 0 0 131 0 0 CCT4 10575 mdanderson.org 37 2 62110604 62110604 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_006430 exon3 c.C260A p.A87E CTGGCTGCTGGAT 29 2 0.07 34 0 0 524 0 0.00 LOC150776 0 broad.mit.edu 37 2 132277686 132277686 + RNA SNP C C T rs9287520 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . . . . . AGATGGCGGCTCT 53 4 0.08 87 0 0 142 0 0.00 FAM182B 728882 mdanderson.org 37 20 25755549 25755549 + RNA SNP C C A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad FAM182B,colon,carcinoma,0,1 FAM182B . . . . CTGCAGCCTTCCT 44 3 0.07 59 0 0 0 1 3 0 0.00 C20orf203 284805 broad.mit.edu 37 20 31238232 31238232 + RNA SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . . . . . GGGCTCGGCTAAT 81 3 0.04 85 0 0 0 0 OGFR 11054 mdanderson.org 37 20 61444930 61444930 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_007346 exon7 c.G1963T p.A655S GAGCCAGCCAAGG 43 3 0.07 70 0 0 229 0 0.00 OLIG2 10215 mdanderson.org 37 21 34399701 34399701 + Silent SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_005806 exon2 c.C531T p.Y177Y GATCTACGGGGGC 39 3 0.08 35 0 0 0 0 KCNJ6 3763 bcgsc.ca 37 21 39087331 39087331 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . KCNJ6 NM_002240 exon3 c.C129A p.H43Q GCTGATGTGTCTT 128 6 0.05 196 0 0 58 0 0 . 0 bcgsc.ca 37 22 47859107 47859107 + Silent SNP T T C novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . . . . . TGCTCCTTTTTTG 72 4 0.06 82 0 0 0 0 QARS 5859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49139869 49139869 + Silent SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_005051 exon6 c.C553T p.L185L TCTCCAGATCAGC 91 10 0.11 144 0 0 350 115 0.33 IFRD2 7866 mdanderson.org 37 3 50329785 50329785 + Missense_Mutation SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_006764 exon1 c.G113A p.R38H CCGGTGCGCTGCG 22 2 0.09 23 0 0 13 0 0.00 PCGF3 10336 mdanderson.org 37 4 727493 727493 + Silent SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_006315 exon4 c.G24T p.L8L CAAGCTGTGGGAC 39 3 0.08 40 0 0 62 0 0.00 FGFRL1 53834 mdanderson.org 37 4 1016154 1016154 + Silent SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001004356 exon3 c.G243A p.P81P GCTGCCGCAGGGG 34 3 0.09 39 0 0 20 0 0.00 CLCN3 0 broad.mit.edu 37 4 170618538 170618538 + Missense_Mutation SNP T T C novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . CLCN3 NM_001829 exon9 c.T1216C p.F406L GGAGCCTTTTTCA 170 4 0.02 203 2 0.0098522167 85 9 0 0.00 CTNND2 1501 mdanderson.org 37 5 11385032 11385032 + Missense_Mutation SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001332 exon7 c.G922A p.A308T ACTTGGCCAGGCG 27 3 0.11 15 0 0 0 0 FEM1C 56929 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 5 114860823 114860823 + Missense_Mutation SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad FEM1C,NS,carcinoma,0,1 FEM1C NM_020177 exon3 c.G1036A p.A346T AGACAGCGCCTCT 54 4 0.07 72 0 0 0 1 8 0 0.00 EBF1 1879 mdanderson.org 37 5 158135162 158135162 + Silent SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_024007 exon15 c.C1569A p.T523T GGCCATGGTGGGG 48 3 0.06 66 0 0 3 0 0.00 TXNDC5 81567 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 7883446 7883446 + Silent SNP C C T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_030810 exon10 c.G1230A p.E410E ACTGTGCTCACTG 98 5 0.05 81 0 0 639 14 0.02 ID4 3400 mdanderson.org 37 6 19838202 19838202 + Missense_Mutation SNP A A G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001546 exon1 c.A217G p.S73G TGCTATAGCCGCC 61 3 0.05 67 0 0 33 0 0.00 MDN1 23195 mdanderson.org 37 6 90529232 90529232 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_014611 exon1 c.C95A p.A32D TGCTTGGCCAAGA 56 3 0.05 73 0 0 1 0 0.00 SYNE1 23345 broad.mit.edu;mdanderson.org 37 6 152469314 152469314 + Missense_Mutation SNP A A G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . SYNE1 NM_182961 exon137 c.T24842C p.I8281T AGGGGGATGGAGT 85 4 0.05 94 0 0 3227 23 0 0.00 SLC22A1 6580 mdanderson.org 37 6 160564645 160564645 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_153187 exon8 c.G1349T p.C450F TGATCTGCCTGGT 45 3 0.07 75 0 0 2 0 0.00 ZNF425 155054 broad.mit.edu;mdanderson.org 37 7 148801463 148801463 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . ZNF425 NM_001001661 exon4 c.C1500A p.C500X CTCGCCGCAGGGA 34 3 0.09 47 0 0 99 1 0 0.00 AZIN1 51582 ucsc.edu 37 8 103841637 103841637 + Silent SNP T T C novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . AZIN1 NM_015878 exon12 c.A1098G p.E366E ACAGCTTTCCACA 135 1 0.01 165 0 0 26 407 63 0.15 PSCA 8000 mdanderson.org 37 8 143763491 143763491 + Missense_Mutation SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_005672 exon3 c.G286A p.A96T GCTGCTGCCATCC 22 3 0.14 32 0 0 0 0 PLEC 5339 mdanderson.org 37 8 145007483 145007483 + Missense_Mutation SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_201380 exon13 c.C1711T p.R571W CCGCCCGCTGTGG 35 3 0.09 42 0 0 27 0 0.00 NOTCH1 4851 mdanderson.org 37 9 139407986 139407986 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_017617 exon14 c.C2211A p.Y737X GCACTTGTACCTG 38 3 0.08 51 0 0 15 0 0.00 ABCA2 20 mdanderson.org 37 9 139907513 139907513 + Missense_Mutation SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_212533 exon30 c.C4898T p.A1633V GGGGACGCTGGCG 20 2 0.10 23 0 0 8 0 0.00 CXorf38 159013 mdanderson.org 37 X 40489933 40489933 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_144970 exon6 c.C894A p.S298R ACAGAGGCTGTCT 48 3 0.06 63 0 0 44 0 0.00 . 0 bcgsc.ca 37 X 43267493 43267494 + RNA DNP TG TG CT novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . . . . . CACAGCTGGGTGG 17 4 0.24 18 0 0 0 0 OGT 8473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 70793562 70793562 + Missense_Mutation SNP A A G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_181672 exon22 c.A3059G p.Y1020C GGCTCTATCTACA 69 13 0.19 85 0 0 351 100 0.28 GPRASP2 114928 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 X 101971349 101971349 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_138437 exon4 c.G1552T p.E518X ATTCCCGAAGAGG 88 4 0.05 105 0 0 16 0 0.00 SLC25A5 292 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118602491 118602491 + Missense_Mutation SNP G G A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001152 exon1 c.G13A p.A5T GATGCCGCTGTGT 168 26 0.15 176 0 0 559 220 0.39 GLUD2 2747 mdanderson.org 37 X 120182071 120182071 + Missense_Mutation SNP C C A novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_012084 exon1 c.C533A p.P178Q ATGTGCCGTTTGG 55 3 0.05 46 0 0 89 0 0.00 THOC2 57187 mdanderson.org 37 X 122747911 122747911 + Silent SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_001081550 exon34 c.C4441A p.R1481R TTTTCCGCTCTTT 17 2 0.12 25 0 0 151 0 0.00 XPNPEP2 7512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 128886308 128886308 + Missense_Mutation SNP A A G novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_003399 exon10 c.A1004G p.E335G TCTATGAAATGAT 113 21 0.19 112 0 0 0 0 NLGN4Y 22829 mdanderson.org 37 Y 16953087 16953087 + Missense_Mutation SNP G G T novel TCGA-XE-AAOD-01A-11D-A435-10 TCGA-XE-AAOD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2a0bdd28-8993-44f4-a117-65ff51ff02c6 dc69fa13-f07c-4903-a807-b0a0e9d277ad . . NM_014893 exon6 c.G2396T p.S799I CCTTCAGTGGAGG 46 3 0.07 106 0 0 1 0 0.00