Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SSBP3 23648 broad.mit.edu 37 1 54871665 54871665 + Missense_Mutation SNP T T C novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . SSBP3 NM_001009955 exon1 c.A17G p.K6R GAGCCTTTGCCTT 55 5 0.09 96 1 0.0104166667 65 83 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145116147 145116148 + RNA INS - - A rs113058116 bycluster TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . . . . . GATTGTTATTTCG 11 4 0.36 5 0 0 131 0 0.00 NBPF10 100132406 hgsc.bcm.edu 37 1 145293535 145293535 + Missense_Mutation SNP C C G rs55936365 TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a NBPF10,NS,carcinoma,0,2 NBPF10 NM_001039703 exon1 c.C130G p.L44V TGTTTTCTAACTC 65 4 0.06 50 2 0.04 0 2 5 0 0.00 TDRKH 11022 broad.mit.edu 37 1 151747281 151747281 + Splice_Site SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . TDRKH NM_001083965 exon12 c.C1538A p.A513D TCTGTGGCCTGAG 95 4 0.04 80 0 0 45 52 0 0.00 PROX1 5629 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 214170542 214170542 + Nonsense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001270616 exon2 c.C664T p.Q222X AGTTTCCAGCAGC 80 6 0.08 61 0 0 2 0 0.00 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 215847769 215847769 + Missense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_206933 exon63 c.G13484A p.R4495H AAATCACGATAGC 112 22 0.20 112 0 0 0 0 SIRT1 23411 mdanderson.org 37 10 69676305 69676305 + Silent SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_012238 exon9 c.G2199T p.V733V ATCTGTGAAACAG 33 3 0.09 44 0 0 149 0 0.00 DNMBP 23268 mdanderson.org 37 10 101643788 101643788 + Missense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_015221 exon15 c.G3977A p.R1326H AGCCAGCGGTTCT 48 3 0.06 73 0 0 22 0 0.00 PDZD8 118987 hgsc.bcm.edu;mdanderson.org 37 10 119044191 119044191 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_173791 exon5 c.C2053A p.L685I GATAAAGAATTTC 111 5 0.05 125 0 0 37 0 0.00 DCHS1 8642 mdanderson.org 37 11 6653321 6653321 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_003737 exon6 c.C3422A p.T1141N CTGTAGGTCAGAC 21 2 0.10 17 0 0 15 0 0.00 OR1S2 219958 broad.mit.edu 37 11 57970760 57970760 + Missense_Mutation SNP C C T rs200054918 TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a OR1S2,NS,carcinoma,0,3 OR1S2 NM_001004459 exon1 c.G894A p.M298I GGGGTTCATCATG 79 5 0.06 83 1 0.0120481928 119 3 0 0 INTS5 80789 mdanderson.org 37 11 62416258 62416258 + Missense_Mutation SNP G G A novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_030628 exon2 c.C1294T p.R432C CCTCACGCACGGT 88 4 0.05 121 0 0 48 1 0.02 MYO7A 4647 mdanderson.org 37 11 76913417 76913417 + Nonsense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_000260 exon37 c.G5116T p.E1706X GAGCCCGAGGTGC 46 3 0.07 45 0 0 8 0 0.00 WBP11 51729 broad.mit.edu 37 12 14940229 14940229 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . WBP11 NM_016312 exon12 c.C1696A p.P566T TCTGTGGCTTGGC 223 5 0.02 63 0 0 66 1950 1 0.00 CAPRIN2 65981 broad.mit.edu 37 12 30863206 30863206 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . CAPRIN2 NM_001002259 exon18 c.C3014A p.T1005N TTAGAGGTTCTGG 331 6 0.02 125 0 0 109 278 0 0.00 LOC100240735 0 broad.mit.edu 37 12 54472994 54472996 + RNA DEL TTC TTC - novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 TTC TTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . . . . . TGTTCTTTCTTCT 6 3 0.50 6 0 0 3 0 0.00 RPGRIP1 57096 mdanderson.org 37 14 21769151 21769151 + Missense_Mutation SNP C C T rs371371555 TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_020366 exon3 c.C245T p.T82I GGTTGACCGCTGC 49 3 0.06 62 0 0 0 0 SLC7A7 9056 mdanderson.org 37 14 23244708 23244708 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001126105 exon8 c.C1040A p.A347D CAGATGGCATCAG 35 3 0.09 42 0 0 73 0 0.00 VPS13C 54832 mdanderson.org 37 15 62204118 62204118 + Nonsense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_020821 exon63 c.C8636A p.S2879X TCTAATGATGACT 75 4 0.05 85 0 0 6 0 0.00 NUBP2 10101 mdanderson.org 37 16 1838172 1838172 + Nonsense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_012225 exon6 c.G634T p.E212X GGCGGAGAGGAGC 32 3 0.09 35 0 0 214 0 0.00 TK2 7084 broad.mit.edu 37 16 66565284 66565284 + Splice_Site SNP T T A novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . TK2 NM_004614 exon5 c.A374T p.Q125L CCTACCTGAGGAC 65 3 0.05 70 0 0 17 20 0 0.00 FUK 197258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 70502854 70502854 + Missense_Mutation SNP G G A rs200140905 TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_145059 exon9 c.G766A p.G256R GACTCCGGAGCCC 77 18 0.23 67 0 0 0.001 34 14 0.41 IL34 146433 broad.mit.edu 37 16 70693984 70693984 + Missense_Mutation SNP C C T rs201277640 bycluster;by1000genomes TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a IL34,bladder,carcinoma,0,3 IL34 NM_152456 exon7 c.C623T p.A208V AGTATGCGGCCAC 234 6 0.03 256 0 0 26 3 104 0 0.00 HSDL1 83693 mdanderson.org 37 16 84163181 84163181 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_031463 exon5 c.C866A p.T289N CCTGTGGTCCTTT 44 3 0.07 55 0 0 47 0 0.00 C1QBP 708 mdanderson.org 37 17 5341589 5341589 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001212 exon2 c.C237A p.D79E AGCTTTGTCTCCT 52 3 0.06 63 0 0 515 0 0.00 KIF18B 146909 broad.mit.edu 37 17 43009468 43009468 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . KIF18B NM_001264573 exon10 c.C1381A p.Q461K GCTCCTGGTCTGA 102 4 0.04 100 0 0 63 67 0 0.00 MRPL45P2 653479 hgsc.bcm.edu 37 17 45560578 45560578 + RNA SNP T T C rs199837409 bycluster TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . . . . . TTTTTTTCTTTTT 140 6 0.04 131 0 0 0 0 CASKIN2 57513 mdanderson.org 37 17 73498038 73498038 + Silent SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_020753 exon18 c.C3117A p.P1039P GGGCTCGGGCTGG 55 3 0.05 49 0 0 60 0 0.00 TBCD 6904 mdanderson.org 37 17 80739475 80739475 + Missense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_005993 exon7 c.C649T p.R217C ATCACACGTCCTG 41 3 0.07 37 0 0 422 0 0.00 ANKRD30B 374860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 14748512 14748512 + Missense_Mutation SNP G G C rs372583134 alternate_allele TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001145029 exon1 c.G94C p.G32R GACTACGGGACCA 74 16 0.22 70 0 0 0 0 GREB1L 80000 mdanderson.org 37 18 19080093 19080093 + Silent SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001142966 exon22 c.G3795T p.V1265V CTGGGTGAGCTCC 50 3 0.06 59 0 0 2 0 0.00 HNRNPM 4670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 8539106 8539106 + Silent SNP G G C rs375739833 alternate_allele TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a HNRNPM,NS,malignant_melanoma,+2,1 HNRNPM NM_005968 exon12 c.G1098C p.G366G ATCTGGGATGAAC 141 19 0.13 132 0 0 2 1 1490 338 0.23 ZNF224 7767 mdanderson.org 37 19 44611473 44611473 + Missense_Mutation SNP T T A novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_013398 exon6 c.T1160A p.L387H CGTGTCTTTTGAA 58 4 0.07 47 0 0 37 0 0.00 MYPOP 339344 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 46394069 46394069 + Missense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001012643 exon3 c.G1012A p.V338M CGGACACGGGCTC 30 5 0.17 26 0 0 1 1 1.00 KCNC3 3748 mdanderson.org 37 19 50831872 50831872 + Silent SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_004977 exon1 c.G468A p.L156L GCAGTGCAGCTTG 44 3 0.07 60 0 0 2 0 0.00 ATRAID 51374 broad.mit.edu 37 2 27438402 27438402 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_080592 exon4 c.G519T p.Q173H TACTCAGCTCCAG 177 5 0.03 167 0 0 518 1 0.00 RGPD4 285190 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 108496563 108496563 + Missense_Mutation SNP G G C novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_182588 exon21 c.G5064C p.K1688N AATTAAGGTGAGA 795 36 0.05 751 0 0 0 0 STK35 140901 hgsc.bcm.edu 37 20 2083851 2083851 + Silent SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_080836 exon2 c.G732T p.A244A GCTGGCGCTGGCT 64 5 0.08 46 0 0 67 0 0.00 SIGLEC1 6614 mdanderson.org 37 20 3674127 3674127 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_023068 exon13 c.C3475A p.R1159S AGAGGCGGGGTGC 26 2 0.08 25 0 0 20 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29623214 29623214 + Missense_Mutation SNP C C T rs367590609 TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . FRG1B . . . . TGCACTCGACAAT 308 18 0.06 309 9 0.0291262136 181 208 2 0.01 ZNF341 84905 mdanderson.org 37 20 32378974 32378974 + Missense_Mutation SNP A A G novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_032819 exon15 c.A2195G p.K732R AGGACAAGGACCT 63 3 0.05 72 0 0 28 0 0.00 SEC22C 9117 mdanderson.org 37 3 42594863 42594863 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_032970 exon7 c.C789A p.N263K GTACATGTTGCCC 55 3 0.05 59 0 0 34 0 0.00 ATRIP 84126 mdanderson.org 37 3 48505443 48505443 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_130384 exon10 c.G1886T p.G629V CAGAAGGCTGCCT 36 3 0.08 39 0 0 40 0 0.00 ARIH2OS 646450 mdanderson.org 37 3 48955837 48955837 + Missense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001123040 exon1 c.G746A p.R249H ACTGCGCGGCGAA 46 3 0.07 51 0 0 4 0 0.00 CDHR4 389118 mdanderson.org 37 3 49829387 49829387 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001007540 exon16 c.C2144A p.A715D AGCTGGGCCAACC 50 3 0.06 50 0 0 0 0 C3orf72 401089 mdanderson.org 37 3 138666289 138666289 + Missense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001040061 exon1 c.C83T p.A28V TCCAAGCCTCCTC 43 4 0.09 55 0 0 0 0 RBP1 5947 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 139257745 139257745 + Missense_Mutation SNP C C G novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_002899 exon2 c.G316C p.V106L CCTGCACGATCTC 120 8 0.07 134 0 0 172 15 0.09 PCDH7 5099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 30725116 30725116 + Missense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_032457 exon1 c.C2072T p.T691M ATGACACGGGGAC 57 15 0.26 80 0 0 1 0 0.00 BMP2K 55589 broad.mit.edu 37 4 79792085 79792085 + Missense_Mutation SNP G G C novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a BMP2K_ENST00000502871,NS,carcinoma,0,7 BMP2K NM_017593 exon11 c.G1380C p.Q460H TCACCAGCAGCAG 76 3 0.04 54 0 0 169 7 48 0 0.00 NKD2 85409 broad.mit.edu 37 5 1038447 1038449 + In_Frame_Del DEL CAC CAC - rs75431263 alternate_allele TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 CAC CAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . NKD2 NM_033120 exon10 c.1315_1317del p.439_439del CACGAGCACCACC 6 2 0.33 8 0 0 39 8 0 0.00 FST 10468 mdanderson.org 37 5 52781043 52781043 + Missense_Mutation SNP C C A novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_006350 exon5 c.C938A p.S313Y AGCACTCCGGATC 31 3 0.10 45 0 0 1 0 0.00 TRIM23 373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 64906830 64906830 + Nonsense_Mutation SNP G G C novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a TRIM23,bladder,carcinoma,0,1 TRIM23 NM_033228 exon5 c.C686G p.S229X AAAATTGATGCTC 73 15 0.21 93 0 0 0 1 19 5 0.26 NBPF22P 0 broad.mit.edu 37 5 85586764 85586764 + RNA SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . . . . . TGTCTGCGACTAC 330 5 0.02 409 2 0.0048899756 0 0 SLC26A2 1836 mdanderson.org 37 5 149361140 149361140 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_000112 exon3 c.G1984T p.A662S GATACAGCAGGGA 40 3 0.08 54 0 0 5 0 0.00 LCP2 3937 mdanderson.org 37 5 169683547 169683547 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_005565 exon17 c.C1133A p.P378Q TATGGTGGCAGGG 51 3 0.06 67 0 0 102 1 0.01 MSH5 4439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31725947 31725947 + Silent SNP G G C novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_025259 exon13 c.G1071C p.V357V GACTGTGTACAGT 70 24 0.34 74 0 0 18 6 0.33 SOGA3 387104 mdanderson.org 37 6 127796804 127796804 + Silent SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_001012279 exon6 c.C2367A p.I789I GCAGCGGATGTTG 9 2 0.22 14 0 0 0 0 TBP 6908 hgsc.bcm.edu 37 6 170871004 170871004 + Silent SNP G G A novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_003194 exon3 c.G180A p.Q60Q GCAGCAGCAACAA 49 7 0.14 74 0 0 61 0 0.00 TRA2A 29896 broad.mit.edu 37 7 23545402 23545403 + Frame_Shift_Del DEL TC TC - novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 TC TC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . TRA2A NM_013293 exon7 c.800_801del p.267_267del TCTATATCGACTA 155 9 0.06 166 0 0 29 447 37 0.08 NOM1 64434 mdanderson.org 37 7 156756636 156756636 + Missense_Mutation SNP G G T rs369881632 alternate_allele TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_138400 exon7 c.G1949T p.R650M AGCAGAGGATGAA 56 3 0.05 59 0 0 68 0 0.00 GLI4 2738 mdanderson.org 37 8 144351632 144351632 + Silent SNP A A T rs6558341 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_138465 exon2 c.A66T p.P22P ATCACCAGGGACA 81 2 0.02 76 0 0 49 0 0.00 FAM205B 0 broad.mit.edu 37 9 34835480 34835480 + RNA SNP C C T rs75725332 byfrequency TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . FAM205B . . . . GGCCATCGGATGC 65 5 0.08 69 1 0.0144927536 10 0 0 VCP 7415 mdanderson.org 37 9 35059088 35059088 + Silent SNP T T C novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_007126 exon15 c.A2133G p.R711R CCTCTCTCGTTCT 53 3 0.06 60 0 0 1518 1 0.00 . 0 bcgsc.ca 37 9 76264707 76264707 + RNA SNP G G A novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . . . . . TTGATCGGAAACA 20 7 0.35 20 0 0 0 0 PHF2 5253 mdanderson.org 37 9 96407931 96407931 + Missense_Mutation SNP G G A novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_005392 exon4 c.G320A p.R107H TGGCCCGTGTGCC 33 3 0.09 38 0 0 20 0 0.00 RIBC1 158787 broad.mit.edu 37 X 53457699 53457699 + Missense_Mutation SNP G G T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . RIBC1 NM_001031745 exon7 c.G1019T p.G340V GTCTAGGATCCTT 76 3 0.04 57 0 0 20 6 0 0.00 . 84443 broad.mit.edu 37 X 106846480 106846480 + Silent SNP G G A novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . . . . . ACAACAGCAGCAG 142 6 0.04 122 1 0.0081967213 28 1 0.04 AFF2 2334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 147891442 147891442 + Missense_Mutation SNP C C T novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . NM_002025 exon4 c.C1084T p.R362W ATCTTGCGGGTGA 139 48 0.35 113 0 0 0 0 . 0 broad.mit.edu 37 X 155255062 155255062 + RNA SNP C C G novel TCGA-YU-A90P-01A-11D-A435-10 TCGA-YU-A90P-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74fe6dad-8904-4817-9bd1-c10506bcf478 9a3ac787-1752-4e74-bb5b-2d9ec803541a . . . . . . TTCCCCCCCAGAC 123 3 0.02 89 0 0 114 24 0.21 rescued with RNA-seq