Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ARHGEF16 27237 mdanderson.org 37 1 3397126 3397126 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_014448 exon15 c.G2105T p.R702L TGGAGCGTCTGCG 20 4 0.20 33 0 0 52 0 0.00 CASZ1 54897 mdanderson.org 37 1 10699273 10699273 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001079843 exon21 c.C5006A p.A1669E CCAGCTGCGGCGG 14 2 0.14 13 0 0 0 0 KIAA2013 90231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11982843 11982843 + Missense_Mutation SNP A A C novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_138346 exon2 c.T1737G p.H579Q CTCATCATGGGCC 237 72 0.30 195 0 0 374 120 0.32 SPEN 23013 hgsc.bcm.edu 37 1 16174549 16174549 + RNA SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . TCGCCGGCACGCC 100 13 0.13 104 0 0 15 2 0.13 NBPF1 55672 broad.mit.edu 37 1 16918653 16918653 + Splice_Site SNP C C T rs75226570 TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . AACTTACTGTTGT 50 4 0.08 55 0 0 1 0 0.00 DNM3 26052 hgsc.bcm.edu 37 1 171810829 171810829 + Silent SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a DNM3,caecum,carcinoma,+1,1 DNM3 NM_001136127 exon1 c.G33T p.P11P GATCCCGCTGGTG 47 2 0.04 63 0 0 1 1 2 0 0.00 FMN2 56776 mdanderson.org 37 1 240371244 240371244 + Silent SNP G G A rs200328010 TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a FMN2,right_upper_lobe,carcinoma,+1,1 FMN2 NM_020066 exon5 c.G3132A p.P1044P CCCTCCGCCCCCA 58 7 0.12 76 2 0.0263157895 0.002 1 1 1 0 0.00 KIF26B 55083 mdanderson.org 37 1 245851927 245851927 + Missense_Mutation SNP C C T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_018012 exon12 c.C5642T p.P1881L TCCCGCCGGCCAT 26 2 0.08 44 0 0 0 0 SKIDA1 387640 mdanderson.org 37 10 21806056 21806056 + Silent SNP G G A novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_207371 exon4 c.C696T p.A232A AGCAGCGGCGGCG 19 2 0.11 15 0 0 0 0 PDE3B 5140 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 14666502 14666502 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . PDE3B NM_000922 exon1 c.G881T p.R294M GGAGGAGGTCCAG 79 5 0.06 132 0 0 98 5 0 0.00 HNRNPKP3 0 broad.mit.edu 37 11 43283606 43283606 + RNA DEL A A - novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . AAATGTAAAAAAA 12 4 0.33 6 0 0 2 0 0.00 WNT11 7481 mdanderson.org 37 11 75905750 75905750 + Missense_Mutation SNP C C T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_004626 exon3 c.G458A p.R153H CCCCAGCGGTTCC 48 3 0.06 81 0 0 1 0 0.00 SYTL2 54843 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 85415906 85415906 + Silent SNP G G T rs374075595 alternate_allele TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_206927 exon9 c.C3283A p.R1095R CCTTCCGCTTCAG 115 5 0.04 160 0 0 7 0 0.00 DCP1B 196513 hgsc.bcm.edu 37 12 2062350 2062350 + Missense_Mutation SNP C C G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a DCP1B,bladder,carcinoma,0,13 DCP1B NM_152640 exon7 c.G756C p.Q252H CTGCTGCTGGTGG 55 3 0.05 26 0 0 0 13 128 1 0.01 DDX11 1663 mdanderson.org 37 12 31255198 31255198 + Missense_Mutation SNP G G A novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_030653 exon22 c.G2224A p.A742T AAGAGCGCACACC 375 16 0.04 203 0 0 307 9 0.03 KIF21A 55605 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 12 39735383 39735383 + Silent SNP C C T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a KIF21A,NS,carcinoma,0,2 KIF21A NM_001173464 exon14 c.G1845A p.E615E CTCCTCCTCTTCT 146 6 0.04 136 0 0 0 2 17 0 0.00 TESPA1 9840 broad.mit.edu 37 12 55354957 55354957 + Nonsense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001098815 exon10 c.C1562A p.S521X CTTCACGAGTCTT 125 4 0.03 143 0 0 8 0 0.00 SPRYD4 283377 broad.mit.edu 37 12 56862413 56862413 + Missense_Mutation SNP G G T rs142431089 alternate_allele TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . SPRYD4 NM_207344 exon1 c.G38T p.R13L TGTGCCGCTGGGG 114 4 0.04 74 0 0 13 28 0 0.00 LTB4R 1241 broad.mit.edu 37 14 24785074 24785074 + Missense_Mutation SNP T T C novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . LTB4R NM_181657 exon2 c.T217C p.F73L GCTCCCTTTTTCC 88 3 0.03 123 0 0 18 9 0 0.00 MESP2 145873 broad.mit.edu;mdanderson.org 37 15 90320173 90320173 + Silent SNP A A G rs113636330 TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . MESP2 NM_001039958 exon1 c.A585G p.G195G GCAAGGACAGGGG 37 4 0.11 34 0 0 20 0 0 UBN1 29855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 4903071 4903071 + Silent SNP C C G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001079514 exon2 c.C153G p.L51L CACCCTCTTTGAA 71 9 0.13 89 0 0 57 17 0.30 UBN1 29855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 4927071 4927071 + Missense_Mutation SNP C C G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001079514 exon16 c.C3224G p.T1075R TCGTCACAGGCCC 54 16 0.30 48 0 0 106 41 0.39 . 0 broad.mit.edu 37 16 90162530 90162530 + RNA SNP A A G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . CTGAATATCAGCA 46 4 0.09 61 1 0.0163934426 18 1 0.06 . 0 broad.mit.edu 37 17 17579770 17579771 + RNA DEL TG TG - rs72152573 alternate_allele TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . CAAGGCTGTGTGT 12 4 0.33 10 0 0 0 0 ABCA6 23460 broad.mit.edu 37 17 67124787 67124787 + Silent SNP A A G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . ABCA6 NM_080284 exon8 c.T1092C p.P364P GGCAAAAGGGCTA 146 4 0.03 176 0 0 210 0 0 ABCA7 10347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1061799 1061799 + Missense_Mutation SNP G G A novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_019112 exon41 c.G5482A p.V1828M CTGGGTGTGAATG 127 31 0.24 106 0 0 23 2 0.09 FAM108A1 81926 hgsc.bcm.edu 37 19 1881263 1881263 + Silent SNP G G A novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a FAM108A1,NS,carcinoma,0,2 FAM108A1 NM_031213 exon2 c.C303T p.C101C ATACATGCAGGAG 65 3 0.05 43 1 0.023255814 0 2 203 0 0.00 EVI5L 115704 mdanderson.org 37 19 7927017 7927017 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001159944 exon15 c.G1654T p.A552S CATCTGGCCCGCG 20 2 0.10 27 1 0.037037037 13 0 0.00 ZNF441 126068 mdanderson.org 37 19 11891239 11891239 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_152355 exon4 c.G600T p.L200F TAAGTTGTGTGGA 129 5 0.04 118 0 0 1 0 0.00 MED26 9441 bcgsc.ca 37 19 16687978 16687978 + Silent SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . MED26 NM_004831 exon3 c.C663A p.I221I GACGGGGATCTTG 84 5 0.06 87 0 0 25 40 0 0.00 USHBP1 83878 mdanderson.org 37 19 17366295 17366295 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_031941 exon10 c.C1591A p.L531M ACCGCAGCTGCTC 52 3 0.06 55 0 0 0 0 CATSPERG 57828 mdanderson.org 37 19 38827887 38827887 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_021185 exon2 c.G13T p.A5S GGCCCAGCCATGT 37 3 0.08 41 0 0 1 0 0.00 AXL 558 bcgsc.ca 37 19 41745121 41745121 + Missense_Mutation SNP A A G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . AXL NM_021913 exon9 c.A1187G p.D396G AGGGGGACGGGTC 72 4 0.06 70 2 0.0285714286 126 7 0 0.00 CCDC97 90324 mdanderson.org 37 19 41825732 41825732 + Silent SNP A A G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_052848 exon3 c.A756G p.E252E AGAGGAAGAGGAG 21 2 0.10 24 0 0 69 0 0.00 MYH14 79784 mdanderson.org 37 19 50781508 50781508 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001145809 exon30 c.G3994T p.A1332S GAGAGGGCACGAG 30 3 0.10 38 0 0 8 0 0.00 ARHGEF4 50649 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 131675018 131675018 + Missense_Mutation SNP G G A novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . ARHGEF4 . . . . GGCCAGGGTCCGC 138 32 0.23 149 1 0.0067114094 89 1 1 1.00 TRIP12 9320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 230663622 230663622 + Missense_Mutation SNP C C T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_004238 exon22 c.G3226A p.A1076T AGGCAGCCCTGGC 118 33 0.28 121 0 0 85 27 0.32 STK25 10494 mdanderson.org 37 2 242437664 242437664 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001271977 exon9 c.C1018A p.H340N AACTGTGCAGGGC 47 3 0.06 56 0 0 188 2 0.01 MICAL3 57553 bcgsc.ca 37 22 18358228 18358228 + Silent SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . MICAL3 NM_001136004 exon19 c.C2490A p.S830S GGAGTCGGAGGAG 43 4 0.09 73 0 0 53 0 0 EMID1 129080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 29627121 29627121 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_133455 exon6 c.G578T p.G193V ATGGAGGCCTCCA 209 37 0.18 207 0 0 8 3 0.38 SCN5A 6331 mdanderson.org 37 3 38592963 38592963 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_198056 exon28 c.C4900A p.L1634I GTCTGAGGATGCG 52 3 0.06 99 0 0 2 0 0.00 ZBTB47 92999 broad.mit.edu 37 3 42700893 42700893 + Missense_Mutation SNP A A G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . ZBTB47 NM_145166 exon2 c.A1046G p.E349G AGGAGGAGGGGGA 7 2 0.29 15 0 0 39 0 0 DRD3 1814 mdanderson.org 37 3 113858539 113858539 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_000796 exon5 c.C531A p.D177E AGTGGGGTCCCCT 44 4 0.09 69 0 0 0 0 YEATS2 55689 mdanderson.org 37 3 183504021 183504021 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_018023 exon20 c.G2845T p.A949S AGAGTAGCAGGAG 41 3 0.07 56 0 0 74 0 0.00 VWA5B2 90113 mdanderson.org 37 3 183954037 183954037 + Missense_Mutation SNP G G A novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_138345 exon8 c.G1199A p.R400Q AGAGCCGGCCTTG 36 3 0.08 81 0 0 3 0 0.00 CPZ 8532 mdanderson.org 37 4 8594640 8594640 + Missense_Mutation SNP A A C rs76775183 bycluster TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_003652 exon1 c.A80C p.N27T AGCGGAACCCCGC 14 5 0.36 17 7 0.4117647059 2 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599340 55599340 + Missense_Mutation SNP T T A rs121913514 TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a KIT,NS,malignant_melanoma,+2,48 KIT NM_000222 exon17 c.T2466A p.N822K TTCTAATTATGTG 81 39 0.48 94 0 0 2 48 259 169 0.65 CDH9 1007 mdanderson.org 37 5 26890658 26890658 + Silent SNP C C T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a CDH9,NS,malignant_melanoma,-2,3 CDH9 NM_016279 exon8 c.G1269A p.R423R AGTATGCCGATCA 47 3 0.06 72 0 0 -2 3 0 0 BLOC1S5-TXNDC5 100526836 hgsc.bcm.edu 37 6 7899765 7899765 + RNA SNP A A G rs57491386 TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . AGGGAGAGAGGGA 60 11 0.18 81 0 0 0 0 BTN2A3P 0 broad.mit.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a BTN2A3,NS,carcinoma,0,9 . . . . . ATGGAACCAGCTG 82 4 0.05 89 1 0.0112359551 9 1 0 0.00 FRS3 10817 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 41738715 41738715 + Missense_Mutation SNP G G A novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_006653 exon7 c.C1121T p.T374I GTGCTGGTGGGCT 61 6 0.10 62 0 0 15 4 0.27 RUNX2 860 mdanderson.org 37 6 45390482 45390482 + Missense_Mutation SNP C C G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a RUNX2_ENST00000352853,NS,carcinoma,0,2 RUNX2_ENST00000352853 NM_001024630 exon3 c.C211G p.Q71E CAGCAGCAGGAGG 22 2 0.09 31 0 0 0 2 0 0 . 0 broad.mit.edu 37 7 38284884 38284885 + RNA INS - - GG rs200076851 by1000genomes TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . TTGTCAAGGTGTG 8 5 0.63 11 0 0 0 0 CCT6P1 0 broad.mit.edu 37 7 65226641 65226641 + RNA SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . TCTTGCGCAGAAT 155 4 0.03 121 0 0 15 0 0.00 GNAT3 346562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 80141182 80141182 + Missense_Mutation SNP T T C novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001102386 exon1 c.A61G p.K21E GCTTTTTCTCCAG 82 12 0.15 97 0 0 0 0 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 82389980 82389980 + Missense_Mutation SNP A A G novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_033026 exon24 c.T15263C p.L5088P GGACTTAGACTGA 398 68 0.17 468 0 0 0 0 WASL 8976 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 123388725 123388725 + Missense_Mutation SNP G G A novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_003941 exon1 c.C64T p.L22F GGGTGAGCAACAG 38 11 0.29 38 0 0 95 33 0.35 ABCB8 11194 broad.mit.edu 37 7 150725641 150725641 + Missense_Mutation SNP C C T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . ABCB8 NM_007188 exon1 c.C39T p.G13G GGGTGGCCCATTC 66 22 0.33 55 2 0.0363636364 65 63 17 0.27 ARHGEF10 9639 mdanderson.org 37 8 1853876 1853876 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_014629 exon17 c.G1961T p.S654I CCGTCAGCTCACG 40 3 0.08 52 0 0 118 1 0.01 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 77768507 77768507 + Missense_Mutation SNP C C T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_024721 exon10 c.C9350T p.S3117F CATCCTCCTTGCC 115 22 0.19 107 0 0 1 0 0.00 RSPO2 340419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 109094847 109094847 + Missense_Mutation SNP G G C novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_178565 exon2 c.C20G p.S7C GCAAAGGAGAAAA 65 10 0.15 70 0 0 0 0 SCRIB 23513 mdanderson.org 37 8 144874951 144874951 + Silent SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_182706 exon30 c.C4104A p.P1368P GGCCTGGGGCACG 41 3 0.07 38 0 0 230 0 0.00 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu 37 8 144940608 144940608 + Missense_Mutation SNP C C T rs377487212 TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a EPPK1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 EPPK1 NM_031308 exon1 c.G6814A p.V2272I CGATGACGAAGCC 62 9 0.15 72 1 0.0138888889 0 1 50 0 0.00 TTC39B 158219 mdanderson.org 37 9 15175099 15175099 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_152574 exon19 c.C1876A p.P626T TGAACGGCACTAG 40 3 0.08 64 0 0 11 0 0.00 SLC28A3 64078 mdanderson.org 37 9 86917157 86917157 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_001199633 exon5 c.C482A p.P161H CTGCCAGGAGACA 52 3 0.06 95 0 0 4 0 0.00 CRB2 286204 mdanderson.org 37 9 126129537 126129537 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_173689 exon5 c.G841T p.D281Y CGCTCTGACCCGG 20 3 0.15 37 0 0 0 0 SEC16A 9919 mdanderson.org 37 9 139336215 139336215 + Missense_Mutation SNP G G T novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_014866 exon32 c.C7066A p.L2356M AGTTCAGCACCAG 52 3 0.06 85 0 0 78 0 0.00 EHMT1 79813 mdanderson.org 37 9 140729282 140729282 + Silent SNP C C T rs371136319 TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . NM_024757 exon27 c.C3774T p.C1258C CCGCTGCGGCTCC 54 3 0.06 84 0 0 83 0 0.00 RNU6-28 100873756 hgsc.bcm.edu 37 X 110653901 110653901 + RNA SNP T T C novel TCGA-YU-A912-01A-11D-A435-10 TCGA-YU-A912-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 468cbb8a-c062-4b63-8e48-644496a795e2 047fbeb8-426a-4b89-9920-743bf10f3b2a . . . . . . AAGAGATAGAGAG 62 6 0.10 66 0 0 0 0