Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ATAD3C 219293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1396296 1396296 + Missense_Mutation SNP C C T rs202189170 bycluster TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_001039211 exon10 c.C979T p.R327W GGAAAGCGGTAAG 72 11 0.15 87 0 0 15 1 0.07 MTOR 2475 broad.mit.edu 37 1 11264759 11264759 + Splice_Site SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . MTOR NM_004958 exon26 c.C3803A p.A1268D CCCCAGGCCTGTG 226 8 0.04 147 0 0 327 0 0 . 100421113 bcgsc.ca 37 1 17077196 17077196 + RNA SNP G G T rs1988816 bycluster;by2hit2allele TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . TGGAGAGTGCCCT 118 16 0.14 67 2 0.0298507463 0 0 HSPG2 3339 broad.mit.edu 37 1 22213941 22213941 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . HSPG2 NM_005529 exon8 c.C930A p.C310X GTCCTCGCAGTCC 104 3 0.03 59 0 0 311 0 0 CCDC28B 79140 broad.mit.edu 37 1 32670247 32670248 + Frame_Shift_Del DEL TG TG - novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . CCDC28B . . . . CGTCTATGTGTGT 169 8 0.05 150 0 0 21 0 0 GNG12-AS1 100289178 hgsc.bcm.edu;ucsc.edu 37 1 68564463 68564463 + RNA SNP C C A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . TAAAACCATGCAA 181 23 0.13 101 0 0 0 0 ST6GALNAC5 81849 broad.mit.edu 37 1 77334301 77334301 + Silent SNP A A G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . ST6GALNAC5 NM_030965 exon2 c.A135G p.Q45Q GCAGCAACAGCAG 177 6 0.03 85 1 0.0117647059 59 0 0 OLFML3 56944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 114523051 114523051 + Missense_Mutation SNP A A T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_020190 exon2 c.A212T p.K71M CAGAGAAGGAGCG 159 30 0.19 130 0 0 5 1 0.20 RRNAD1 51093 mdanderson.org 37 1 156704005 156704005 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_015997 exon6 c.G841T p.A281S GCCCTGGCCTCAG 89 4 0.04 70 0 0 22 0 0.00 ZC3H11A 9877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 203819655 203819655 + Missense_Mutation SNP T T C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_014827 exon18 c.T1952C p.V651A CCAAAGTGAACGT 192 32 0.17 142 0 0 6 3 0.50 CDHR1 92211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 85972858 85972858 + Missense_Mutation SNP G G C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_001171971 exon16 c.G1794C p.E598D AGACGAGGATGCA 148 16 0.11 93 0 0 0 0 ACSL5 51703 broad.mit.edu 37 10 114182136 114182136 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . ACSL5 NM_016234 exon17 c.G1698T p.K566N TGAGAAGACACAG 92 5 0.05 52 0 0 51 17 0 0.00 ZDHHC24 254359 mdanderson.org 37 11 66307129 66307129 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_207340 exon3 c.C726A p.C242X GTTGTGGCAGGGA 27 3 0.11 20 0 0 63 0 0.00 UNC93B1 81622 broad.mit.edu 37 11 67763107 67763107 + Silent SNP A A G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . CAGGGCACTGCCC 82 5 0.06 75 2 0.0266666667 72 0 0.00 BCL9L 283149 mdanderson.org 37 11 118769751 118769751 + Silent SNP G G A rs141872454 bycluster;by1000genomes TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd BCL9L_ENST00000392849,NS,carcinoma,0,2 BCL9L_ENST00000392849 NM_182557 exon8 c.C3873T p.D1291D GTATGCGTCGCCC 43 3 0.07 40 0 0 0 0 2 5 0 0.00 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 25398284 25398284 + Missense_Mutation SNP C C A rs121913529 bycluster TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd KRAS_ENST00000256078,NS,adenocarcinoma,0,25136 KRAS_ENST00000256078 NM_004985 exon2 c.G35T p.G12V ACGCCACCAGCTC 302 20 0.07 181 0 0 0 25136 1 0 0.00 RACGAP1 29127 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 50393482 50393482 + Missense_Mutation SNP G G C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_013277 exon10 c.C665G p.T222S GGAACAGTCACTG 101 10 0.10 94 0 0 7 0 0.00 KRT82 3888 mdanderson.org 37 12 52794398 52794398 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_033033 exon4 c.C690A p.D230E GGCTGTGTCCACG 47 3 0.06 31 0 0 0 0 HNRNPA1P10 664709 hgsc.bcm.edu 37 12 54677045 54677045 + RNA SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . GTACTTGGTGTGA 124 14 0.11 84 0 0 0 0 ZMYM2 7750 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 20610939 20610939 + Missense_Mutation SNP A A T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_001190964 exon13 c.A2182T p.N728Y ACTTGCAACTATT 136 12 0.09 126 0 0 3 0 0.00 NUPL1 9818 bcgsc.ca 37 13 25875927 25875927 + Missense_Mutation SNP T T C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . NUPL1 NM_014089 exon1 c.T16C p.S6P GGGTTCTCCTTCG 58 4 0.07 69 0 0 37 8 0 0.00 . 0 broad.mit.edu 37 13 52855276 52855277 + RNA DEL TG TG - rs72183844 alternate_allele TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . TGTGCTTGTGTGT 11 7 0.64 7 0 0 0 0 ACIN1 22985 broad.mit.edu 37 14 23530745 23530745 + Silent SNP T T G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . ACIN1 NM_014977 exon17 c.A3360C p.P1120P TGGGGGTGGGGGG 77 18 0.23 50 5 0.1 147 67 3 0.04 KIAA0586 9786 broad.mit.edu 37 14 58934640 58934640 + Splice_Site SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . KIAA0586 NM_001244189 exon18 c.G2601T p.Q867H TGTGCAGGTATGC 143 5 0.03 115 0 0 180 0 0 IRF2BPL 64207 mdanderson.org 37 14 77493785 77493785 + Silent SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_024496 exon1 c.G351A p.Q117Q CTGCTGCTGCTGC 19 3 0.16 16 0 0 1 0 0.00 TDP1 55775 mdanderson.org 37 14 90499479 90499479 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_018319 exon16 c.G1674T p.K558N ACAGAAGTTCTTC 106 5 0.05 69 0 0 14 0 0.00 TRMT61A 115708 mdanderson.org 37 14 104001019 104001019 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_152307 exon4 c.G731T p.S244I CTGTCAGCCTGCC 67 10 0.15 35 3 0.0857142857 13 0 0.00 TMEM179 388021 mdanderson.org 37 14 105070822 105070822 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_207379 exon1 c.C257A p.A86D TGCGCGGCGGCCA 44 3 0.07 38 0 0 0 0 . 0 broad.mit.edu 37 15 79023030 79023031 + RNA INS - - G rs35207108 bycluster;by1000genomes TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . CATGCCCGGCCCT 7 4 0.57 4 0 0 0 0 MSLN 10232 mdanderson.org 37 16 816065 816065 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_005823 exon12 c.C902T p.A301V AGACAGCCTGTCC 35 3 0.09 33 0 0 0 0 MEFV 4210 broad.mit.edu 37 16 3304501 3304501 + Silent SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd MEFV,NS,carcinoma,-2,1 MEFV NM_000243 exon2 c.C567A p.G189G GCAGGGGCCGGGG 38 4 0.11 29 2 0.0689655172 170 1 0 0 CREBBP 1387 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3830851 3830851 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_004380 exon8 c.G1705A p.G569S TGTTACCAGAGTT 127 15 0.12 89 0 0 1 0 0.00 SH2B1 25970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 28883695 28883695 + Silent SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_001145796 exon7 c.C1698T p.L566L CGTCCTCACCTTC 83 13 0.16 74 0 0 54 1 0.02 TANGO6 79613 mdanderson.org 37 16 68912021 68912021 + Missense_Mutation SNP G G T rs201648074 TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_024562 exon6 c.G1132T p.V378F TTGTAGGTTCTGG 86 5 0.06 83 0 0 0.002 0 0 PIEZO1 9780 broad.mit.edu 37 16 88800398 88800398 + Missense_Mutation SNP G G C rs62639697 byfrequency TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . PIEZO1 NM_001142864 exon17 c.C2245G p.Q749E CCTCCTGCTGCTG 79 3 0.04 75 0 0 79 0 0 GAS8 2622 mdanderson.org 37 16 90097758 90097758 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_001481 exon3 c.G142T p.E48X CGGGAGGAACGAA 44 3 0.07 43 0 0 1 0 0.00 CTC1 80169 mdanderson.org 37 17 8138529 8138529 + Silent SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_025099 exon8 c.C1281A p.G427G AACGGCGCCACGG 33 3 0.09 31 0 0 1 0 0.00 MYO1D 4642 broad.mit.edu 37 17 31105537 31105537 + Missense_Mutation SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . MYO1D NM_015194 exon3 c.C359T p.A120V ATGGCCGCAATAT 279 4 0.01 221 0 0 93 2 0 0.00 AOC3 8639 broad.mit.edu 37 17 41004673 41004673 + Missense_Mutation SNP T T C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . AOC3 NM_003734 exon1 c.T1313C p.L438P AGGGCCTCCCCCT 122 4 0.03 103 1 0.0097087379 88 1 0 0.00 KIF2B 84643 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 17 51901904 51901904 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd KIF2B,NS,carcinoma,0,2 KIF2B NM_032559 exon1 c.C1510T p.R504W GTGCTCCGGGACT 95 4 0.04 58 0 0 0 2 0 0 AMZ2P1 0 broad.mit.edu 37 17 62968690 62968690 + RNA SNP A A G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . TTCCACAAGTCTC 94 4 0.04 68 0 0 41 0 0.00 SDK2 54549 broad.mit.edu 37 17 71386453 71386453 + Missense_Mutation SNP C C A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . SDK2 NM_001144952 exon29 c.G4165T p.A1389S CCAAGGCCTCGGC 36 6 0.17 54 2 0.037037037 219 0 0 LLGL2 3993 broad.mit.edu;mdanderson.org 37 17 73568068 73568068 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . LLGL2 NM_004524 exon19 c.G2383T p.V795L CTCGAAGTGGCCC 35 3 0.09 20 0 0 155 66 0 0.00 RAC3 5881 broad.mit.edu 37 17 79991663 79991663 + Silent SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . RAC3 NM_005052 exon6 c.G537T p.P179P CTGCCCGCCCCCA 138 10 0.07 91 3 0.032967033 8 71 0 0.00 TCEB3B 51224 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 44560885 44560885 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_016427 exon1 c.G751A p.E251K ATTTCTCCCTGAT 150 16 0.11 94 0 0 0 0 CXXC1 30827 hgsc.bcm.edu 37 18 47812290 47812290 + Missense_Mutation SNP C C G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd CXXC1,NS,carcinoma,0,1 CXXC1 NM_001101654 exon5 c.G468C p.Q156H CTGCTGCTGGTGA 85 4 0.05 63 1 0.0158730159 0 1 26 0 0.00 MED16 10025 hgsc.bcm.edu 37 19 879943 879943 + Missense_Mutation SNP G G C rs76403059 bycluster TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd MED16,colon,carcinoma,0,1 MED16 NM_005481 exon8 c.C1347G p.H449Q CTTCCCGTGGCTG 130 6 0.05 111 2 0.018018018 0 1 7 0 0.00 PCSK4 54760 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 1487795 1487795 + Missense_Mutation SNP G G C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_017573 exon5 c.C582G p.S194R CTCTTTGCTGGGG 42 4 0.10 27 0 0 1 0 0.00 ILF3 3609 bcgsc.ca;mdanderson.org 37 19 10798068 10798068 + Silent SNP T T G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . ILF3 NM_017620 exon18 c.T2118G p.G706G TGGCGGTGGCGGC 111 16 0.14 81 5 0.0617283951 99 5 0 0.00 TECR 9524 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 14675087 14675087 + Silent SNP C C A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd TECR,NS,carcinoma,+1,1 TECR NM_138501 exon7 c.C477A p.R159R TTTGCGCAACATC 50 6 0.12 36 0 0 1 1 217 32 0.15 SPRED3 399473 hgsc.bcm.edu;mdanderson.org 37 19 38882866 38882866 + Missense_Mutation SNP T T C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd SPRED3_ENST00000396877,bladder,carcinoma,-1,2 SPRED3_ENST00000396877 NM_001042522 exon3 c.T361C p.S121P ACCCCCTCCTCCT 64 4 0.06 54 1 0.0185185185 -1 2 0 0 PAFAH1B3 5050 mdanderson.org 37 19 42806188 42806188 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_002573 exon2 c.C82A p.H28N ACCGATGGTGCTG 55 3 0.05 37 0 0 13 0 0.00 MEGF8 1954 mdanderson.org 37 19 42838351 42838351 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd MEGF8_ENST00000334370,NS,carcinoma,-1,2 MEGF8_ENST00000334370 NM_001271938 exon3 c.G544T p.G182C AGCCACGGCACCT 35 3 0.09 33 0 0 -1 2 0 0 KLK12 43849 ucsc.edu;bcgsc.ca 37 19 51534068 51534068 + Missense_Mutation SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . KLK12 NM_145895 exon4 c.C307T p.R103C CGGGACGCCGCCT 37 4 0.11 67 0 0 30 0 0 ZNF880 400713 broad.mit.edu;mdanderson.org 37 19 52888125 52888125 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . ZNF880 NM_001145434 exon4 c.C1292T p.T431I TTCACACTGGAGA 56 6 0.11 67 0 0 45 1 0 0.00 . 0 broad.mit.edu 37 2 38710019 38710019 + RNA DEL T T - novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . AAAAAATAAATAA 90 16 0.18 41 0 0 1 0 0.00 IL36A 27179 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 113763655 113763655 + Missense_Mutation SNP A A G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_014440 exon2 c.A115G p.M39V GACCGTATGTCTC 107 5 0.05 66 0 0 0 0 HOXD9 3235 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 176988212 176988212 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_014213 exon1 c.C716T p.S239L GCGGCTCGTCGGA 185 21 0.11 114 0 0 0 0 PRR21 643905 hgsc.bcm.edu 37 2 240982009 240982009 + Missense_Mutation SNP G G A rs202192655 TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd PRR21,NS,malignant_melanoma,0,2 PRR21 NM_001080835 exon1 c.C391T p.P131S CCGTGGGTGAAGA 20 5 0.25 8 1 0.125 0 2 0 0 NINL 22981 broad.mit.edu 37 20 25436407 25436407 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . NINL NM_025176 exon23 c.C3859A p.Q1287K TCAGCTGTTTCTC 153 7 0.05 118 3 0.0254237288 148 4 1 0.25 SERINC3 10955 broad.mit.edu 37 20 43142664 43142664 + Missense_Mutation SNP G G T rs370153515 alternate_allele TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . SERINC3 NM_006811 exon2 c.C57A p.S19R GGCACCGCTGCAG 116 4 0.03 94 0 0 42 0 0 SLC2A10 81031 broad.mit.edu 37 20 45354027 45354027 + Missense_Mutation SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . SLC2A10 NM_030777 exon2 c.G352A p.A118T TCCATGGCTTGCT 58 3 0.05 52 0 0 75 0 0 SPO11 23626 mdanderson.org 37 20 55904934 55904934 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_012444 exon1 c.C11T p.A4V CCTTTGCACCTAT 55 3 0.05 52 0 0 0 0 BAGE 85319 broad.mit.edu 37 21 11083997 11083998 + RNA INS - - G rs370113266 TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . TTTGTGTTTGTGT 6 2 0.33 4 0 0 0 0 BAGE 85319 broad.mit.edu 37 21 11083998 11083999 + RNA INS - - GTG novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . TTGTGTTTGTGTG 6 2 0.33 4 0 0 0 0 POM121L1P 25812 mdanderson.org 37 22 22985347 22985347 + RNA SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . GTGGCTGAGGCCC 21 2 0.10 12 0 0 0 0 TTC28 23331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 28501285 28501285 + Missense_Mutation SNP C C G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_001145418 exon8 c.G3289C p.V1097L ACATGACTGCTTG 382 37 0.10 241 0 0 0 0 NELFA 7469 mdanderson.org 37 4 1989687 1989687 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_005663 exon4 c.C625A p.H209N TGGCGTGGAAGGG 40 4 0.10 31 0 0 10 0 0.00 BEND4 389206 hgsc.bcm.edu;broad.mit.edu 37 4 42145741 42145742 + Frame_Shift_Del DEL AG AG - novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 AG AG Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . BEND4 NM_001159547 exon3 c.758_759del p.253_253del TTTTGTAGAGAGT 148 12 0.08 114 0 0 67 6 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu 37 4 55599320 55599320 + Missense_Mutation SNP G G T rs121913506 bycluster TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd KIT,colon,carcinoma,0,932 KIT NM_000222 exon17 c.G2446T p.D816Y GCCAGAGACATCA 116 11 0.09 62 1 0.0161290323 0 932 1 0 0.00 DSPP 1834 bcgsc.ca 37 4 88536953 88536953 + Missense_Mutation SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . DSPP NM_014208 exon5 c.G3139A p.D1047N AGCAGCGATAGCA 71 7 0.10 50 1 0.02 174 0 0 ANK2 287 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 114271404 114271404 + Missense_Mutation SNP A A C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_001148 exon37 c.A4425C p.K1475N AGAAAAAAGTAAG 55 5 0.09 34 0 0 0 0 DDX60 55601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 169146761 169146761 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_017631 exon34 c.G4600A p.E1534K AGTCCTCCATAAT 132 16 0.12 116 0 0 3 2 0.67 BRD9 65980 mdanderson.org 37 5 884095 884095 + Missense_Mutation SNP G G T rs372444870 alternate_allele TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_023924 exon8 c.C924A p.D308E AGCTTCGTCAGCT 44 3 0.07 50 0 0 6 0 0.00 SEPT8 23176 mdanderson.org 37 5 132096546 132096546 + Missense_Mutation SNP C C A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd SEPT8,NS,carcinoma,0,1 SEPT8 NM_015146 exon9 c.G1234T p.A412S GCAAGGCCTGCGA 116 14 0.12 61 1 0.0163934426 0 1 0 0 FAM53C 51307 broad.mit.edu 37 5 137681245 137681245 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . FAM53C NM_001135647 exon4 c.G868T p.E290X CGCCACGAGGAAG 113 3 0.03 99 0 0 35 2 0 0.00 KIAA1191 57179 mdanderson.org 37 5 175777718 175777718 + Silent SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_020444 exon6 c.G357A p.Q119Q AAAATGCTGAATG 46 3 0.07 39 0 0 13 0 0.00 LOC202181 0 broad.mit.edu 37 5 177099140 177099140 + RNA SNP T T A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . ACGATGTAATCCT 31 4 0.13 16 0 0 0 0 RPP40 10799 ucsc.edu 37 6 4995431 4995431 + Missense_Mutation SNP C C T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . RPP40 NM_006638 exon8 c.G973A p.E325K TTTTTTCCCAAGA 122 1 0.01 101 1 0.0099009901 36 71 7 0.10 PFDN6 10471 broad.mit.edu 37 6 33258148 33258148 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . PFDN6 NM_001185181 exon3 c.G181T p.G61C CTTCTGGGTCCGG 186 5 0.03 102 0 0 9 770 1 0.00 SLC26A8 116369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 35960389 35960389 + Silent SNP A A G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_052961 exon6 c.T690C p.S230S GTAAGCACTCATT 57 9 0.16 60 0 0 0 0 SMPD2 6610 broad.mit.edu 37 6 109764880 109764880 + Silent SNP A A G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . SMPD2 NM_003080 exon10 c.A1044G p.G348G TGGAGGAGGGGCC 106 4 0.04 64 0 0 25 83 2 0.02 TTYH3 80727 mdanderson.org 37 7 2686862 2686862 + Missense_Mutation SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_025250 exon3 c.G380A p.R127H CCAACCGCACGGT 43 3 0.07 29 0 0 4 0 0.00 TSPAN13 27075 broad.mit.edu 37 7 16817466 16817466 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . TSPAN13 NM_014399 exon4 c.G356T p.R119L GTGCTCGAAATGA 253 5 0.02 128 0 0 13 0 0 . 0 broad.mit.edu 37 7 57701205 57701207 + RNA DEL CAG CAG - novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 CAG CAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . ATGGCACAGTGCT 6 2 0.33 8 0 0 0 0 COL26A1 136227 broad.mit.edu 37 7 101091318 101091318 + RNA DEL A A - novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . GAAGCCAAAAACA 6 2 0.33 5 0 0 0 0 NUP205 23165 broad.mit.edu 37 7 135291662 135291662 + Splice_Site SNP A A G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . NUP205 NM_015135 exon21 c.A3069G p.P1023P AGATCCAGGTATA 160 3 0.02 93 0 0 198 0 0 GIMAP6 474344 broad.mit.edu 37 7 150325069 150325069 + Missense_Mutation SNP T T C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . GIMAP6 NM_001244072 exon3 c.A827G p.E276G TGCTCCTCCCCCT 149 5 0.03 93 2 0.0215053763 60 1 0 0.00 ATG9B 285973 broad.mit.edu 37 7 150715013 150715013 + Missense_Mutation SNP A A C novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . ATG9B . . . . TCCCCAACCCCAG 90 6 0.07 66 2 0.0303030303 51 1 0 0.00 MFHAS1 9258 broad.mit.edu 37 8 8747748 8747748 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . MFHAS1 NM_004225 exon1 c.C2821A p.L941M TGGACAGGGTGTC 244 4 0.02 182 0 0 58 4 0 0.00 DUSP26 78986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 33449560 33449560 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . NM_024025 exon4 c.C607A p.R203S GCCTGCGGTCCAG 83 11 0.13 71 0 0 0 0 EPPK1 83481 bcgsc.ca;mdanderson.org 37 8 144940501 144940501 + Silent SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . EPPK1 NM_031308 exon1 c.C6921T p.V2307V GCCGGTGACGGCG 150 12 0.08 89 1 0.0112359551 199 3 0 0.00 PLEC 5339 broad.mit.edu;mdanderson.org 37 8 144996952 144996952 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . PLEC NM_201380 exon31 c.C7556A p.A2519D CGCTCAGCCTCAG 62 10 0.16 37 3 0.0810810811 1144 5 0 0.00 . 0 broad.mit.edu 37 9 66518311 66518312 + RNA INS - - TATTTTATTTTATTT novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . TGTTTACTATTTT 6 2 0.33 7 0 0 0 0 LOC100132077 0 broad.mit.edu 37 9 97109268 97109275 + RNA DEL AAAAAAGA AAAAAAGA - rs371617960 bycluster;alternate_allele TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 AAAAAAGA AAAAAAGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . AAAAAGAAAAAAG 6 2 0.33 8 0 0 0 0 tRNA-Cys 0 hgsc.bcm.edu 37 MT 5824 5824 + RNA SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . CTCGGAGCTGGTA 234 60 0.26 94 0 0 0 0 SHROOM2 357 broad.mit.edu 37 X 9863376 9863376 + Silent SNP T T G novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . SHROOM2 NM_001649 exon4 c.T1428G p.G476G GCAGGGTCCCCGG 69 12 0.17 54 5 0.0925925926 139 1 0 0.00 . 0 bcgsc.ca 37 X 27537820 27537820 + RNA SNP G G A novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . . . . . . AAAAATGCGCGTG 50 9 0.18 49 0 0 0 0 FOXP3 50943 broad.mit.edu 37 X 49113925 49113925 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . FOXP3 NM_014009 exon4 c.C413A p.T138N ACCCCAGTGGCGG 224 5 0.02 128 0 0 26 0 0 H2BFM 286436 broad.mit.edu 37 X 103294936 103294936 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . H2BFM NM_001164416 exon1 c.G393T p.K131N GGGCAAGCTCGCC 56 8 0.14 40 0 0 25 1 0 0.00 ARHGAP4 393 broad.mit.edu 37 X 153187251 153187251 + Missense_Mutation SNP G G T novel TCGA-ZM-AA05-01A-12D-A435-10 TCGA-ZM-AA05-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7861cef-4a7b-40e7-8a95-da3755f13c76 0d13d0e4-a10b-4704-b72f-3297e33db2fd . ARHGAP4 NM_001666 exon2 c.C79A p.Q27K TCAGCTGCCAGCG 35 7 0.20 17 1 0.0588235294 103 7 0 0.00