Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV AGBL4 84871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 50163073 50163073 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_032785 exon3 c.A194G p.E65G TCATACTCAAACT 347 33 0.10 262 0 0 1 0 0.00 VASH2 79805 mdanderson.org 37 1 213125107 213125107 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_024749 exon2 c.C223A p.P75T GTGCACCCTAAGG 35 3 0.09 57 0 0 0 0 GNPAT 8443 mdanderson.org 37 1 231396280 231396280 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_014236 exon3 c.G289T p.D97Y TCTGTGGATGTCC 42 3 0.07 33 0 0 3 0 0.00 PDLIM1 9124 mdanderson.org 37 10 97006973 97006973 + Silent SNP T T C novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_020992 exon5 c.A684G p.K228K ATTACCTTTTTCT 42 3 0.07 59 0 0 172 0 0.00 WBP1L 54838 mdanderson.org 37 10 104503811 104503811 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_001083913 exon1 c.A1G p.M1V AGGGGGATGGAGA 29 4 0.14 32 1 0.03125 1 0 0.00 MTCH2 23788 mdanderson.org 37 11 47653218 47653218 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_014342 exon6 c.C415A p.H139N AGGGATGTGTGAT 48 3 0.06 63 0 0 71 0 0.00 OR5D18 219438 mdanderson.org 37 11 55587808 55587808 + Missense_Mutation SNP C C T rs149397041 alternate_allele TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c OR5D18,NS,adenocarcinoma,0,7 OR5D18 NM_001001952 exon1 c.C703T p.R235C AGTGGGCGCCGCA 115 5 0.04 118 0 0 0 7 0 0 SORL1 6653 broad.mit.edu;mdanderson.org 37 11 121466453 121466453 + Nonsense_Mutation SNP C C A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . SORL1 NM_003105 exon32 c.C4491A p.C1497X AGATTGCCAGGAT 42 5 0.12 46 0 0 218 0 0 USP5 8078 mdanderson.org 37 12 6970675 6970675 + Missense_Mutation SNP G G T rs199632125 by1000genomes TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_003481 exon13 c.G1567T p.V523F GAACTGGTTCGGG 46 3 0.07 33 0 0 0 27 0 0.00 MTIF3 219402 ucsc.edu 37 13 28014392 28014392 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . MTIF3 NM_001166263 exon4 c.G194A p.G65E TTTTTTCCTTCAT 123 2 0.02 150 0 0 21 133 14 0.11 rescued with RNA-seq IRS2 8660 mdanderson.org 37 13 110434970 110434970 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_003749 exon1 c.G3431A p.R1144H CGGCGGCGGCCCC 33 3 0.09 53 0 0 0 0 NID2 22795 mdanderson.org 37 14 52535528 52535528 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_007361 exon1 c.C185A p.A62E GGATTCGCCAGCT 46 3 0.07 48 0 0 0 0 SYNE2 23224 mdanderson.org 37 14 64626069 64626069 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_015180 exon87 c.G16003T p.E5335X AGTTGGGAGAAAC 45 3 0.07 46 0 0 9 0 0.00 RRN3P2 0 broad.mit.edu 37 16 29102416 29102416 + RNA DEL A A - novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . . . . . AAAAATAAAAAAA 7 2 0.29 6 0 0 0 0 MYLK3 91807 mdanderson.org 37 16 46762966 46762966 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_182493 exon7 c.G1742A p.S581N TGCTTGCTCTCGA 43 3 0.07 48 0 0 0 0 CES4A 283848 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 67036993 67036993 + Silent SNP G G T rs181709052 by1000genomes;alternate_allele TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_173815 exon6 c.G711T p.S237S AGCCTCGGGTCTC 82 4 0.05 152 0 0 2 0 0.00 ZNF469 84627 mdanderson.org 37 16 88502519 88502519 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c ZNF469,NS,carcinoma,-1,2 ZNF469 NM_001127464 exon2 c.C8557A p.R2853S GGGAAGCGCTGTG 52 3 0.06 52 0 0 -1 2 0 0 RASD1 51655 bcgsc.ca 37 17 17398600 17398600 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . RASD1 NM_016084 exon2 c.C685T p.R229W CGGCCCGCAGCAG 45 4 0.09 73 0 0 8 42 0 0.00 LRRC37BP1 0 broad.mit.edu 37 17 28960993 28960994 + RNA INS - - TTTTC novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . . . . . TTTTCTTTTTTTT 75 23 0.31 74 0 0 0 0 SYNRG 11276 mdanderson.org 37 17 35889886 35889886 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_198882 exon19 c.A3500G p.K1167R GATACCTTTTCTT 44 3 0.07 44 0 0 9 0 0.00 KANSL1 284058 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 44248976 44248976 + Silent SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_001193466 exon2 c.G534A p.G178G TTTTCCCCCATTG 91 5 0.05 99 0 0 10 2 0.20 TGIF1 7050 mdanderson.org 37 18 3457889 3457889 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_170695 exon3 c.C1157T p.A386V ATGTTGCACTCAA 16 2 0.13 16 0 0 190 0 0.00 EPB41L3 23136 mdanderson.org 37 18 5445201 5445201 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_012307 exon4 c.C424A p.H142N TCAAGTGTTCACA 38 3 0.08 57 1 0.0175438596 0 0 TTC39C 125488 mdanderson.org 37 18 21698092 21698092 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_001135993 exon8 c.G1082T p.W361L TAGGTTGGTGCAG 42 3 0.07 52 0 0 6 0 0.00 SLC25A23 79085 mdanderson.org 37 19 6444206 6444206 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_024103 exon9 c.C1178A p.A393D TAACTGGCTATCT 32 3 0.09 54 0 0 15 0 0.00 GPATCH1 55094 mdanderson.org 37 19 33610018 33610018 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_018025 exon17 c.G2516T p.C839F TCTTCTGCCCCAG 45 3 0.07 35 0 0 66 0 0.00 ZNF135 7694 broad.mit.edu 37 19 58578438 58578438 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c ZNF135_ENST00000401053,right_upper_lobe,carcinoma,0,2 ZNF135 NM_007134 exon4 c.A658G p.R220G GGAAAAAGGGAGA 65 3 0.05 71 0 0 159 2 17 0 0.00 ALK 238 mdanderson.org 37 2 30143262 30143262 + Silent SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_004304 exon1 c.C264A p.R88R CGAGCCGCGGGCC 37 3 0.08 33 0 0 0 0 RANBP2 5903 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 109382856 109382856 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . RANBP2 NM_006267 exon20 c.C5861T p.T1954I AATCAACTTCAGG 1062 79 0.07 872 0 0 488 4 0 0.00 SMOX 54498 hgsc.bcm.edu;broad.mit.edu 37 20 4162476 4162476 + Frame_Shift_Del DEL C C - novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . SMOX NM_175839 exon4 c.461delT p.F154fs GTTCTTCCGGCAC 114 11 0.10 116 0 0 119 9 0 0.00 TTLL9 164395 mdanderson.org 37 20 30486361 30486361 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_001008409 exon4 c.G199T p.V67L GTGGAAGTGAAGG 106 5 0.05 147 0 0 0 0 SALL4 57167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 50408195 50408195 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_020436 exon2 c.G827A p.S276N TTCTGGCTGAGCA 47 5 0.11 45 0 0 12 2 0.17 CDC42EP1 11135 mdanderson.org 37 22 37964167 37964167 + Silent SNP G G A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_152243 exon3 c.G516A p.P172P AAAGCCGCATGAC 46 3 0.07 70 0 0 45 0 0.00 ATP2B2 491 mdanderson.org 37 3 10426999 10426999 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_001001331 exon8 c.C953T p.A318V GCTGCCGCACCGT 46 3 0.07 38 1 0.0263157895 0 0 STT3B 201595 mdanderson.org 37 3 31641852 31641852 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_178862 exon5 c.G778T p.V260F CTATAGGTCTCTG 37 3 0.08 40 0 0 9 0 0.00 PTPN23 25930 mdanderson.org 37 3 47446253 47446253 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c PTPN23,NS,carcinoma,0,1 PTPN23 NM_015466 exon3 c.G271A p.A91T GAGGCCGCTGTCC 64 5 0.08 81 0 0 0 1 9 0 0.00 FAM86EP 0 broad.mit.edu 37 4 3955156 3955156 + RNA DEL C C - novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . . . . . CATGGGCCAGCTC 6 2 0.33 7 0 0 0 0 CCDC96 257236 broad.mit.edu;mdanderson.org 37 4 7044591 7044591 + Silent SNP C C T rs372279731 TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . CCDC96 NM_153376 exon1 c.G75A p.P25P CTTGGACGGCCGC 27 3 0.11 19 0 0 34 1 0 0.00 KIT 3815 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 55599320 55599320 + Missense_Mutation SNP G G T rs121913506 bycluster TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c KIT,colon,carcinoma,0,932 KIT NM_000222 exon17 c.G2446T p.D816Y GCCAGAGACATCA 82 8 0.10 54 0 0 7396 932 26 8 0.31 ADH1B 125 hgsc.bcm.edu;mdanderson.org 37 4 100232749 100232749 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c ADH1B,NS,carcinoma,-1,1 ADH1B NM_000668 exon7 c.C893A p.A298D TGGGAAGCAGGAG 113 5 0.04 114 0 0 -1 1 3 0 0.00 RXFP1 59350 mdanderson.org 37 4 159573048 159573048 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_001253727 exon18 c.G2196T p.M732I ATCTATGGACAGC 54 3 0.06 62 0 0 0 0 DIAPH1 1729 hgsc.bcm.edu 37 5 140953563 140953563 + Silent SNP T T A rs374236039 TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c DIAPH1,NS,carcinoma,0,1 DIAPH1 NM_005219 exon16 c.A1854T p.P618P AGGAGGTGGAGGA 24 4 0.17 26 0 0 0 1 1 0 0.00 EEF1A1 1915 hgsc.bcm.edu 37 6 74228474 74228474 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c EEF1A1,NS,carcinoma,0,2 EEF1A1 NM_001402 exon5 c.G719A p.R240H GTTGGACGAGTTG 113 5 0.04 110 0 0 0 2 5033 0 0.00 TBP 6908 hgsc.bcm.edu 37 6 170871004 170871004 + Silent SNP G G A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_003194 exon3 c.G180A p.Q60Q GCAGCAGCAACAA 67 10 0.15 54 0 0 12 1 0.08 GNA12 2768 mdanderson.org 37 7 2883564 2883564 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_007353 exon1 c.C232A p.R78S TGATGCGCATCTG 52 3 0.06 61 0 0 3 0 0.00 CHN2 1124 mdanderson.org 37 7 29438103 29438103 + Splice_Site SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_004067 exon5 c.290+1G>T . TCTCAGGTGAGGC 49 3 0.06 40 0 0 1 0 0.00 WNK2 65268 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 96024344 96024344 + Silent SNP C C T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . WNK2 NM_006648 exon12 c.C3315T p.A1105A GATCGCCAGCCCT 103 7 0.07 111 1 0.009009009 277 0 0 FBXW5 54461 mdanderson.org 37 9 139835404 139835404 + Silent SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_018998 exon9 c.C1677A p.S559S AAGCCAGGAGAAG 36 3 0.08 44 0 0 202 0 0.00 ARHGAP6 395 hgsc.bcm.edu 37 X 11197553 11197553 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_006125 exon7 c.G1349T p.R450L ATCCCACGGTCAA 68 4 0.06 52 0 0 0 0 NUDT10 170685 mdanderson.org 37 X 51075901 51075901 + Silent SNP G G A rs2801627 bycluster TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_153183 exon2 c.G84A p.E28E GAGCGAGCGCGAG 202 9 0.04 198 1 0.0050505051 0 0 AMER1 139285 mdanderson.org 37 X 63410103 63410103 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . . NM_152424 exon2 c.C3064A p.R1022S AGGGACGAGCTAG 49 3 0.06 45 0 0 0 0 SMARCA1 6594 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 128625996 128625996 + Silent SNP G G A novel TCGA-ZM-AA0D-01A-11D-A435-10 TCGA-ZM-AA0D-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbb77b02-9739-4272-bf41-30251840590b 7ac40e81-4d59-492f-a5cf-f3b25df9905c . SMARCA1 NM_003069 exon14 c.C1737T p.L579L AATTCCGAGACCT 209 27 0.13 189 0 0 126 3 0 0.00