Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CORO7-PAM16	100529144	broad.mit.edu	37	16	4411173	4411173	+	Silent	SNP	A	A	C			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr16:4411173A>C	uc002cwf.3	-	17	2207	c.1764T>G	c.(1762-1764)acT>acG	p.T588T	CORO7-PAM16_uc002cwe.3_Non-coding_Transcript|CORO7-PAM16_uc002cwg.4_Silent_p.T368T|CORO7-PAM16_uc002cwh.4_Silent_p.T588T|CORO7-PAM16_uc010uxh.2_Silent_p.T570T|CORO7-PAM16_uc010uxi.2_Silent_p.T503T|CORO7-PAM16_uc002cwi.1_Silent_p.T368T|CORO7-PAM16_uc010uxj.1_Non-coding_Transcript	NM_001201479	NP_001188408			Homo sapiens CORO7-PAM16 readthrough (CORO7-PAM16), mRNA.																		CTGTGAGCACAGTCTCTGGCG	0.652000													13	25					0	0	1	0	0
ZNF33B	7582	broad.mit.edu	37	10	43088158	43088158	+	Missense_Mutation	SNP	T	T	C			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr10:43088158T>C	uc001jaf.1	-	4	2355	c.2240A>G	c.(2239-2241)aAg>aGg	p.K747R	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Missense_Mutation_p.K635R|ZNF33B_uc001jad.3_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	Homo sapiens zinc finger protein 33B (ZNF33B), mRNA.	747						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|endometrium(4)|kidney(1)|large_intestine(6)|lung(15)|skin(1)|stomach(1)	29						TTCATAGGGCTTTTCCCCTGT	0.373000													3	100					0	0	1	0	0
MRPS31	10240	broad.mit.edu	37	13	41331142	41331142	+	Missense_Mutation	SNP	T	T	A			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr13:41331142T>A	uc001uxm.4	-	3	682	c.607A>T	c.(607-609)Aac>Tac	p.N203Y		NM_005830	NP_005821	Q92665	RT31_HUMAN	Homo sapiens mitochondrial ribosomal protein S31 (MRPS31), nuclear gene encoding mitochondrial protein, mRNA.	203						mitochondrion|ribosome	protein domain specific binding			breast(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(6)|upper_aerodigestive_tract(1)	13		Lung NSC(96;3.55e-06)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;1.52e-08)|Epithelial(112;7.63e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000192)|GBM - Glioblastoma multiforme(144;0.00233)|BRCA - Breast invasive adenocarcinoma(63;0.0706)		GATATTATGTTACTGAAACTG	0.343000													18	19					0	0	1	0	0
FAM83E	54854	broad.mit.edu	37	19	49116552	49116552	+	Silent	SNP	T	T	C			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr19:49116552T>C	uc002pjn.2	-	0	143	c.78A>G	c.(76-78)ctA>ctG	p.L26L		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	Homo sapiens family with sequence similarity 83, member E (FAM83E), mRNA.	26										NS(1)|endometrium(2)|large_intestine(1)|lung(3)|ovary(1)|urinary_tract(2)	10		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		CCTCGGAATATAGAAAGCCGG	0.701000													6	6					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24923276	24923276	+	Silent	SNP	G	G	A			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr15:24923276G>A	uc001ywo.3	+	0	2736	c.2262G>A	c.(2260-2262)agG>agA	p.R754R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	Homo sapiens chromosome 15 open reading frame 2 (C15orf2), mRNA.	754					cell differentiation|multicellular organismal development|spermatogenesis			p.V753F(1)		NS(2)|autonomic_ganglia(1)|breast(1)|central_nervous_system(2)|cervix(1)|endometrium(13)|kidney(1)|large_intestine(28)|lung(77)|ovary(5)|pancreas(1)|skin(8)	140		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		AGTCAGTCAGGGCACCAGCTA	0.572000													7	191					0	0	1	0	0
NGFR	4804	broad.mit.edu	37	17	47583935	47583935	+	Silent	SNP	G	G	A			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr17:47583935G>A	uc002ioz.4	+	2	608	c.483G>A	c.(481-483)gtG>gtA	p.V161V		NM_002507	NP_002498	P08138	TNR16_HUMAN	Homo sapiens nerve growth factor receptor (NGFR), mRNA.	161					anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(4)|liver(1)|lung(7)|ovary(1)	17	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					CCAACCACGTGGACCCGTGCC	0.701000													9	9					0	0	1	0	0
DDX23	9416	broad.mit.edu	37	12	49230719	49230719	+	Missense_Mutation	SNP	A	A	G			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr12:49230719A>G	uc001rsm.3	-	8	1059	c.968T>C	c.(967-969)cTa>cCa	p.L323P		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (DDX23), mRNA.	323						U5 snRNP|catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			NS(1)|cervix(1)|kidney(4)|large_intestine(6)|lung(17)|ovary(1)|prostate(1)|skin(2)|urinary_tract(3)	36						CTTCTCCATTAGGTCTCCATA	0.532000													4	404					0	0	1	0	0
YEATS4	8089	broad.mit.edu	37	12	69756619	69756619	+	Missense_Mutation	SNP	G	G	A			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr12:69756619G>A	uc001sux.3	+	1	324	c.103G>A	c.(103-105)Gga>Aga	p.G35R		NM_006530	NP_006521	O95619	YETS4_HUMAN	Homo sapiens YEATS domain containing 4 (YEATS4), mRNA.	35	YEATS.				histone H2A acetylation|histone H4 acetylation|mitosis|positive regulation of transcription, DNA-dependent|regulation of growth	NuA4 histone acetyltransferase complex|nuclear matrix	DNA binding|protein C-terminus binding|sequence-specific DNA binding transcription factor activity|structural constituent of cytoskeleton			breast(1)|central_nervous_system(1)|kidney(2)|large_intestine(1)	5	all_epithelial(5;9.25e-35)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;6.89e-18)|BRCA - Breast invasive adenocarcinoma(5;3.14e-09)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			TCGGTATTTTGGAAAGAAAAG	0.323000													8	59					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101726729	101726729	+	Missense_Mutation	SNP	C	C	T			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr5:101726729C>T	uc003knn.3	-	10	2007	c.1835G>A	c.(1834-1836)cGt>cAt	p.R612H	SLCO6A1_uc003kno.3_Missense_Mutation_p.R359H|SLCO6A1_uc003knp.3_Missense_Mutation_p.R612H|SLCO6A1_uc003knq.3_Missense_Mutation_p.R550H	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	Homo sapiens solute carrier organic anion transporter family, member 6A1 (SLCO6A1), mRNA.	612						integral to membrane|plasma membrane	transporter activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(17)|lung(22)|ovary(3)|prostate(4)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(1)	60		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		GGCCAGAGAACGCAGTTTGTC	0.328000													36	66					0	0	1	0	0
DHRS4	10901	broad.mit.edu	37	14	24459498	24459498	+	Missense_Mutation	SNP	A	A	G			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr14:24459498A>G	uc001wli.4	+	1	366	c.236A>G	c.(235-237)gAg>gGg	p.E79G	DHRS4_uc021rrd.1_Intron|DHRS4_uc021rrf.1_Missense_Mutation_p.E77G|DHRS4_uc001wld.4_Intron|DHRS4_uc001wle.4_Intron|DHRS4_uc001wlc.4_Intron|DHRS4L2_uc021rra.1_3'UTR|DHRS4_uc021rrb.1_5'UTR|DHRS4_uc021rrc.1_5'UTR|DHRS4_uc021rre.1_Missense_Mutation_p.E51G|DHRS4_uc010tnt.2_Missense_Mutation_p.E77G	NM_198083	NP_001180565	Q9BTZ2	DHRS4_HUMAN	Homo sapiens dehydrogenase/reductase (SDR family) member 4 like 2 (DHRS4L2), transcript variant 1, mRNA.	79						mitochondrion|nuclear membrane|peroxisome	binding|carbonyl reductase (NADPH) activity			central_nervous_system(2)|endometrium(1)|kidney(3)|large_intestine(1)|lung(4)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	14				GBM - Glioblastoma multiforme(265;0.00962)	Vitamin A(DB00162)	CTGCAGGGGGAGGGGCTGAGC	0.687000													3	50					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57572249	57572249	+	Missense_Mutation	SNP	A	A	G			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr12:57572249A>G	uc001snd.3	+	26	4935	c.4469A>G	c.(4468-4470)gAg>gGg	p.E1490G		NM_002332	NP_002323	Q07954	LRP1_HUMAN	Homo sapiens low density lipoprotein receptor-related protein 1 (LRP1), mRNA.	1490					aorta morphogenesis|apoptotic cell clearance|negative regulation of Wnt receptor signaling pathway|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			NS(1)|breast(9)|central_nervous_system(3)|cervix(3)|endometrium(33)|haematopoietic_and_lymphoid_tissue(4)|kidney(10)|large_intestine(26)|lung(58)|ovary(10)|pancreas(2)|prostate(11)|skin(7)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(5)	184				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TACGGGGGGGAGGTCTACTGG	0.592000													3	73					0	0	1	0	0
RABEP2	79874	broad.mit.edu	37	16	28920058	28920058	+	Missense_Mutation	SNP	G	G	T			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr16:28920058G>T	uc002drq.3	-	7	1165	c.1117C>A	c.(1117-1119)Ctg>Atg	p.L373M	NPIPL1_uc010vct.2_Intron|RABEP2_uc010vdf.2_Missense_Mutation_p.L302M|RABEP2_uc010byn.3_Missense_Mutation_p.L341M	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	Homo sapiens rabaptin, RAB GTPase binding effector protein 2 (RABEP2), mRNA.	373					endocytosis|protein transport	early endosome	GTPase activator activity|growth factor activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(3)|lung(6)|ovary(1)|skin(1)	16						TCATGGTGCAGGCACTTGTGG	0.602000													41	71					0	0	1	0	0
TBC1D12	23232	broad.mit.edu	37	10	96163149	96163149	+	Frame_Shift_Del	DEL	C	C	-			TCGA-ET-A2N1-01A-11D-A18F-08	TCGA-ET-A2N1-10A-01D-A18F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7ed3e66e-f784-483f-ac37-1300736584a4	7e8e39e1-ce53-49ec-9f65-b0e9afcddeb5	g.chr10:96163149delC	uc001kjr.2	+	0	964	c.779delC	c.(778-780)gcgfs	p.A260fs		NM_015188	NP_056003	O60347	TBC12_HUMAN	Homo sapiens TBC1 domain family, member 12 (TBC1D12), mRNA.	260						intracellular	Rab GTPase activator activity			breast(1)|central_nervous_system(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(5)|upper_aerodigestive_tract(2)	20		Colorectal(252;0.0429)				AATGGGGGTGCGGAGCCGCGC	0.701													2	4	---	---	---	---