Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Genome_Change Annotation_Transcript Transcript_Strand Transcript_Exon Transcript_Position cDNA_Change Codon_Change Protein_Change Other_Transcripts Refseq_mRNA_Id Refseq_prot_Id SwissProt_acc_Id SwissProt_entry_Id Description UniProt_AApos UniProt_Region UniProt_Site UniProt_Natural_Variations UniProt_Experimental_Info GO_Biological_Process GO_Cellular_Component GO_Molecular_Function COSMIC_overlapping_mutations COSMIC_fusion_genes COSMIC_tissue_types_affected COSMIC_total_alterations_in_gene Tumorscape_Amplification_Peaks Tumorscape_Deletion_Peaks TCGAscape_Amplification_Peaks TCGAscape_Deletion_Peaks DrugBank ref_context gc_content CCLE_ONCOMAP_overlapping_mutations CCLE_ONCOMAP_total_mutations_in_gene CGC_Mutation_Type CGC_Translocation_Partner CGC_Tumor_Types_Somatic CGC_Tumor_Types_Germline CGC_Other_Diseases DNARepairGenes_Role FamilialCancerDatabase_Syndromes MUTSIG_Published_Results OREGANNO_ID OREGANNO_Values t_alt_count t_ref_count validation_alt_allele validation_method validation_status validation_tumor_sample pox qox pox_cutoff isArtifactMode oxoGCut HSPA4 3308 broad.mit.edu 37 5 132400700 132400700 + Missense_Mutation SNP C C T TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr5:132400700C>T uc003kyj.3 + 1 417 c.136C>T c.(136-138)Cgt>Tgt p.R46C NM_002154 NP_002145 P34932 HSP74_HUMAN Homo sapiens heat shock 70kDa protein 4 (HSPA4), mRNA. 46 cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein cytoplasm|nucleus ATP binding NS(2)|breast(4)|central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(9)|lung(10)|stomach(1) 32 KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365) TCCTAAGAATCGTTCAATTGG 0.343000 6 157 0 0 1 0 0 DCAKD 79877 broad.mit.edu 37 17 43101857 43101857 + Missense_Mutation SNP C C T rs146466512 byFrequency TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr17:43101857C>T uc010daa.1 - 4 812 c.640G>A c.(640-642)Gct>Act p.A214T DCAKD_uc010dab.1_Missense_Mutation_p.A214T|DCAKD_uc002ihx.2_Missense_Mutation_p.A214T NM_001128631 NP_079095 Q8WVC6 DCAKD_HUMAN Homo sapiens dephospho-CoA kinase domain containing (DCAKD), transcript variant 2, mRNA. 214 coenzyme A biosynthetic process ATP binding|dephospho-CoA kinase activity cervix(1)|endometrium(1)|large_intestine(1)|lung(2)|skin(1) 6 Prostate(33;0.155) GCAATGGCAGCGAGCCCTGTG 0.617000 23 77 0 0 1 0 0 XPO4 64328 broad.mit.edu 37 13 21374986 21374986 + Missense_Mutation SNP T T C TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr13:21374986T>C uc001unq.4 - 13 1997 c.1961A>G c.(1960-1962)gAa>gGa p.E654G NM_022459 NP_071904 Q9C0E2 XPO4_HUMAN Homo sapiens exportin 4 (XPO4), mRNA. 654 protein transport cytoplasm|nucleus protein binding breast(1)|endometrium(10)|kidney(4)|large_intestine(7)|lung(14)|ovary(1)|prostate(3)|upper_aerodigestive_tract(1) 41 all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244) all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548) ATACAGTTTTTCATCCACCAG 0.368000 21 293 0 0 1 0 0 APBA1 320 broad.mit.edu 37 9 72082746 72082746 + Missense_Mutation SNP C C T TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr9:72082746C>T uc004ahh.2 - 4 1751 c.1475G>A c.(1474-1476)aGg>aAg p.R492K NM_001163 NP_001154 Q02410 APBA1_HUMAN Homo sapiens amyloid beta (A4) precursor protein-binding, family A, member 1 (APBA1), mRNA. 492 PID. axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission synaptic vesicle p.R492S(2) endometrium(4)|kidney(2)|large_intestine(12)|lung(13)|prostate(3)|skin(3) 37 CACCTTGATCCTGCTTACGGC 0.527000 8 235 0 0 1 0 0 KIAA0195 9772 broad.mit.edu 37 17 73489653 73489653 + Missense_Mutation SNP A A G TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr17:73489653A>G uc010wsa.2 + 15 2390 c.2198A>G c.(2197-2199)tAc>tGc p.Y733C KIAA0195_uc002jnz.4_Missense_Mutation_p.Y723C|KIAA0195_uc010wsb.2_Missense_Mutation_p.Y363C|KIAA0195_uc002job.4_5'Flank NM_014738 NP_055553 Q12767 K0195_HUMAN Homo sapiens KIAA0195 (KIAA0195), mRNA. 723 ATP biosynthetic process|cation transport integral to membrane ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism breast(2)|endometrium(5)|kidney(2)|large_intestine(7)|lung(17)|ovary(5)|skin(2)|stomach(1)|urinary_tract(1) 42 all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246) all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154) GCTGACATCTACCCTCTCTCG 0.602000 44 72 0 0 1 0 0 NUP210L 91181 broad.mit.edu 37 1 154101784 154101784 + Silent SNP G G A TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr1:154101784G>A uc001fdw.3 - 7 1119 c.1047C>T c.(1045-1047)tgC>tgT p.C349C NUP210L_uc009woq.3_5'UTR|NUP210L_uc010peh.2_Silent_p.C349C NM_207308 NP_997191 Q5VU65 P210L_HUMAN Homo sapiens nucleoporin 210kDa-like (NUP210L), transcript variant 1, mRNA. 349 integral to membrane NS(1)|breast(6)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(12)|lung(34)|ovary(4)|pancreas(1)|prostate(2)|skin(6)|urinary_tract(2) 80 all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128) LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198) CATATATGGTGCAATTTGGGA 0.368000 11 135 0 0 1 0 0 SASH1 23328 broad.mit.edu 37 6 148840738 148840738 + Silent SNP C C G TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr6:148840738C>G uc003qme.1 + 9 1393 c.918C>G c.(916-918)ctC>ctG p.L306L SASH1_uc011eeb.1_Silent_p.L67L NM_015278 NP_056093 O94885 SASH1_HUMAN Homo sapiens SAM and SH3 domain containing 1 (SASH1), mRNA. 306 protein binding breast(4)|central_nervous_system(1)|endometrium(9)|kidney(1)|large_intestine(11)|lung(20)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1) 52 Ovarian(120;0.0169) OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701) GGTCCGCCCTCTACTCTGGCG 0.542000 39 43 0 0 1 0 0 MED12L 116931 broad.mit.edu 37 3 151129080 151129080 + Silent SNP C C T TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr3:151129080C>T uc003eyp.3 + 38 5949 c.5820C>T c.(5818-5820)ggC>ggT p.G1940G MED12L_uc011bnz.2_Intron NM_053002 NP_443728 Q86YW9 MD12L_HUMAN Homo sapiens mediator complex subunit 12-like (MED12L), mRNA. 1940 Gln-rich. regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent mediator complex NS(1)|breast(3)|central_nervous_system(3)|cervix(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(2)|kidney(9)|large_intestine(27)|lung(50)|ovary(6)|prostate(3)|skin(4)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(1) 128 LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517) TGCCACAGGGCTATACAATGT 0.502000 39 77 0 0 1 0 0 GPR113 165082 broad.mit.edu 37 2 26536378 26536378 + Missense_Mutation SNP T T G TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr2:26536378T>G uc002rhe.4 - 8 1340 c.1340A>C c.(1339-1341)cAc>cCc p.H447P GPR113_uc010yky.1_Missense_Mutation_p.H378P|GPR113_uc002rhb.1_Missense_Mutation_p.H50P|GPR113_uc010eyk.1_Missense_Mutation_p.H248P|GPR113_uc002rhc.1_Missense_Mutation_p.H50P|GPR113_uc002rhd.1_Non-coding_Transcript NM_001145168 NP_001138640 Q8IZF5 GP113_HUMAN Homo sapiens G protein-coupled receptor 113 (GPR113), transcript variant 1, mRNA. 447 neuropeptide signaling pathway integral to membrane|plasma membrane G-protein coupled receptor activity NS(1)|endometrium(1)|kidney(1)|large_intestine(7)|lung(5)|ovary(4)|prostate(2)|skin(1)|stomach(1)|urinary_tract(1) 24 Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215) CTGTGCCACGTGGCCAGCCTT 0.612000 9 23 0 0 1 0 0 B3GALTL 145173 broad.mit.edu 37 13 31848757 31848757 + Missense_Mutation SNP C C A TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr13:31848757C>A uc010aaz.3 + 8 882 c.772C>A c.(772-774)Ccg>Acg p.P258T B3GALTL_uc001utn.4_Non-coding_Transcript NM_194318 NP_919299 Q6Y288 B3GLT_HUMAN Homo sapiens beta 1,3-galactosyltransferase-like (B3GALTL), mRNA. 258 fucose metabolic process endoplasmic reticulum membrane|integral to membrane transferase activity, transferring glycosyl groups breast(1)|cervix(1)|kidney(1)|large_intestine(4)|lung(7)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1) 19 Lung SC(185;0.0257) all cancers(112;0.00436)|Epithelial(112;0.0285)|OV - Ovarian serous cystadenocarcinoma(117;0.0512)|GBM - Glioblastoma multiforme(144;0.184) TTCTTTTCTACCGCTTTGTGT 0.413000 5 131 0 0 1 0 0 MLL5 55904 broad.mit.edu 37 7 104715089 104715089 + Splice_Site SNP G G T TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr7:104715089G>T uc003vcm.3 + 8 1091 c.557_splice c.e8-1 p.D186_splice MLL5_uc010lja.1_Splice_Site_p.D40_splice|MLL5_uc010ljb.1_Splice_Site_p.D186_splice|MLL5_uc003vcl.3_Splice_Site_p.D186_splice|MLL5_uc010ljc.3_Splice_Site_p.D186_splice|MLL5_uc003vco.1_5'Flank|MLL5_uc010ljd.1_5'Flank NM_182931 NP_891847 Q8IZD2 MLL5_HUMAN Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) (MLL5), transcript variant 1, mRNA. 186 DNA methylation|cell cycle arrest|cellular response to retinoic acid|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent MLL5-L complex|nuclear speck enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding NS(1)|breast(5)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(20)|lung(13)|ovary(3)|pancreas(1)|prostate(3)|skin(3)|upper_aerodigestive_tract(2) 63 TTTGTCTGAAGATGGTGATAC 0.333000 66 130 0 0 1 0 0 KLHL4 56062 broad.mit.edu 37 X 86919891 86919891 + Missense_Mutation SNP A A G TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chrX:86919891A>G uc004efa.2 + 9 2235 c.2053A>G c.(2053-2055)Aac>Gac p.N685D KLHL4_uc004efb.2_Missense_Mutation_p.N685D NM_057162 NP_476503 Q9C0H6 KLHL4_HUMAN Homo sapiens kelch-like 4 (Drosophila) (KLHL4), transcript variant 2, mRNA. 685 cytoplasm|microtubule cytoskeleton|nucleolus actin binding NS(1)|biliary_tract(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(19)|lung(29)|ovary(2)|prostate(1)|skin(1) 67 TACTTATTTGAACACAGTTGA 0.378000 36 42 0 0 1 0 0 FBN2 2201 broad.mit.edu 37 5 127674746 127674746 + Silent SNP G G A rs78484531 byFrequency TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr5:127674746G>A uc003kuu.3 - 25 3790 c.3351C>T c.(3349-3351)gaC>gaT p.D1117D FBN2_uc003kuv.2_Silent_p.D1084D NM_001999 NP_001990 P35556 FBN2_HUMAN Homo sapiens fibrillin 2 (FBN2), mRNA. 1117 EGF-like 16; calcium-binding. bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation microfibril calcium ion binding|extracellular matrix structural constituent NS(1)|autonomic_ganglia(1)|biliary_tract(1)|breast(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(37)|liver(1)|lung(89)|ovary(9)|pancreas(2)|prostate(6)|skin(10)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(1) 197 all_cancers(142;0.0216)|Prostate(80;0.0551) KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488) OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146) TCCTGCACTCGTCGATGTCTA 0.458000 45 88 0 0 1 0 0 B4GALNT2 124872 broad.mit.edu 37 17 47247083 47247083 + Missense_Mutation SNP C C T TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr17:47247083C>T uc002ion.2 + 10 1753 c.1694C>T c.(1693-1695)gCc>gTc p.A565V B4GALNT2_uc010wlt.1_Missense_Mutation_p.A479V|B4GALNT2_uc010wlu.1_Missense_Mutation_p.A505V NM_153446 NP_001152860 Q8NHY0 B4GN2_HUMAN Homo sapiens beta-1,4-N-acetyl-galactosaminyl transferase 2 (B4GALNT2), transcript variant 1, mRNA. 565 UDP-N-acetylgalactosamine metabolic process|lipid glycosylation|negative regulation of cell-cell adhesion integral to Golgi membrane acetylgalactosaminyltransferase activity endometrium(3)|large_intestine(6)|liver(2)|lung(8)|ovary(1)|prostate(1)|skin(1)|stomach(1)|urinary_tract(1) 24 all cancers(6;0.000316) CTCCAATGTGCCGCATAAAGG 0.512000 4 56 0 0 1 0 0 PRKG1 5592 broad.mit.edu 37 10 54011361 54011361 + Missense_Mutation SNP C C G TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr10:54011361C>G uc001jjo.3 + 9 1225 c.1108C>G c.(1108-1110)Ctg>Gtg p.L370V PRKG1_uc001jjm.3_Missense_Mutation_p.L355V|PRKG1_uc009xow.2_Missense_Mutation_p.L73V NM_006258 NP_006249 Q13976 KGP1_HUMAN Homo sapiens protein kinase, cGMP-dependent, type I (PRKG1), transcript variant 2, mRNA. 355 Protein kinase. actin cytoskeleton organization|platelet activation|signal transduction cytosol ATP binding|cGMP binding|cGMP-dependent protein kinase activity autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(11)|lung(23)|ovary(1)|prostate(1)|skin(5)|stomach(1)|upper_aerodigestive_tract(2) 53 all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173) all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606) CTTCGCCAACCTGAAGCTGTC 0.413000 27 90 0 0 1 0 0 SLC25A45 283130 broad.mit.edu 37 11 65147382 65147382 + Missense_Mutation SNP G G A TCGA-ET-A3DR-01A-11D-A19J-08 TCGA-ET-A3DR-10A-01D-A19M-08 Untested Somatic Phase_I WXS none Illumina GAIIx 72145918-7810-499b-bbef-00874eb19c49 4edfa5f1-438e-4afb-8fa2-a02941c1bc59 g.chr11:65147382G>A uc001odr.1 - 3 313 c.109C>T c.(109-111)Cgg>Tgg p.R37W SLC25A45_uc009yqi.1_Missense_Mutation_p.R37W|SLC25A45_uc001odq.1_Intron|SLC25A45_uc001ods.1_5'UTR|SLC25A45_uc001odt.1_5'UTR NM_182556 NP_001070709 Q8N413 S2545_HUMAN Homo sapiens solute carrier family 25, member 45 (SLC25A45), transcript variant 1, mRNA. 37 transmembrane transport integral to membrane|mitochondrial inner membrane binding endometrium(2)|kidney(3)|large_intestine(2)|lung(6)|upper_aerodigestive_tract(1) 14 ACGATGCCCCGGTAGGTGGTC 0.627000 24 58 0 0 1 0 0