Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
EPN1	29924	broad.mit.edu	37	19	56206611	56206611	+	Silent	SNP	C	C	T			TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr19:56206611C>T	ENST00000411543.2	+	11	2425	c.1878C>T	c.(1876-1878)ccC>ccT	p.P626P	EPN1_ENST00000085079.7_Silent_p.P514P|EPN1_ENST00000270460.6_Silent_p.P540P	NM_001130071.1	NP_001123543.1	Q9Y6I3	EPN1_HUMAN	epsin 1	540					endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding			endometrium(5)|kidney(1)|large_intestine(2)|lung(8)|skin(1)	17		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		CTGTGCCTCCCGTCCCTGGAG	0.716000													13	39					0	0	1	0	0
ZNF724P	0	broad.mit.edu	37	19	23405874	23405874	+	Silent	SNP	T	T	C			TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr19:23405874T>C	ENST00000418100.1	-	4	1290	c.1173A>G	c.(1171-1173)gaA>gaG	p.E391E																	endometrium(3)|kidney(1)|lung(2)|ovary(2)	8						TGTATGGTTTTTCTCCAGTAT	0.393000													4	33					0	0	1	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58179028	58179028	+	Silent	SNP	T	T	C	rs3732630	by1000genomes	TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr3:58179028T>C	ENST00000483681.1	-	9	1424	c.843A>G	c.(841-843)aaA>aaG	p.K281K	DNASE1L3_ENST00000486455.1_Intron|DNASE1L3_ENST00000318316.3_Intron|DNASE1L3_ENST00000394549.2_Intron			Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3	0					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(4)|lung(6)	12				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		ctAACTCATCTTTCCAGGACA	0.428000													4	31					0	0	1	0	0
SLC22A14	9389	broad.mit.edu	37	3	38357962	38357962	+	Silent	SNP	G	G	A	rs149735987	byFrequency	TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr3:38357962G>A	ENST00000273173.4	+	9	1771	c.1680G>A	c.(1678-1680)ccG>ccA	p.P560P	SLC22A14_ENST00000448498.1_Silent_p.P560P	NM_004803.3	NP_004794.2	Q9Y267	S22AE_HUMAN	solute carrier family 22, member 14	560			P -> R (in dbSNP:rs240033).			integral to plasma membrane	organic cation transmembrane transporter activity			central_nervous_system(3)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(5)|prostate(2)|skin(1)	21				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		CCCTGCTGCCGGAAACGCGAG	0.612000													13	43					0	0	1	0	0
LMAN2L	81562	broad.mit.edu	37	2	97403762	97403762	+	Missense_Mutation	SNP	T	T	A			TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr2:97403762T>A	ENST00000264963.4	-	2	252	c.230A>T	c.(229-231)aAt>aTt	p.N77I	LMAN2L_ENST00000377079.4_Missense_Mutation_p.N77I|LMAN2L_ENST00000534882.1_Intron|LMAN2L_ENST00000426463.2_5'UTR|LMAN2L_ENST00000537039.1_Intron	NM_030805.3	NP_110432.1	Q9H0V9	LMA2L_HUMAN	lectin, mannose-binding 2-like	77	L-type lectin-like.				ER to Golgi vesicle-mediated transport|protein folding|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle|Golgi membrane|integral to membrane	mannose binding|metal ion binding			NS(1)|breast(1)|endometrium(1)|lung(2)|skin(1)|urinary_tract(1)	7						CACCATGGCATTGCCCATCAG	0.488000													10	26					0	0	1	0	0
ZNF730	100129543	broad.mit.edu	37	19	23328792	23328792	+	Missense_Mutation	SNP	A	A	G			TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr19:23328792A>G	ENST00000597761.2	+	4	1145	c.946A>G	c.(946-948)Aaa>Gaa	p.K316E		NM_001277403.1	NP_001264332.1			zinc finger protein 730											endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(7)|pancreas(1)|stomach(2)|urinary_tract(1)	16						CAAATGCGAAAAATGTGGCAA	0.353000													4	19					0	0	1	0	0
P4HA3	283208	broad.mit.edu	37	11	73978243	73978243	+	Nonsense_Mutation	SNP	G	G	A	rs3741132	by1000genomes	TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr11:73978243G>A	ENST00000427714.2	-	13	1706	c.1678C>T	c.(1678-1680)Cag>Tag	p.Q560*	P4HA3_ENST00000331597.4_3'UTR			Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha polypeptide III	0						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			NS(1)|biliary_tract(1)|breast(1)|endometrium(1)|kidney(1)|large_intestine(3)|liver(1)|lung(5)|skin(1)	15	Breast(11;2.31e-05)					TTTGGCTCCTGGCTTCTCTGG	0.562000													4	21					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53069236	53069256	+	In_Frame_Del	DEL	TAGCTGCTACCTCCGGAGCCA	TAGCTGCTACCTCCGGAGCCA	-	rs66529359	by1000genomes	TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr12:53069236_53069256delTAGCTGCTACCTCCGGAGCCA	ENST00000252244.3	-	9	1714_1734	c.1656_1676delTGGCTCCGGAGGTAGCAGCTA	c.(1654-1677)tac>ta	p.YGSGGSSY552del		NM_006121.3	NP_006112.3	P04264	K2C1_HUMAN	keratin 1	552	Gly/Ser-rich.|Tail.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding	p.S557_G563delSSYGSGG(3)		breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(7)|lung(11)|ovary(1)|prostate(7)|skin(3)	39						tccggagccgtagctgctacctccggagccatagctgccac	0.688													14	3	---	---	---	---					
CLIP1	6249	broad.mit.edu	37	12	122812690	122812691	+	Frame_Shift_Ins	INS	-	-	T			TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr12:122812690_122812691insT	ENST00000358808.2	-	16	3173_3174	c.3019_3020insA	c.(3019-3021)ccafs	p.P1007fs	CLIP1_ENST00000545889.1_Frame_Shift_Ins_p.P593fs|CLIP1_ENST00000540338.1_Frame_Shift_Ins_p.P1018fs|CLIP1_ENST00000361654.4_Frame_Shift_Ins_p.P896fs|CLIP1_ENST00000302528.7_Frame_Shift_Ins_p.P1007fs|CLIP1_ENST00000537178.1_Frame_Shift_Ins_p.P972fs	NM_001247997.1|NM_002956.2	NP_001234926.1|NP_002947.1	P30622	CLIP1_HUMAN	CAP-GLY domain containing linker protein 1	1018					mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			NS(1)|breast(5)|endometrium(4)|kidney(5)|large_intestine(16)|liver(1)|lung(21)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	60	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		CTGGTTGTGGCTTGTTTCCATT	0.505													8	210	---	---	---	---					
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	-	G	rs2981599		TCGA-ET-A40R-01A-11D-A23M-08	TCGA-ET-A40R-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa48b79b-4172-4fce-852d-69130744fa7a	e91a247a-8cd1-48a3-8e7e-8a12644402ab	g.chr16:3119304_3119305insG	ENST00000525643.2	+	7	847_848	c.515_516insG	c.(514-516)gaafs	p.E172fs	IL32_ENST00000396890.2_Frame_Shift_Ins_p.E218fs|IL32_ENST00000533097.2_Frame_Shift_Ins_p.E172fs|IL32_ENST00000548246.1_Frame_Shift_Ins_p.E132fs|IL32_ENST00000440815.3_Frame_Shift_Ins_p.E172fs|IL32_ENST00000531965.1_Frame_Shift_Ins_p.E162fs|IL32_ENST00000552664.1_Frame_Shift_Ins_p.E172fs|IL32_ENST00000396887.3_Frame_Shift_Ins_p.E115fs|IL32_ENST00000548476.1_Frame_Shift_Ins_p.E218fs|IL32_ENST00000526464.2_Frame_Shift_Ins_p.E172fs|IL32_ENST00000552936.1_Frame_Shift_Ins_p.E196fs|IL32_ENST00000548652.1_Frame_Shift_Ins_p.E163fs|IL32_ENST00000529550.1_Frame_Shift_Ins_p.E172fs|IL32_ENST00000552356.1_Frame_Shift_Ins_p.E152fs|IL32_ENST00000534507.1_Frame_Shift_Ins_p.E218fs|IL32_ENST00000528163.2_Frame_Shift_Ins_p.E172fs|IL32_ENST00000551513.1_Frame_Shift_Ins_p.E209fs|IL32_ENST00000530538.2_Frame_Shift_Ins_p.E172fs|IL32_ENST00000444393.3_Frame_Shift_Ins_p.E172fs|IL32_ENST00000551122.1_Frame_Shift_Ins_p.E115fs|IL32_ENST00000008180.9_Frame_Shift_Ins_p.E152fs|IL32_ENST00000529699.1_Frame_Shift_Ins_p.E152fs|IL32_ENST00000382213.3_Frame_Shift_Ins_p.E163fs|IL32_ENST00000549213.1_Frame_Shift_Ins_p.E115fs|IL32_ENST00000530890.1_Frame_Shift_Ins_p.E152fs|IL32_ENST00000325568.5_Frame_Shift_Ins_p.E172fs			P24001	IL32_HUMAN	interleukin 32	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			breast(1)|endometrium(1)|large_intestine(3)|lung(6)|ovary(1)|pancreas(1)|skin(1)|urinary_tract(1)	15						CCACGGGGGGACAAGGAGGAGC	0.574													22	296	---	---	---	---