Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val DNAJC27 0 genome.wustl.edu 37 2 25174396 25174396 + Missense_Mutation SNP A A G TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 2 25174396 25174396 A G SNP DNAJC27 ENST00000264711 human ensembl 74_37 -1 known missense c.556 p.C186R 1 superfamily_P-loop_NTPase,smart_Ran_GTPase pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_DnaJ_domain,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_DnaJ_domain,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_Small_GTPase,prints_DnaJ_domain,tigrfam_Small_GTP-bd_dom 0 no_errors 0 0 0 92 0 0 94 27 22.31 182 0 0.00 170 54 24.11 SF3B1 0 genome.wustl.edu 37 2 198273163 198273163 + Silent SNP G G A TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 2 198273163 198273163 G A SNP SF3B1 ENST00000335508 human ensembl 74_37 -1 known silent c.1047 p.S349 1 pfam_SF3b_su1 pfam_SF3b_su1,superfamily_ARM-type_fold 0 no_errors 0 0 0 86 0 0 36 28 43.75 253 0 0.00 129 75 36.76 GTF2I 0 genome.wustl.edu 37 7 74146970 74146970 + Missense_Mutation SNP T T A TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 T T T A T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 7 74146970 74146970 T A SNP GTF2I ENST00000324896 human ensembl 74_37 1 known missense c.1271 p.L424H 1 pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I 0 no_errors 0 0 0 298 0 0 208 142 40.57 122 0 0.00 80 44 35.48 STRIP2 0 genome.wustl.edu 37 7 129098231 129098231 + Missense_Mutation SNP C C A TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 7 129098231 129098231 C A SNP STRIP2 ENST00000249344 human ensembl 74_37 1 known missense c.1214 p.A405E 0.998 NULL pfam_DUF3402,pfam_N1221 0 no_errors 0 0 0 46 0 0 24 17 41.46 126 0 0.00 64 36 35.64 C10orf90 0 genome.wustl.edu 37 10 128149995 128149995 + Missense_Mutation SNP G G A TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 10 128149995 128149995 G A SNP C10orf90 ENST00000544758 human ensembl 74_37 -1 known missense c.1985 p.T662M 0 NULL NULL 0 no_errors rs375267781 G->A 0 90 0 0 51 38 42.7 148 1 0.67 66 45 40.54 RDH5 0 genome.wustl.edu 37 12 56115574 56115574 + Missense_Mutation SNP A A G TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 12 56115574 56115574 A G SNP RDH5 ENST00000257895 human ensembl 74_37 1 known missense c.412 p.M138V 0.003 pfam_DH_sc/Rdtase_SDR,prints_DHB_DH pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH 0 no_errors 0 0 0 141 0 0 69 45 39.47 90 0 0.00 56 23 29.11 ABCC4 0 genome.wustl.edu 37 13 95696021 95696021 + Missense_Mutation SNP T T C TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 13 95696021 95696021 T C SNP ABCC4 ENST00000376887 human ensembl 74_37 -1 known missense c.3650 p.K1217R 0.954 superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM 0 no_errors 0 0 0 54 0 0 39 21 35 176 0 0.00 94 74 44.05 CHD3 0 genome.wustl.edu 37 17 7798460 7798460 + Nonsense_Mutation SNP C C T TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 17 7798460 7798460 C T SNP CHD3 ENST00000330494 human ensembl 74_37 1 known nonsense c.1495 p.R499* 1 pfam_Znf_PHD-finger,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow 0 no_errors 0 0 0 41 0 0 26 16 38.1 180 0 0.00 113 63 35.80 FOXN1 0 genome.wustl.edu 37 17 26851557 26851557 + Missense_Mutation SNP G G A TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 17 26851557 26851557 G A SNP FOXN1 ENST00000226247 human ensembl 74_37 1 known missense c.160 p.D54N 0.242 NULL pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head 0 no_errors rs200888774 G->A 1,0 19 0 0 16 17 51.52 67 0 0.00 43 20 31.25 CLTC 0 genome.wustl.edu 37 17 57743887 57743887 + Missense_Mutation SNP G G C TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 17 57743887 57743887 G C SNP CLTC ENST00000269122 human ensembl 74_37 1 known missense c.1829 p.R610P 1 pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain 0 no_errors 0 0 0 34 0 0 43 14 24.56 292 2 0.68 166 53 23.98 MRPS7 0 genome.wustl.edu 37 17 73258007 73258007 + Missense_Mutation SNP C C G TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 17 73258007 73258007 C G SNP MRPS7 ENST00000245539 human ensembl 74_37 1 known missense c.26 p.A9G 0 NULL pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom 0 no_errors 0 0 0 180 0 0 91 46 33.58 56 0 0.00 18 12 40.00 OR1I1 0 genome.wustl.edu 37 19 15198335 15198335 + Missense_Mutation SNP C C A TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 19 15198335 15198335 C A SNP OR1I1 ENST00000209540 human ensembl 74_37 1 known missense c.459 p.N153K 0 pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn 0 no_errors 0 0 0 35 0 0 12 8 40 155 0 0.00 75 50 40.00 RPL18 0 genome.wustl.edu 37 19 49120073 49120073 + Missense_Mutation SNP C C T TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 19 49120073 49120073 C T SNP RPL18 ENST00000549370 human ensembl 74_37 -1 known missense c.199 p.D67N 1 NULL NULL 0 no_errors 0 0 0 51 0 0 32 20 38.46 157 0 0.00 81 45 35.71 FLNA 0 genome.wustl.edu 37 X 153591113 153591114 + Frame_Shift_Ins INS - - T TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 - - - T - - Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 X 153591113 153591114 0 T INS FLNA ENST00000369850 human ensembl 74_37 -1 known frame_shift_ins c.2320_2319 p.V773fs 1.000:1.000 pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like 0 no_errors 0 0 0 88 0 0 62 18 22.5 77 0 0.00 41 15 26.79 SNORD3A 0 genome.wustl.edu 37 17 19091344 19091344 + RNA DEL G G - TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 G G G - G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 17 19091344 19091344 G 0 DEL SNORD3A ENST00000365494 human ensembl 74_37 1 known rna NULL NULL 1 0 0 0 no_errors 0 0 0 253 0 0 227 26 10.28 89 0 0.00 98 7 6.67 PLXNB2 0 genome.wustl.edu 37 22 50722370 50722371 + In_Frame_Ins INS - - CGG TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 - - - CGG - - Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 22 50722370 50722371 0 CGG INS PLXNB2 ENST00000359337 human ensembl 74_37 -1 known in_frame_ins c.2313_2312 p.772in_frame_insR 1.000:1.000 superfamily_Plexin-like_fold,smart_Plexin-like_fold pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom 0 no_errors 0 0 0 56 0 0 51 13 20.31 18 0 0.00 6 4 40.00 FOXD4L5 0 genome.wustl.edu 37 9 70177486 70177486 + Silent SNP G G A TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 9 70177486 70177486 G A SNP FOXD4L5 ENST00000377420 human ensembl 74_37 -1 known silent c.498 p.F166 1 pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head 0 no_errors rs199726212 G->A 0 20 1 4.76 13 7 35 0 0 0.00 0 0 0.00 NDN 0 genome.wustl.edu 37 15 23932210 23932210 + Missense_Mutation SNP G G A TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 15 23932210 23932210 G A SNP NDN ENST00000331837 human ensembl 74_37 -1 known missense c.155 p.P52L 0 NULL pfam_MAGE,pfscan_MAGE 0 no_errors 0 0 0 12 0 0 10 3 23.08 12 0 0.00 2 0 0.00 RUNX2 0 genome.wustl.edu 37 6 45390446 45390448 + In_Frame_Del DEL CAG CAG - TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 CAG CAG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 6 45390446 45390448 CAG 0 DEL RUNX2 ENST00000352853 human ensembl 74_37 1 known in_frame_del c.379_381 p.Q130in_frame_del 0.995:0.993:0.990 NULL pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt 0 no_errors 0 0 0 77 0 0 50 5 9.09 7 0 0.00 2 0 0.00 ENSG00000258646 0 genome.wustl.edu 37 14 75471420 75471422 + RNA DEL TTG TTG - TCGA-3G-AB0Q-01A-11D-A423-09 TCGA-3G-AB0Q-11A-21D-A426-09 TTG TTG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ef4fa790-c453-4568-bb03-76ae3d5931d4 126fc753-1f18-4013-8285-ed49ed76bc87 14 75471420 75471422 TTG 0 DEL ENSG00000258646 ENST00000554430 human ensembl 74_37 -1 known rna NULL NULL 0.001:0.001:0.000 0 0 0 no_errors 0 0 0 10 0 0 4 2 33.33 13 0 0.00 7 0 0.00