Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val CERKL 0 genome.wustl.edu 37 2 182413585 182413585 + Splice_Site SNP C C T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 2 182413585 182413585 C T SNP CERKL ENST00000339098 human ensembl 74_37 -1 known splice_site c.974-1 e8-1 1 0 0 0 no_errors 0 0 0 55 0 0 24 5 17.24 224 1 0.44 139 18 11.46 ANKMY1 0 genome.wustl.edu 37 2 241463443 241463443 + Missense_Mutation SNP C C T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 2 241463443 241463443 C T SNP ANKMY1 ENST00000272972 human ensembl 74_37 -1 known missense c.1424 p.C475Y 0 superfamily_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND 0 no_errors 0 0 0 53 0 0 26 5 15.15 133 0 0.00 74 16 17.78 NR1I2 0 genome.wustl.edu 37 3 119534575 119534575 + Missense_Mutation SNP C C T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 3 119534575 119534575 C T SNP NR1I2 ENST00000337940 human ensembl 74_37 1 known missense c.1174 p.R392C 1 pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt 0 no_errors 0 0 0 30 0 0 9 3 25 176 0 0.00 111 18 13.95 COL6A5 0 genome.wustl.edu 37 3 130113830 130113830 + Missense_Mutation SNP C C G TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 3 130113830 130113830 C G SNP COL6A5 ENST00000265379 human ensembl 74_37 1 known missense c.3090 p.D1030E 0.868 pfam_VWF_A,smart_VWF_A,pfscan_VWF_A pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A 0 no_errors 0 0 0 70 0 0 47 5 9.62 380 0 0.00 204 26 11.30 GAK 0 genome.wustl.edu 37 4 870324 870324 + Missense_Mutation SNP A A T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 4 870324 870324 A T SNP GAK ENST00000314167 human ensembl 74_37 -1 known missense c.2048 p.F683Y 1 pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain 0 no_errors 0 0 0 42 0 0 22 5 18.52 206 0 0.00 155 28 15.30 OTUD4 0 genome.wustl.edu 37 4 146085314 146085314 + Missense_Mutation SNP G G C TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 4 146085314 146085314 G C SNP OTUD4 ENST00000447906 human ensembl 74_37 -1 known missense c.406 p.P136A 1 pfam_OTU,pfscan_OTU pfam_OTU,pfscan_OTU 0 no_errors 0 0 0 134 0 0 158 16 9.2 464 1 0.22 280 44 13.54 NLN 0 genome.wustl.edu 37 5 65118617 65118617 + Missense_Mutation SNP G G T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 5 65118617 65118617 G T SNP NLN ENST00000380985 human ensembl 74_37 1 known missense c.1989 p.M663I 1 pfam_Pept_M3A_M3B pfam_Pept_M3A_M3B 0 no_errors 0 0 0 79 0 0 53 5 8.62 355 0 0.00 254 13 4.87 DAAM2 0 genome.wustl.edu 37 6 39864707 39864707 + Missense_Mutation SNP C C T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 6 39864707 39864707 C T SNP DAAM2 ENST00000274867 human ensembl 74_37 1 known missense c.2461 p.R821W 1 pfam_FH2_Formin,smart_FH2_Formin pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin 0 no_errors 0 0 0 36 0 0 16 4 20 178 0 0.00 81 17 17.35 HOXA1 0 genome.wustl.edu 37 7 27134902 27134902 + Silent SNP G G A TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 7 27134902 27134902 G A SNP HOXA1 ENST00000343060 human ensembl 74_37 -1 known silent c.630 p.V210 0.997 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom 0 no_errors 0 0 0 50 0 0 38 4 9.52 189 0 0.00 184 23 11.11 SLC13A1 0 genome.wustl.edu 37 7 122768933 122768933 + Missense_Mutation SNP C C T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 7 122768933 122768933 C T SNP SLC13A1 ENST00000194130 human ensembl 74_37 -1 known missense c.1099 p.G367R 0.996 pfam_Na/sul_symport pfam_Na/sul_symport,pfam_Cit_transptr-like_dom 0 no_errors 0 0 0 45 0 0 35 7 16.28 321 0 0.00 258 41 13.71 SYTL2 0 genome.wustl.edu 37 11 85437514 85437514 + Missense_Mutation SNP A A G TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 11 85437514 85437514 A G SNP SYTL2 ENST00000359152 human ensembl 74_37 -1 known missense c.1558 p.S520P 0.479 NULL pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom 0 no_errors 0 0 0 58 0 0 28 7 20 414 0 0.00 215 37 14.68 ANP32BP1 0 genome.wustl.edu 37 15 75614044 75614044 + RNA SNP A A T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 15 75614044 75614044 A T SNP ANP32BP1 ENST00000564205 human ensembl 74_37 -1 known rna NULL NULL 0.73 0 0 0 no_errors 0 0 0 38 1 2.5 48 7 12.73 55 0 0.00 43 2 4.35 CHD2 0 genome.wustl.edu 37 15 93528867 93528867 + Missense_Mutation SNP A A G TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 15 93528867 93528867 A G SNP CHD2 ENST00000557381 human ensembl 74_37 1 putative missense c.3377 p.D1126G 1 NULL pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow 0 no_errors 0 0 0 78 0 0 61 7 10.29 166 0 0.00 164 10 5.71 FAM169B 0 genome.wustl.edu 37 15 99023847 99023847 + Missense_Mutation SNP A A G TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 15 99023847 99023847 A G SNP FAM169B ENST00000332908 human ensembl 74_37 -1 known missense c.166 p.Y56H 1 NULL NULL 0 no_errors 0 0 0 49 0 0 57 5 8.06 218 0 0.00 149 28 15.82 SDK2 0 genome.wustl.edu 37 17 71382583 71382583 + Splice_Site SNP C C A TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 17 71382583 71382583 C A SNP SDK2 ENST00000392650 human ensembl 74_37 -1 known splice_site c.4498+1 e31+1 1 0 0 0 no_errors 0 0 0 97 0 0 55 27 32.93 84 0 0.00 40 23 36.51 SLC16A3 0 genome.wustl.edu 37 17 80195443 80195443 + Missense_Mutation SNP T T A TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 T T T A T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 17 80195443 80195443 T A SNP SLC16A3 ENST00000392339 human ensembl 74_37 1 known missense c.797 p.L266Q 1 pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt 0 no_errors 0 0 0 138 0 0 46 19 29.23 96 0 0.00 45 26 36.62 OR7C2 0 genome.wustl.edu 37 19 15053237 15053237 + Missense_Mutation SNP G G A TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 19 15053237 15053237 G A SNP OR7C2 ENST00000248072 human ensembl 74_37 1 known missense c.937 p.G313R 0 NULL pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn 0 no_errors 0 0 0 27 0 0 26 5 16.13 170 0 0.00 115 12 9.45 TSHZ3 0 genome.wustl.edu 37 19 31768987 31768987 + Missense_Mutation SNP G G T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 19 31768987 31768987 G T SNP TSHZ3 ENST00000240587 human ensembl 74_37 -1 known missense c.1712 p.T571K 0.794 NULL superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2 0 no_errors 0 0 0 47 0 0 34 4 10.53 157 0 0.00 142 31 17.82 SARS2 0 genome.wustl.edu 37 19 39409099 39409099 + Missense_Mutation SNP A A T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 19 39409099 39409099 A T SNP SARS2 ENST00000600042 human ensembl 74_37 -1 known missense c.885 p.D295E 1 pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1 pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1 0 no_errors 0 0 0 51 0 0 31 7 18.42 201 0 0.00 159 21 11.67 ADCK4 0 genome.wustl.edu 37 19 41198227 41198227 + Missense_Mutation SNP C C T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 19 41198227 41198227 C T SNP ADCK4 ENST00000324464 human ensembl 74_37 -1 known missense c.1348 p.A450T 0.978 NULL pfam_UbiB_dom,superfamily_Kinase-like_dom 0 no_errors 0 0 0 130 0 0 72 8 10 136 0 0.00 103 16 13.45 KLK8 0 genome.wustl.edu 37 19 51503886 51503886 + Silent SNP C C T TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 19 51503886 51503886 C T SNP KLK8 ENST00000391806 human ensembl 74_37 -1 known silent c.159 p.S53 0 NULL pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A 0 no_errors 0 0 0 41 0 0 28 6 17.65 205 0 0.00 126 11 8.03 GRM4 0 genome.wustl.edu 37 6 34101191 34101191 + Frame_Shift_Del DEL G G - TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 G G G - G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 6 34101191 34101191 G 0 DEL GRM4 ENST00000374181 human ensembl 74_37 -1 known frame_shift_del c.83 p.P28fs 0.793 prints_GPCR_3_mtglu_rcpt_4 pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B 0 no_errors 0 0 0 62 0 0 42 6 12.5 164 0 0.00 105 20 16.00 ENSG00000196096 0 genome.wustl.edu 37 2 214142631 214142631 + RNA SNP G G C TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 2 214142631 214142631 G C SNP ENSG00000196096 ENST00000360083 human ensembl 74_37 -1 known rna NULL NULL 0 0 0 0 no_errors rs13000409 G->C 0 9 0 0 5 7 58.33 0 0 0.00 0 0 0.00 MUC21 0 genome.wustl.edu 37 6 30954863 30954863 + Missense_Mutation SNP A A G TCGA-5U-AB0E-01A-11D-A423-09 TCGA-5U-AB0E-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 40ef6685-feb5-4e37-97b1-96160aa3aaa7 5b9af8ea-c527-4e80-9c81-402d8c37bf4f 6 30954863 30954863 A G SNP MUC21 ENST00000376296 human ensembl 74_37 1 known missense c.911 p.E304G 0 NULL NULL 0 no_errors rs201896109 A->G 0 60 0 0 51 5 8.93 0 0 0.00 2 0 0.00