Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	394	0	0	328	34	9.39	133	0	0.00	109	11	9.17
NTRK2	0	genome.wustl.edu	37	9	87342744	87342744	+	Silent	SNP	C	C	T			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	9	87342744	87342744	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	1	known	silent	c.1029	p.H343	0.833	pfam_Ig_I-set,prints_Tyr_kin_neurotrophic_rcpt_2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	0	no_errors	rs147059990	C->T	0.9996,0.0003994	61	0	0	59	5	7.81	202	0	0.00	157	7	4.27
C12orf55	0	genome.wustl.edu	37	12	97078944	97078944	+	Missense_Mutation	SNP	G	G	A			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	12	97078944	97078944	G	A	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	1	putative	missense	c.5942	p.S1981N	1	NULL	superfamily_Fibronectin_type3	0	no_errors	0	0	0	93	0	0	76	7	8.43	184	0	0.00	183	29	13.68
RAB11A	0	genome.wustl.edu	37	15	66170291	66170291	+	Missense_Mutation	SNP	C	C	T			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	15	66170291	66170291	C	T	SNP	RAB11A	ENST00000261890	human	ensembl	74_37	1	known	missense	c.428	p.A143V	1	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	57	0	0	52	4	7.14	266	0	0.00	250	16	6.02
KANSL1-AS1	0	genome.wustl.edu	37	17	44270985	44270985	+	RNA	SNP	G	G	A			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	17	44270985	44270985	G	A	SNP	KANSL1-AS1	ENST00000398275	human	ensembl	74_37	1	known	rna	NULL	NULL	0.675	0	0	0	no_errors	rs528572193	G->A	0	8	0	0	5	5	50	17	0	0.00	18	4	18.18
PTPRM	0	genome.wustl.edu	37	18	7888204	7888204	+	Missense_Mutation	SNP	T	T	G			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	18	7888204	7888204	T	G	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	1	known	missense	c.297	p.F99L	1	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	0	no_errors	0	0	0	63	0	0	49	11	18.03	257	0	0.00	218	36	14.17
CLDND2	0	genome.wustl.edu	37	19	51871173	51871173	+	Missense_Mutation	SNP	C	C	T			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	19	51871173	51871173	C	T	SNP	CLDND2	ENST00000291715	human	ensembl	74_37	-1	known	missense	c.277	p.G93S	0.097	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	0	no_errors	0	0	0	22	0	0	22	5	18.52	54	0	0.00	46	7	13.21
PTPRA	0	genome.wustl.edu	37	20	3016331	3016331	+	Missense_Mutation	SNP	G	G	A			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	20	3016331	3016331	G	A	SNP	PTPRA	ENST00000425918	human	ensembl	74_37	1	known	missense	c.2054	p.R685Q	1	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	0	no_errors	0	0	0	61	0	0	35	6	14.63	169	0	0.00	131	11	7.75
SEZ6L	0	genome.wustl.edu	37	22	26693012	26693012	+	Silent	SNP	C	C	T			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	22	26693012	26693012	C	T	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	1	known	silent	c.1128	p.D376	0.263	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	0	no_errors	rs371203903	C->T	0	52	0	0	21	6	22.22	212	0	0.00	173	8	4.42
PCDHB13	0	genome.wustl.edu	37	5	140594606	140594607	+	Frame_Shift_Ins	INS	-	-	A			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	5	140594606	140594607	0	A	INS	PCDHB13	ENST00000341948	human	ensembl	74_37	1	known	frame_shift_ins	c.911_912	p.Q307fs	0.092:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	0	no_errors	0	0	0	79	0	0	59	7	10.61	249	0	0.00	223	11	4.70
OR8B12	0	genome.wustl.edu	37	11	124413131	124413132	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	11	124413131	124413132	AC	0	DEL	OR8B12	ENST00000306842	human	ensembl	74_37	-1	known	frame_shift_del	c.420_419	p.C140fs	0.006:0.002	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	0	no_errors	0	0	0	43	0	0	29	5	14.71	155	0	0.00	151	17	10.12
KRT8	0	genome.wustl.edu	37	12	53295733	53295733	+	Nonsense_Mutation	SNP	G	G	A			TCGA-5U-AB0F-01A-11D-A423-09	TCGA-5U-AB0F-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fee7d1c9-9638-47dd-9ad0-55152ed067ec	fce840fd-9475-496b-80bc-0dd2ca38279f	12	53295733	53295733	G	A	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	nonsense	c.448	p.Q150*	1	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	0	no_errors	0	0	0	33	0	0	24	4	14.29	1	0	0.00	0	0	0.00