Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
GTF2IRD2P1	0	genome.wustl.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G			TCGA-X7-A8D6-01A-11D-A423-09	TCGA-X7-A8D6-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31e0b5b8-7ca3-4450-ac6b-1fa018b28caa	fd880a24-57f9-41e2-a7cd-a633e8956139	7	72663998	72663998	T	G	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	49	0	0	35	7	16.67	15	0	0.00	17	2	10.53
SEH1L	0	genome.wustl.edu	37	18	12986927	12986929	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-X7-A8D6-01A-11D-A423-09	TCGA-X7-A8D6-10A-01D-A426-09	TCC	TCC	TCC	-	TCC	TCC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31e0b5b8-7ca3-4450-ac6b-1fa018b28caa	fd880a24-57f9-41e2-a7cd-a633e8956139	18	12986927	12986929	TCC	0	DEL	SEH1L	ENST00000399892	human	ensembl	74_37	1	known	in_frame_del	c.1137_1139	p.P383in_frame_del	0.997:1.000:1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	0	no_errors	0	0	0	38	0	0	31	3	8.82	68	1	1.45	64	3	4.48
MT-CO2	0	genome.wustl.edu	37	MT	8078	8078	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8D6-01A-11D-A423-09	TCGA-X7-A8D6-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31e0b5b8-7ca3-4450-ac6b-1fa018b28caa	fd880a24-57f9-41e2-a7cd-a633e8956139	MT	8078	8078	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	1	known	missense	c.493	p.V165I	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	0	no_errors	0	0	0	265	0	0	50	21	29.58	11	0	0.00	0	0	0.00
USP17L13	0	genome.wustl.edu	37	4	9212415	9212415	+	Missense_Mutation	SNP	G	G	T			TCGA-X7-A8D6-01A-11D-A423-09	TCGA-X7-A8D6-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31e0b5b8-7ca3-4450-ac6b-1fa018b28caa	fd880a24-57f9-41e2-a7cd-a633e8956139	4	9212415	9212415	G	T	SNP	USP17L13	ENST00000421288	human	ensembl	74_37	1	known	missense	c.33	p.E11D	0.516	NULL	pfam_Peptidase_C19/C67,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19/C67	0	no_errors	0	0	0	42	1	2.27	84	14	14.29	0	0	0.00	0	0	0.00
PCDHA9	0	genome.wustl.edu	37	5	140229925	140229925	+	Silent	SNP	G	G	T			TCGA-X7-A8D6-01A-11D-A423-09	TCGA-X7-A8D6-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31e0b5b8-7ca3-4450-ac6b-1fa018b28caa	fd880a24-57f9-41e2-a7cd-a633e8956139	5	140229925	140229925	G	T	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	1	known	silent	c.1845	p.T615	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	0	no_errors	0	0	0	40	0	0	25	4	13.79	2	0	0.00	1	0	0.00
CDK6	0	genome.wustl.edu	37	7	92462451	92462451	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8D6-01A-11D-A423-09	TCGA-X7-A8D6-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31e0b5b8-7ca3-4450-ac6b-1fa018b28caa	fd880a24-57f9-41e2-a7cd-a633e8956139	7	92462451	92462451	C	T	SNP	CDK6	ENST00000265734	human	ensembl	74_37	-1	known	missense	c.187	p.A63T	1	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	44	0	0	32	4	11.11	20	0	0.00	9	0	0.00
FOXD1	0	genome.wustl.edu	37	5	72744018	72744020	+	In_Frame_Del	DEL	CGC	CGC	-			TCGA-X7-A8D6-01A-11D-A423-09	TCGA-X7-A8D6-10A-01D-A426-09	CGC	CGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31e0b5b8-7ca3-4450-ac6b-1fa018b28caa	fd880a24-57f9-41e2-a7cd-a633e8956139	5	72744018	72744020	CGC	0	DEL	FOXD1	ENST00000499003	human	ensembl	74_37	-1	known	in_frame_del	c.170_168	p.R57in_frame_del	1.000:1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	0	no_errors	0	0	0	39	1	2.5	10	3	23.08	1	0	0.00	3	0	0.00