Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
SLC10A3	0	genome.wustl.edu	37	X	153716218	153716218	+	Silent	SNP	G	G	A			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	X	153716218	153716218	G	A	SNP	SLC10A3	ENST00000263512	human	ensembl	74_37	-1	known	silent	c.1062	p.V354	0.999	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	0	no_errors	0	0	0	78	0	0	38	6	13.64	111	0	0.00	81	12	12.90
ALPP	0	genome.wustl.edu	37	2	233244304	233244304	+	Missense_Mutation	SNP	A	A	G			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	2	233244304	233244304	A	G	SNP	ALPP	ENST00000392027	human	ensembl	74_37	1	known	missense	c.391	p.T131A	0.711	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	0	no_errors	0	0	0	47	0	0	27	6	18.18	54	0	0.00	47	12	20.34
SLC25A26	0	genome.wustl.edu	37	3	66428197	66428197	+	Missense_Mutation	SNP	G	G	C			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	3	66428197	66428197	G	C	SNP	SLC25A26	ENST00000354883	human	ensembl	74_37	1	known	missense	c.791	p.S264T	0.026	pfam_Mitochondrial_sb/sol_carrier,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	0	no_errors	0	0	0	48	0	0	47	4	7.84	176	0	0.00	121	8	6.20
ZDHHC11	0	genome.wustl.edu	37	5	825360	825360	+	Silent	SNP	T	T	C			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	5	825360	825360	T	C	SNP	ZDHHC11	ENST00000283441	human	ensembl	74_37	-1	known	silent	c.942	p.K314	0.002	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	0	no_errors	rs201174878	T->C	0	52	1	1.89	31	3	8.82	101	2	1.92	108	6	5.26
CYFIP2	0	genome.wustl.edu	37	5	156712386	156712386	+	Silent	SNP	C	C	A			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	5	156712386	156712386	C	A	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	1	known	silent	c.15	p.V5	1	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	0	no_errors	0	0	0	42	0	0	15	5	25	124	0	0.00	80	18	18.37
HOXA1	0	genome.wustl.edu	37	7	27135319	27135319	+	Silent	SNP	G	G	A			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	7	27135319	27135319	G	A	SNP	HOXA1	ENST00000343060	human	ensembl	74_37	-1	known	silent	c.213	p.H71	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	0	no_errors	rs2074398	G->A	0	57	0	0	43	6	12.24	54	1	1.82	40	2	4.76
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	253	0	0	260	52	16.61	152	0	0.00	101	27	21.09
PI15	0	genome.wustl.edu	37	8	75737551	75737551	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	8	75737551	75737551	G	A	SNP	PI15	ENST00000260113	human	ensembl	74_37	1	known	missense	c.67	p.V23I	0.907	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	0	no_errors	0	0	0	50	0	0	34	4	10.53	143	0	0.00	128	10	7.25
GRIP1	0	genome.wustl.edu	37	12	66788085	66788085	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	12	66788085	66788085	G	A	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.2032	p.R678C	1	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	0	no_errors	0	0	0	59	0	0	53	12	18.46	232	0	0.00	162	40	19.80
TMCO3	0	genome.wustl.edu	37	13	114203809	114203809	+	Missense_Mutation	SNP	A	A	G			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	13	114203809	114203809	A	G	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	1	known	missense	c.1990	p.I664V	0.044	NULL	pfam_Cation/H_exchanger	0	no_errors	rs142845599	A->C,G	0	23	0	0	4	6	60	40	0	0.00	24	7	22.58
TBL3	0	genome.wustl.edu	37	16	2025390	2025390	+	Missense_Mutation	SNP	G	G	C			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	16	2025390	2025390	G	C	SNP	TBL3	ENST00000568546	human	ensembl	74_37	1	known	missense	c.756	p.Q252H	0.042	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp13,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	0	no_errors	0	0	0	54	0	0	27	3	10	82	1	1.20	72	5	6.49
DNM2	0	genome.wustl.edu	37	19	10886517	10886517	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	19	10886517	10886517	C	T	SNP	DNM2	ENST00000314646	human	ensembl	74_37	1	known	missense	c.524	p.T175M	1	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	0	no_errors	0	0	0	14	0	0	8	3	27.27	105	0	0.00	86	7	7.53
LOC101926911	0	genome.wustl.edu	37	15	91578959	91578960	+	RNA	INS	-	-	A			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	15	91578959	91578960	0	A	INS	LOC101926911	ENST00000557804	human	ensembl	74_37	1	known	rna	NULL	NULL	0.168:0.166	0	0	0	no_errors	0	0	0	10	0	0	4	3	42.86	83	0	0.00	47	2	4.08
INTS4L1	0	genome.wustl.edu	37	7	64649430	64649430	+	RNA	SNP	C	C	T			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	7	64649430	64649430	C	T	SNP	INTS4L1	ENST00000587624	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	rs2671984	C->T	0	105	0	0	50	5	8.93	7	0	0.00	7	0	0.00
GOLGA8EP	0	genome.wustl.edu	37	15	23441742	23441742	+	RNA	SNP	C	C	G			TCGA-X7-A8D9-01A-11D-A423-09	TCGA-X7-A8D9-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df95be86-21fc-498e-8f92-9c86e62e0604	469e5064-6682-489c-a883-ed643b0d74d9	15	23441742	23441742	C	G	SNP	GOLGA8EP	ENST00000526079	human	ensembl	74_37	1	known	rna	NULL	NULL	0.998	0	0	0	no_errors	0	0	0	14	0	0	14	5	26.32	0	0	0.00	0	0	0.00