Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
FTMT	0	genome.wustl.edu	37	5	121187726	121187726	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8DF-01A-11D-A423-09	TCGA-X7-A8DF-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	720ada07-ff74-4090-84e6-25c014e41536	23eae786-93b1-4d55-b2a1-db2a8603e710	5	121187726	121187726	G	A	SNP	FTMT	ENST00000321339	human	ensembl	74_37	1	known	missense	c.68	p.R23H	0	NULL	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	0	no_errors	rs552079349	G->A	0	18	0	0	25	2	7.41	21	0	0.00	30	2	6.25
ERGIC1	0	genome.wustl.edu	37	5	172342020	172342020	+	Missense_Mutation	SNP	C	C	G			TCGA-X7-A8DF-01A-11D-A423-09	TCGA-X7-A8DF-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	720ada07-ff74-4090-84e6-25c014e41536	23eae786-93b1-4d55-b2a1-db2a8603e710	5	172342020	172342020	C	G	SNP	ERGIC1	ENST00000326654	human	ensembl	74_37	1	putative	missense	c.419	p.A140G	0	NULL	NULL	0	no_errors	0	0	0	51	0	0	30	7	18.92	168	0	0.00	126	10	7.35
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-X7-A8DF-01A-11D-A423-09	TCGA-X7-A8DF-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	720ada07-ff74-4090-84e6-25c014e41536	23eae786-93b1-4d55-b2a1-db2a8603e710	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	367	0	0	292	34	10.37	148	0	0.00	124	9	6.77
C12orf10	0	genome.wustl.edu	37	12	53700879	53700879	+	Missense_Mutation	SNP	G	G	T			TCGA-X7-A8DF-01A-11D-A423-09	TCGA-X7-A8DF-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	720ada07-ff74-4090-84e6-25c014e41536	23eae786-93b1-4d55-b2a1-db2a8603e710	12	53700879	53700879	G	T	SNP	C12orf10	ENST00000549488	human	ensembl	74_37	1	putative	missense	c.588	p.L196F	1	pfam_Met-dep_prot_hydro	pfam_Met-dep_prot_hydro	0	no_errors	0	0	0	55	0	0	65	5	7.14	54	0	0.00	39	2	4.88
ATRN	0	genome.wustl.edu	37	20	3451967	3451969	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-X7-A8DF-01A-11D-A423-09	TCGA-X7-A8DF-10A-01D-A426-09	GCT	GCT	GCT	-	GCT	GCT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	720ada07-ff74-4090-84e6-25c014e41536	23eae786-93b1-4d55-b2a1-db2a8603e710	20	3451967	3451969	GCT	0	DEL	ATRN	ENST00000262919	human	ensembl	74_37	1	known	in_frame_del	c.213_215	p.L75in_frame_del	0.487:0.505:0.496	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB_dom,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	0	no_errors	0	0	0	25	0	0	6	2	25	1	0	0.00	10	3	23.08
MRGPRX3	0	genome.wustl.edu	37	11	18159677	18159677	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8DF-01A-11D-A423-09	TCGA-X7-A8DF-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	720ada07-ff74-4090-84e6-25c014e41536	23eae786-93b1-4d55-b2a1-db2a8603e710	11	18159677	18159677	C	A	SNP	MRGPRX3	ENST00000396275	human	ensembl	74_37	1	known	missense	c.928	p.Q310K	0.172	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	43	0	0	34	4	10.53	17	0	0.00	9	0	0.00
RPL12P38	0	genome.wustl.edu	37	17	58511280	58511280	+	RNA	SNP	C	C	A			TCGA-X7-A8DF-01A-11D-A423-09	TCGA-X7-A8DF-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	720ada07-ff74-4090-84e6-25c014e41536	23eae786-93b1-4d55-b2a1-db2a8603e710	17	58511280	58511280	C	A	SNP	RPL12P38	ENST00000588627	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	54	0	0	31	4	11.43	0	0	0.00	0	0	0.00
LYPLA1	0	genome.wustl.edu	37	8	55014358	55014358	+	Frame_Shift_Del	DEL	G	G	-			TCGA-X7-A8DF-01A-11D-A423-09	TCGA-X7-A8DF-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	720ada07-ff74-4090-84e6-25c014e41536	23eae786-93b1-4d55-b2a1-db2a8603e710	8	55014358	55014358	G	0	DEL	LYPLA1	ENST00000316963	human	ensembl	74_37	-1	known	frame_shift_del	c.26	p.P9fs	0.992	NULL	pfam_PLipase/COase/thioEstase,pfam_AB_hydrolase_3	0	no_errors	0	0	0	11	0	0	4	2	33.33	6	0	0.00	6	0	0.00