Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
KIAA2022	0	genome.wustl.edu	37	X	73961372	73961372	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	X	73961372	73961372	C	A	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.3020	p.C1007F	1	NULL	NULL	0	no_errors	0	0	0	38	0	0	49	5	9.26	161	0	0.00	224	29	11.42
EFCAB14	0	genome.wustl.edu	37	1	47144022	47144022	+	RNA	SNP	T	T	C			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	1	47144022	47144022	T	C	SNP	EFCAB14	ENST00000479745	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	0	0	0	no_errors	0	0	0	68	0	0	86	18	17.31	208	0	0.00	305	73	19.21
OBSCN	0	genome.wustl.edu	37	1	228473872	228473872	+	Missense_Mutation	SNP	A	A	G			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	1	228473872	228473872	A	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	1	known	missense	c.9098	p.Y3033C	0.964	smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	0	no_errors	0	0	0	66	0	0	37	8	17.78	111	0	0.00	101	12	10.62
RAPGEF4	0	genome.wustl.edu	37	2	173848262	173848262	+	Missense_Mutation	SNP	A	A	G			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	2	173848262	173848262	A	G	SNP	RAPGEF4	ENST00000397081	human	ensembl	74_37	1	known	missense	c.1043	p.Y348C	1	superfamily_cNMP-bd-like	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	0	no_errors	rs376593491	A->G	0	26	0	0	41	6	12.5	116	0	0.00	158	32	16.41
NUP210P1	0	genome.wustl.edu	37	3	126386168	126386168	+	RNA	SNP	G	G	T			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	3	126386168	126386168	G	T	SNP	NUP210P1	ENST00000357061	human	ensembl	74_37	1	known	rna	NULL	NULL	0.988	0	0	0	no_errors	0	0	0	42	0	0	36	8	18.18	103	0	0.00	149	18	10.78
COL6A6	0	genome.wustl.edu	37	3	130290046	130290046	+	Missense_Mutation	SNP	T	T	C			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	3	130290046	130290046	T	C	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	1	known	missense	c.2786	p.L929P	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	0	no_errors	0	0	0	37	0	0	32	6	15.79	126	0	0.00	156	12	7.10
NDST4	0	genome.wustl.edu	37	4	115760705	115760705	+	Splice_Site	SNP	C	C	T			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	4	115760705	115760705	C	T	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	splice_site	c.2116-1	e10-1	1	0	0	0	no_errors	0	0	0	47	0	0	42	9	17.65	201	0	0.00	265	50	15.87
RNF8	0	genome.wustl.edu	37	6	37339295	37339295	+	Missense_Mutation	SNP	A	A	T			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	6	37339295	37339295	A	T	SNP	RNF8	ENST00000373479	human	ensembl	74_37	1	known	missense	c.983	p.E328V	0.985	pirsf_E3_Ub_ligase_RNF8	pfam_FHA_dom,pfam_Znf_C3HC4_RING-type,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pirsf_E3_Ub_ligase_RNF8,pfscan_FHA_dom,pfscan_Znf_RING	0	no_errors	0	0	0	86	1	1.15	72	6	7.69	156	0	0.00	197	35	15.09
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	288	0	0	275	55	16.67	98	0	0.00	129	21	14.00
SORCS1	0	genome.wustl.edu	37	10	108339194	108339194	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	10	108339194	108339194	C	A	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.3304	p.A1102S	1	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	0	no_errors	0	0	0	20	0	0	21	4	16	84	0	0.00	112	13	10.24
OR4A16	0	genome.wustl.edu	37	11	55111501	55111501	+	Silent	SNP	T	T	C			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	11	55111501	55111501	T	C	SNP	OR4A16	ENST00000314721	human	ensembl	74_37	1	known	silent	c.825	p.I275	0	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	38	0	0	54	19	26.03	143	0	0.00	235	35	12.92
LOC101929735	0	genome.wustl.edu	37	14	22887703	22887703	+	RNA	SNP	C	C	T			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	14	22887703	22887703	C	T	SNP	LOC101929735	ENST00000535351	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	38	0	0	15	7	31.82	118	0	0.00	93	28	23.14
TDRD9	0	genome.wustl.edu	37	14	104488496	104488496	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	14	104488496	104488496	C	T	SNP	TDRD9	ENST00000409874	human	ensembl	74_37	1	known	missense	c.2435	p.A812V	1	NULL	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	0	no_errors	0	0	0	71	0	0	64	14	17.95	154	0	0.00	219	29	11.69
ENSG00000267243	0	genome.wustl.edu	37	19	29213667	29213667	+	RNA	SNP	T	T	A			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	19	29213667	29213667	T	A	SNP	ENSG00000267243	ENST00000590072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	15	0	0	25	11	30.56	99	0	0.00	151	16	9.58
ANKRD19P	0	genome.wustl.edu	37	9	95599312	95599312	+	RNA	SNP	C	C	A			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	9	95599312	95599312	C	A	SNP	ANKRD19P	ENST00000464387	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	36	0	0	21	4	16	6	0	0.00	6	0	0.00
RABL6	0	genome.wustl.edu	37	9	139735102	139735102	+	Missense_Mutation	SNP	G	G	T			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	9	139735102	139735102	G	T	SNP	RABL6	ENST00000357466	human	ensembl	74_37	1	putative	missense	c.1245	p.E415D	0.015	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	0	no_errors	0	0	0	69	0	0	44	4	8.33	7	0	0.00	10	0	0.00
CACNA1A	0	genome.wustl.edu	37	19	13318678	13318678	+	Missense_Mutation	SNP	G	G	C			TCGA-X7-A8M0-01A-11D-A423-09	TCGA-X7-A8M0-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2f14effa-eed5-41dc-a4b3-dd631d3c8632	060218af-90f8-497f-9ff8-8c5978e86dd6	19	13318678	13318678	G	C	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.6970	p.Q2324E	0.497	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	0	no_errors	0	0	0	21	0	0	9	2	18.18	5	0	0.00	0	0	0.00