Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
DDX26B	0	genome.wustl.edu	37	X	134713737	134713737	+	Missense_Mutation	SNP	A	A	G			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	X	134713737	134713737	A	G	SNP	DDX26B	ENST00000370752	human	ensembl	74_37	1	known	missense	c.2033	p.H678R	0.656	NULL	pfscan_VWF_A	0	no_errors	0	0	0	29	0	0	19	7	26.92	68	0	0.00	31	17	35.42
HMCN1	0	genome.wustl.edu	37	1	186052062	186052062	+	Silent	SNP	T	T	C			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	1	186052062	186052062	T	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	1	known	silent	c.8853	p.S2951	1	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	0	no_errors	0	0	0	94	0	0	98	20	16.95	283	0	0.00	247	57	18.75
DYSF	0	genome.wustl.edu	37	2	71738996	71738996	+	Silent	SNP	G	G	A			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	2	71738996	71738996	G	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	1	known	silent	c.402	p.P134	0.01	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	0	no_errors	0	0	0	52	0	0	37	14	26.42	69	0	0.00	71	7	8.86
MUC4	0	genome.wustl.edu	37	3	195507011	195507011	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	3	195507011	195507011	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.11440	p.L3814F	0.781	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	0	no_errors	rs367569617	G->A	0	40	0	0	60	13	16.67	23	0	0.00	28	5	14.71
RWDD4	0	genome.wustl.edu	37	4	184577088	184577088	+	Silent	SNP	A	A	T			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	4	184577088	184577088	A	T	SNP	RWDD4	ENST00000326397	human	ensembl	74_37	-1	known	silent	c.51	p.I17	1	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	0	no_errors	0	0	0	33	0	0	41	15	26.79	120	0	0.00	98	32	24.62
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	266	0	0	317	64	16.8	126	0	0.00	103	27	20.77
PCLO	0	genome.wustl.edu	37	7	82578982	82578982	+	Missense_Mutation	SNP	A	A	T			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	7	82578982	82578982	A	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.10922	p.V3641E	1	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	0	no_errors	0	0	0	75	1	1.3	87	24	21.62	160	0	0.00	157	55	25.82
ATP12A	0	genome.wustl.edu	37	13	25274967	25274967	+	Silent	SNP	C	C	A			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	13	25274967	25274967	C	A	SNP	ATP12A	ENST00000218548	human	ensembl	74_37	1	known	silent	c.1806	p.S602	0.504	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	0	no_errors	0	0	0	41	0	0	52	15	22.39	243	0	0.00	178	51	22.17
MYO1E	0	genome.wustl.edu	37	15	59523988	59523988	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	15	59523988	59523988	G	A	SNP	MYO1E	ENST00000558571	human	ensembl	74_37	-1	known	missense	c.335	p.T112M	0.982	prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,prints_Myosin_head_motor_dom	0	no_errors	0	0	0	54	0	0	48	13	21.31	175	0	0.00	122	48	28.24
TSC2	0	genome.wustl.edu	37	16	2126081	2126081	+	Nonsense_Mutation	SNP	C	C	G			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	16	2126081	2126081	C	G	SNP	TSC2	ENST00000219476	human	ensembl	74_37	1	known	nonsense	c.2652	p.Y884*	1	pfam_Tuberin-type_domain,prints_Tuberin	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	0	no_errors	0	0	0	71	0	0	60	5	7.69	201	0	0.00	170	11	6.08
MYH13	0	genome.wustl.edu	37	17	10248531	10248531	+	Silent	SNP	C	C	T			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	17	10248531	10248531	C	T	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.1572	p.E524	1	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	0	no_errors	0	0	0	85	0	0	82	23	21.9	68	0	0.00	62	24	27.91
IRX6	0	genome.wustl.edu	37	16	55362674	55362676	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	16	55362674	55362676	GAG	0	DEL	IRX6	ENST00000290552	human	ensembl	74_37	1	known	in_frame_del	c.784_786	p.E265in_frame_del	0.987:0.988:0.993	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	0	no_errors	0	0	0	39	0	0	47	4	7.84	61	1	1.61	80	4	4.76
HLA-DRB1	0	genome.wustl.edu	37	6	32551958	32551959	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-X7-A8M1-01A-11D-A423-09	TCGA-X7-A8M1-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205b2fb9-9ae3-4bb5-88a3-572f6d748640	af3ecfe9-d472-4379-8b78-2d057a1867af	6	32551958	32551959	0	TT	INS	HLA-DRB1	ENST00000360004	human	ensembl	74_37	-1	known	frame_shift_ins	c.298_297	p.A99fs	0.000:0.000	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	0	no_errors	rs200320734	C->CTT	0	12	0	0	9	6	40	2	0	0.00	3	0	0.00