Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-ND5	0	genome.wustl.edu	37	MT	12919	12919	+	Missense_Mutation	SNP	T	T	C			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	MT	12919	12919	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	1	known	missense	c.583	p.S195P	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	0	no_errors	0	0	0	9	0	0	7	4	36.36	0	0	0.00	0	2	100.00
NLGN4X	0	genome.wustl.edu	37	X	5821678	5821678	+	Missense_Mutation	SNP	G	G	T			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	X	5821678	5821678	G	T	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.1101	p.D367E	0.839	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	0	no_errors	0	0	0	38	0	0	21	5	19.23	24	0	0.00	19	10	34.48
BCOR	0	genome.wustl.edu	37	X	39932171	39932171	+	Nonsense_Mutation	SNP	G	G	A			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	X	39932171	39932171	G	A	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	nonsense	c.2428	p.R810*	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	0	0	0	29	0	0	26	16	37.21	206	0	0.00	100	67	40.12
CYB5R1	0	genome.wustl.edu	37	1	202931736	202931736	+	Silent	SNP	C	C	T			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	1	202931736	202931736	C	T	SNP	CYB5R1	ENST00000367249	human	ensembl	74_37	-1	known	silent	c.837	p.G279	0.997	pfam_OxRdtase_FAD/NAD-bd,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Phe_hydroxylase	pfam_OxRdtase_FAD/NAD-bd,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Phe_hydroxylase	0	no_errors	0	0	0	36	0	0	46	6	11.54	271	0	0.00	200	17	7.83
ZNF513	0	genome.wustl.edu	37	2	27600982	27600982	+	Silent	SNP	G	G	C			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	2	27600982	27600982	G	C	SNP	ZNF513	ENST00000323703	human	ensembl	74_37	-1	known	silent	c.1056	p.P352	1	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	0	no_errors	0	0	0	59	0	0	60	5	7.69	166	0	0.00	94	12	11.32
SF3B1	0	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	missense	c.2098	p.K700E	1	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	0	no_errors	rs559063155	T->C	0	29	0	0	38	4	9.52	348	0	0.00	262	25	8.71
COL25A1	0	genome.wustl.edu	37	4	109767374	109767374	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	4	109767374	109767374	C	G	SNP	COL25A1	ENST00000399132	human	ensembl	74_37	-1	known	missense	c.1436	p.G479A	1	pfam_Collagen	pfam_Collagen	0	no_errors	0	0	0	140	0	0	201	18	8.22	508	1	0.20	325	24	6.88
PLEKHG4B	0	genome.wustl.edu	37	5	143228	143228	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	5	143228	143228	G	A	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	1	known	missense	c.476	p.G159E	0	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	0	no_errors	0	0	0	37	0	0	20	4	16.67	96	0	0.00	61	7	10.14
SLU7	0	genome.wustl.edu	37	5	159833628	159833628	+	Silent	SNP	G	G	T			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	5	159833628	159833628	G	T	SNP	SLU7	ENST00000297151	human	ensembl	74_37	-1	known	silent	c.1134	p.G378	0.964	pfam_Slu7	pfam_Slu7,superfamily_Znf_CCHC	0	no_errors	0	0	0	62	0	0	76	12	13.64	541	0	0.00	372	56	13.08
SCAND3	0	genome.wustl.edu	37	6	28542861	28542861	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	6	28542861	28542861	C	T	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.1621	p.V541I	0.037	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	0	no_errors	0	0	0	17	0	0	26	3	10.34	319	0	0.00	196	19	8.84
CYP3A43	0	genome.wustl.edu	37	7	99459367	99459367	+	Silent	SNP	G	G	A			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	7	99459367	99459367	G	A	SNP	CYP3A43	ENST00000222382	human	ensembl	74_37	1	known	silent	c.1158	p.V386	0	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	0	no_errors	0	0	0	66	0	0	88	9	9.28	254	0	0.00	192	9	4.48
RMDN1	0	genome.wustl.edu	37	8	87520845	87520845	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	8	87520845	87520845	G	A	SNP	RMDN1	ENST00000406452	human	ensembl	74_37	-1	known	missense	c.5	p.A2V	0.979	NULL	NULL	0	no_errors	0	0	0	21	0	0	22	3	12	39	0	0.00	31	6	16.22
KIF5B	0	genome.wustl.edu	37	10	32329384	32329384	+	Missense_Mutation	SNP	A	A	T			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	10	32329384	32329384	A	T	SNP	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	missense	c.216	p.D72E	1	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	0	no_errors	0	0	0	51	0	0	67	6	8.22	374	1	0.27	283	16	5.35
CHEK1	0	genome.wustl.edu	37	11	125514478	125514478	+	Silent	SNP	A	A	G			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	11	125514478	125514478	A	G	SNP	CHEK1	ENST00000438015	human	ensembl	74_37	1	known	silent	c.1173	p.Q391	0.002	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	86	0	0	72	8	10	333	1	0.30	252	24	8.66
SNX19	0	genome.wustl.edu	37	11	130784293	130784293	+	Silent	SNP	G	G	A			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	11	130784293	130784293	G	A	SNP	SNX19	ENST00000265909	human	ensembl	74_37	-1	known	silent	c.1542	p.A514	1	superfamily_Phox	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	0	no_errors	0	0	0	32	0	0	18	7	28	120	0	0.00	108	8	6.90
SOX1	0	genome.wustl.edu	37	13	112722167	112722167	+	Silent	SNP	G	G	A			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	13	112722167	112722167	G	A	SNP	SOX1	ENST00000330949	human	ensembl	74_37	1	known	silent	c.195	p.Q65	1	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	0	no_errors	0	0	0	56	0	0	57	8	12.31	62	0	0.00	66	7	9.59
C19orf59	0	genome.wustl.edu	37	19	7742553	7742553	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	19	7742553	7742553	C	G	SNP	C19orf59	ENST00000333598	human	ensembl	74_37	1	known	missense	c.125	p.T42S	1	NULL	NULL	0	no_errors	0	0	0	42	0	0	42	6	12.5	384	0	0.00	229	34	12.93
C6orf223	0	genome.wustl.edu	37	6	43970530	43970530	+	Silent	SNP	G	G	A			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	6	43970530	43970530	G	A	SNP	C6orf223	ENST00000336600	human	ensembl	74_37	1	known	silent	c.396	p.A132	0.006	NULL	NULL	0	no_errors	0	0	0	21	0	0	20	4	16.67	0	0	0.00	0	0	0.00
LOC100133091	0	genome.wustl.edu	37	7	76256128	76256129	+	RNA	INS	-	-	GGGG			TCGA-XM-A8RI-01A-12D-A423-09	TCGA-XM-A8RI-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dee5dfb7-2fe4-4407-a450-a0a5a91ab1a0	664d4a71-f24b-41bc-bf97-16644d9ddfc1	7	76256128	76256129	0	GGGG	INS	LOC100133091	ENST00000418663	human	ensembl	74_37	1	known	rna	NULL	NULL	0.008:0.010	0	0	0	no_errors	0	0	0	14	0	0	12	4	25	2	0	0.00	5	0	0.00