Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
AHDC1	0	genome.wustl.edu	37	1	27878653	27878653	+	RNA	SNP	G	G	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	1	27878653	27878653	G	A	SNP	AHDC1	ENST00000487743	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	14	0	0	19	16	45.71	13	0	0.00	20	20	50.00
LPPR4	0	genome.wustl.edu	37	1	99772387	99772387	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	1	99772387	99772387	G	A	SNP	LPPR4	ENST00000370185	human	ensembl	74_37	1	known	missense	c.2113	p.V705I	1	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	0	no_errors	0	0	0	27	0	0	19	14	42.42	60	0	0.00	109	77	41.40
SFT2D2	0	genome.wustl.edu	37	1	168195362	168195362	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	1	168195362	168195362	C	G	SNP	SFT2D2	ENST00000271375	human	ensembl	74_37	1	known	missense	c.45	p.D15E	0.995	NULL	pfam_Vesicle_transpt_Got1/SFT2	0	no_errors	0	0	0	29	0	0	41	12	22.64	10	0	0.00	33	4	10.81
RASAL2	0	genome.wustl.edu	37	1	178421661	178421661	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	1	178421661	178421661	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	1	known	missense	c.1883	p.R628H	1	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	0	no_errors	0	0	0	13	0	0	27	22	44.9	52	0	0.00	147	78	34.67
UGT1A3	0	genome.wustl.edu	37	2	234638522	234638522	+	Silent	SNP	T	T	C			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	2	234638522	234638522	T	C	SNP	UGT1A3	ENST00000482026	human	ensembl	74_37	1	known	silent	c.750	p.S250	0	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	0	no_errors	rs115983652	T->C	0	58	0	0	75	13	14.77	9	0	0.00	50	8	13.79
UGT1A3	0	genome.wustl.edu	37	2	234638547	234638547	+	Missense_Mutation	SNP	G	G	C			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	2	234638547	234638547	G	C	SNP	UGT1A3	ENST00000482026	human	ensembl	74_37	1	known	missense	c.775	p.G259R	0.001	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	0	no_errors	rs149324549	G->C	0	65	0	0	74	13	14.77	12	0	0.00	62	8	11.43
UGT1A3	0	genome.wustl.edu	37	2	234638555	234638555	+	Silent	SNP	T	T	C			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	2	234638555	234638555	T	C	SNP	UGT1A3	ENST00000482026	human	ensembl	74_37	1	known	silent	c.783	p.F261	1	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	0	no_errors	rs138129589	T->C	0	64	0	0	74	14	15.91	12	0	0.00	64	8	11.11
UGT1A3	0	genome.wustl.edu	37	2	234638576	234638576	+	Silent	SNP	A	A	G			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	2	234638576	234638576	A	G	SNP	UGT1A3	ENST00000482026	human	ensembl	74_37	1	known	silent	c.804	p.P268	0.29	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	0	no_errors	rs530125998	A->G	0	61	0	0	68	12	15	13	0	0.00	67	6	8.22
GNL3	0	genome.wustl.edu	37	3	52728247	52728247	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	3	52728247	52728247	A	G	SNP	GNL3	ENST00000418458	human	ensembl	74_37	1	known	missense	c.1606	p.I536V	0	NULL	pfam_Gnl3_N_dom,pfam_GTP_binding_domain,superfamily_P-loop_NTPase	0	no_errors	0	0	0	27	0	0	29	18	38.3	33	0	0.00	45	43	48.31
GRAMD1C	0	genome.wustl.edu	37	3	113658830	113658830	+	Nonsense_Mutation	SNP	G	G	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	3	113658830	113658830	G	T	SNP	GRAMD1C	ENST00000358160	human	ensembl	74_37	1	known	nonsense	c.1789	p.E597*	1	NULL	pfam_GRAM,smart_GRAM	0	no_errors	0	0	0	36	0	0	31	26	45.61	89	0	0.00	175	125	41.67
PARL	0	genome.wustl.edu	37	3	183560151	183560151	+	Missense_Mutation	SNP	C	C	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	3	183560151	183560151	C	A	SNP	PARL	ENST00000317096	human	ensembl	74_37	-1	known	missense	c.692	p.S231I	1	pfam_Peptidase_S54_rhomboid_dom	pfam_Peptidase_S54_rhomboid_dom	0	no_errors	0	0	0	28	0	0	34	5	12.82	5	0	0.00	32	2	5.88
NR3C2	0	genome.wustl.edu	37	4	149075761	149075761	+	Missense_Mutation	SNP	A	A	C			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	4	149075761	149075761	A	C	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	missense	c.2318	p.L773R	1	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	0	no_errors	0	0	0	47	0	0	41	38	48.1	67	1	1.47	141	97	40.42
LRRC16A	0	genome.wustl.edu	37	6	25280024	25280024	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	6	25280024	25280024	A	G	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	1	novel	missense	c.1	p.M1V	1	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	0	no_errors	0	0	0	45	0	0	44	28	38.89	72	0	0.00	156	106	40.46
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	180	0	0	155	148	48.68	33	0	0.00	84	71	45.81
ZNF767	0	genome.wustl.edu	37	7	149318642	149318642	+	RNA	SNP	C	C	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	7	149318642	149318642	C	T	SNP	ZNF767	ENST00000463567	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	0	0	0	no_errors	0	0	0	18	0	0	16	21	56.76	38	0	0.00	58	64	52.46
XKR4	0	genome.wustl.edu	37	8	56270428	56270428	+	Missense_Mutation	SNP	G	G	C			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	8	56270428	56270428	G	C	SNP	XKR4	ENST00000327381	human	ensembl	74_37	1	known	missense	c.997	p.A333P	1	pfam_Transport_prot_XK	pfam_Transport_prot_XK	0	no_errors	0	0	0	31	0	0	27	22	44.9	47	0	0.00	122	79	39.30
POLE3	0	genome.wustl.edu	37	9	116171911	116171911	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	9	116171911	116171911	G	A	SNP	POLE3	ENST00000374169	human	ensembl	74_37	-1	known	missense	c.250	p.P84S	0.988	superfamily_Histone-fold	pfam_CBFA_NFYB_domain,superfamily_Histone-fold	0	no_errors	0	0	0	22	0	0	30	25	45.45	66	0	0.00	156	143	47.83
SPTAN1	0	genome.wustl.edu	37	9	131369929	131369929	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	9	131369929	131369929	G	A	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	1	known	missense	c.4093	p.D1365N	1	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	0	no_errors	0	0	0	26	0	0	32	17	34.69	38	0	0.00	90	66	42.31
HRAS	0	genome.wustl.edu	37	11	534286	534286	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	11	534286	534286	C	G	SNP	HRAS	ENST00000311189	human	ensembl	74_37	-1	known	missense	c.37	p.G13R	1	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	rs104894228	C->A,G,T	0	36	0	0	23	27	54	31	0	0.00	58	37	38.54
FAM160A2	0	genome.wustl.edu	37	11	6233063	6233063	+	Silent	SNP	G	G	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	11	6233063	6233063	G	A	SNP	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	silent	c.2634	p.L878	0.999	NULL	pfam_RetinoicA-induced_16-like	0	no_errors	0	0	0	46	0	0	20	25	55.56	39	0	0.00	77	63	45.00
C1QTNF5	0	genome.wustl.edu	37	11	119210522	119210522	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	11	119210522	119210522	C	T	SNP	C1QTNF5	ENST00000445041	human	ensembl	74_37	-1	known	missense	c.251	p.G84E	1	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	0	no_errors	0	0	0	11	0	0	8	3	27.27	10	0	0.00	9	6	40.00
CACNA1H	0	genome.wustl.edu	37	16	1250488	1250488	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	16	1250488	1250488	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	1	known	missense	c.1036	p.V346M	1	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	0	no_errors	0	0	0	57	0	0	45	41	47.67	51	0	0.00	100	83	45.11
DNAH3	0	genome.wustl.edu	37	16	21065834	21065834	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	16	21065834	21065834	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.3946	p.D1316N	0.001	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	0	no_errors	0	0	0	36	0	0	33	17	34	44	0	0.00	91	37	28.91
ITGAE	0	genome.wustl.edu	37	17	3651341	3651341	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	17	3651341	3651341	C	T	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	missense	c.2030	p.R677Q	0.966	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	0	no_errors	0	0	0	22	0	0	13	17	56.67	15	0	0.00	78	59	43.07
LRRC37A3	0	genome.wustl.edu	37	17	62855863	62855863	+	Silent	SNP	C	C	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	17	62855863	62855863	C	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	silent	c.4401	p.S1467	0	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	0	no_errors	rs369882842	C->T	0.9998,0.0001997	77	0	0	46	53	53.54	11	0	0.00	22	21	48.84
LIN37	0	genome.wustl.edu	37	19	36244105	36244105	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	19	36244105	36244105	G	A	SNP	LIN37	ENST00000301159	human	ensembl	74_37	1	known	missense	c.395	p.R132H	0.003	NULL	NULL	0	no_errors	rs199605769	G->A	0	17	0	0	18	29	61.7	17	0	0.00	33	17	34.00
C22orf34	0	genome.wustl.edu	37	22	49834789	49834789	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	22	49834789	49834789	C	T	SNP	C22orf34	ENST00000414287	human	ensembl	74_37	-1	known	missense	c.128	p.R43H	0	NULL	NULL	0	no_errors	0	0	0	16	0	0	25	23	47.92	31	0	0.00	69	53	43.44
LRIG2	0	genome.wustl.edu	37	1	113667282	113667283	+	RNA	INS	-	-	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	1	113667282	113667283	0	T	INS	LRIG2	ENST00000466161	human	ensembl	74_37	1	known	rna	NULL	NULL	0.029:0.014	0	0	0	no_errors	0	0	0	13	0	0	14	3	17.65	51	1	1.92	178	13	6.81
TENM4	0	genome.wustl.edu	37	11	78600855	78600856	+	Frame_Shift_Ins	INS	-	-	A			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	11	78600855	78600856	0	A	INS	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	frame_shift_ins	c.1059_1058	p.V354fs	0.997:1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	0	no_errors	0	0	0	24	0	0	24	12	33.33	24	0	0.00	70	46	39.66
TUBBP5	0	genome.wustl.edu	37	9	141069468	141069468	+	RNA	SNP	C	C	G			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	9	141069468	141069468	C	G	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	1	known	rna	NULL	NULL	0.006	0	0	0	no_errors	0	0	0	37	1	2.63	40	4	9.09	1	0	0.00	8	0	0.00
ENSG00000176984	0	genome.wustl.edu	37	11	120040750	120040750	+	Missense_Mutation	SNP	G	G	T			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	11	120040750	120040750	G	T	SNP	ENSG00000176984	ENST00000319763	human	ensembl	74_37	1	putative	missense	c.233	p.R78L	0	NULL	NULL	0	no_errors	0	0	0	25	0	0	38	4	9.52	1	0	0.00	5	0	0.00
MXRA5	0	genome.wustl.edu	37	X	3235496	3235496	+	Frame_Shift_Del	DEL	G	G	-			TCGA-XM-AAZ3-01A-11D-A423-09	TCGA-XM-AAZ3-12A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f21af09f-3063-4aa5-9898-97fc8138ce80	68c3e9a2-d94c-4801-b1c2-2e8ca066312b	X	3235496	3235496	G	0	DEL	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	frame_shift_del	c.6226	p.L2076fs	0.009	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	0	no_errors	0	0	0	22	0	0	23	2	8	1	0	0.00	5	0	0.00