Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
IGSF1	0	genome.wustl.edu	37	X	130409533	130409533	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	X	130409533	130409533	G	A	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.3118	p.R1040C	0.987	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	0	no_errors	0	0	0	15	0	0	9	13	59.09	92	0	0.00	38	63	62.38
F8	0	genome.wustl.edu	37	X	154159467	154159467	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	X	154159467	154159467	C	A	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.2598	p.M866I	0.024	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	0	no_errors	0	0	0	21	0	0	2	14	87.5	88	0	0.00	49	100	67.11
NRAS	0	genome.wustl.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	1	115256530	115256530	G	T	SNP	NRAS	ENST00000369535	human	ensembl	74_37	-1	known	missense	c.181	p.Q61K	1	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	rs121913254	G->A,C,T	0	50	0	0	70	34	32.69	186	0	0.00	262	99	27.27
PDE4DIP	0	genome.wustl.edu	37	1	144852464	144852464	+	Silent	SNP	G	G	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	1	144852464	144852464	G	A	SNP	PDE4DIP	ENST00000369354	human	ensembl	74_37	-1	known	silent	c.7035	p.A2345	0.833	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	0	no_errors	0	0	0	284	0	0	257	52	16.77	76	0	0.00	114	27	19.15
SPTA1	0	genome.wustl.edu	37	1	158641928	158641928	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	1	158641928	158641928	C	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.1409	p.R470H	0.779	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	0	no_errors	rs370498187	C->G,T	0.9998,0.0001997,.	53	0	0	36	20	35.71	187	1	0.53	179	83	31.68
OR14A16	0	genome.wustl.edu	37	1	247978147	247978147	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	1	247978147	247978147	C	A	SNP	OR14A16	ENST00000357627	human	ensembl	74_37	-1	known	missense	c.885	p.K295N	0.091	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	77	0	0	74	54	41.86	187	0	0.00	190	97	33.80
ALMS1	0	genome.wustl.edu	37	2	73680585	73680585	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	2	73680585	73680585	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	1	known	missense	c.6928	p.V2310I	0.001	NULL	NULL	0	no_errors	0	0	0	26	0	0	39	19	32.76	173	0	0.00	175	106	37.72
SETD5	0	genome.wustl.edu	37	3	9506447	9506447	+	RNA	SNP	T	T	C			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	3	9506447	9506447	T	C	SNP	SETD5	ENST00000478961	human	ensembl	74_37	1	known	rna	NULL	NULL	0.486	0	0	0	no_errors	0	0	0	48	0	0	53	19	26.03	196	0	0.00	214	90	29.51
ZBBX	0	genome.wustl.edu	37	3	167045798	167045798	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	3	167045798	167045798	A	G	SNP	ZBBX	ENST00000307529	human	ensembl	74_37	-1	known	missense	c.794	p.V265A	0.002	NULL	pfam_Znf_B-box	0	no_errors	rs191259737	A->G	0.9998,0.0001997	39	0	0	69	19	21.59	146	0	0.00	195	89	30.80
BMPR1B	0	genome.wustl.edu	37	4	96035936	96035936	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	4	96035936	96035936	G	T	SNP	BMPR1B	ENST00000440890	human	ensembl	74_37	1	known	missense	c.299	p.G100V	0.996	pfam_Activin_rcpt	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	0	no_errors	0	0	0	85	0	0	59	42	41.58	181	0	0.00	251	81	24.32
CTNND2	0	genome.wustl.edu	37	5	11111062	11111062	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	5	11111062	11111062	C	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.2371	p.D791Y	1	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	0	no_errors	0	0	0	32	0	0	25	12	32.43	100	0	0.00	93	45	32.61
TRIO	0	genome.wustl.edu	37	5	14389437	14389437	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	5	14389437	14389437	C	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	1	known	missense	c.3988	p.P1330T	1	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	0	no_errors	0	0	0	51	0	0	46	20	30.3	274	0	0.00	252	112	30.77
BRD2	0	genome.wustl.edu	37	6	32943248	32943248	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	6	32943248	32943248	T	A	SNP	BRD2	ENST00000395289	human	ensembl	74_37	1	known	missense	c.421	p.C141S	1	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	0	no_errors	0	0	0	85	0	0	103	40	27.97	214	0	0.00	268	137	33.83
GTF2IRD2P1	0	genome.wustl.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	7	72663998	72663998	T	G	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	15	0	0	25	4	13.79	12	0	0.00	36	5	12.20
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	261	0	0	342	171	33.33	115	0	0.00	126	68	35.05
FRA10AC1	0	genome.wustl.edu	37	10	95429586	95429586	+	Silent	SNP	T	T	C			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	10	95429586	95429586	T	C	SNP	FRA10AC1	ENST00000359204	human	ensembl	74_37	-1	known	silent	c.945	p.L315	0.973	NULL	pfam_Folate-sensitive_fs_Fra10Ac1	0	no_errors	0	0	0	93	0	0	106	38	26.21	126	0	0.00	160	74	31.62
PTDSS2	0	genome.wustl.edu	37	11	489643	489643	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	11	489643	489643	C	T	SNP	PTDSS2	ENST00000308020	human	ensembl	74_37	1	known	missense	c.1025	p.P342L	1	pfam_PSS	pfam_PSS	0	no_errors	rs191633129	C->T	0.9998,0.0001997	46	0	0	25	16	39.02	135	0	0.00	137	57	29.08
SLC39A13	0	genome.wustl.edu	37	11	47435002	47435002	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	11	47435002	47435002	T	C	SNP	SLC39A13	ENST00000362021	human	ensembl	74_37	1	known	missense	c.589	p.C197R	0.329	pfam_ZIP	pfam_ZIP	0	no_errors	0	0	0	82	0	0	40	21	34.43	39	0	0.00	43	9	17.31
KIRREL3	0	genome.wustl.edu	37	11	126316678	126316678	+	Silent	SNP	G	G	T			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	11	126316678	126316678	G	T	SNP	KIRREL3	ENST00000525144	human	ensembl	74_37	-1	known	silent	c.1101	p.V367	0.996	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	0	no_errors	0	0	0	32	0	0	21	11	34.38	35	0	0.00	32	11	25.58
TBK1	0	genome.wustl.edu	37	12	64858242	64858242	+	Silent	SNP	G	G	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	12	64858242	64858242	G	A	SNP	TBK1	ENST00000331710	human	ensembl	74_37	1	known	silent	c.357	p.V119	1	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	57	0	0	64	29	30.85	215	0	0.00	273	96	26.02
CLIP1	0	genome.wustl.edu	37	12	122861982	122861982	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	12	122861982	122861982	G	A	SNP	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	missense	c.611	p.S204L	1	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	0	no_errors	0	0	0	92	0	0	61	23	27.38	207	1	0.48	211	86	28.86
PPP4R4	0	genome.wustl.edu	37	14	94707027	94707027	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	14	94707027	94707027	A	G	SNP	PPP4R4	ENST00000304338	human	ensembl	74_37	1	known	missense	c.871	p.I291V	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	0	no_errors	0	0	0	39	0	0	48	20	29.41	136	0	0.00	187	91	32.62
SDK2	0	genome.wustl.edu	37	17	71394219	71394219	+	Silent	SNP	C	C	T			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	17	71394219	71394219	C	T	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	silent	c.3309	p.V1103	1	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	0	no_errors	0	0	0	89	1	1.11	81	28	25.69	45	0	0.00	47	19	28.79
ZNF519	0	genome.wustl.edu	37	18	14106162	14106162	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	18	14106162	14106162	T	C	SNP	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	missense	c.377	p.K126R	0	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	33	0	0	63	31	32.98	172	1	0.58	232	109	31.96
MYO9B	0	genome.wustl.edu	37	19	17295734	17295734	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	19	17295734	17295734	A	G	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	1	known	missense	c.2434	p.T812A	1	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	0	no_errors	0	0	0	39	0	0	25	6	19.35	127	0	0.00	117	59	33.15
TPTE	0	genome.wustl.edu	37	21	10910352	10910352	+	Silent	SNP	G	G	A			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	21	10910352	10910352	G	A	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	silent	c.1404	p.D468	0	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	0	no_errors	rs141834444	G->A	0	99	0	0	143	27	15.79	116	0	0.00	219	26	10.57
C11orf95	0	genome.wustl.edu	37	11	63533335	63533337	+	RNA	DEL	TCC	TCC	-			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	TCC	TCC	TCC	-	TCC	TCC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	11	63533335	63533337	TCC	0	DEL	C11orf95	ENST00000338498	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.630:0.736:0.723	0	0	0	no_errors	0	0	0	24	0	0	24	2	7.69	68	1	1.45	107	5	4.46
KIAA0430	0	genome.wustl.edu	37	16	15696492	15696493	+	Frame_Shift_Ins	INS	-	-	G			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	16	15696492	15696493	0	G	INS	KIAA0430	ENST00000344181	human	ensembl	74_37	-1	known	frame_shift_ins	c.3327_3326	p.P1110fs	0.001:0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	0	no_errors	rs61282123	A->AG,AGGCAGAGAGGAAAGAAGGA,AGGGAGGCAGAGAGGAAAGAAGGA	0	18	0	0	47	7	12.96	48	0	0.00	115	6	4.96
KIAA0430	0	genome.wustl.edu	37	16	15696497	15696498	+	Frame_Shift_Ins	INS	-	-	C			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	16	15696497	15696498	0	C	INS	KIAA0430	ENST00000344181	human	ensembl	74_37	-1	known	frame_shift_ins	c.3322_3321	p.P1107fs	0.001:0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	0	no_errors	rs370453498	G->GC	0	19	0	0	40	7	14.89	55	0	0.00	118	6	4.84
HMGB1P5	0	genome.wustl.edu	37	3	22423465	22423465	+	RNA	SNP	G	G	T			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	3	22423465	22423465	G	T	SNP	HMGB1P5	ENST00000451497	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	47	0	0	76	6	7.32	0	0	0.00	0	0	0.00
FNBP4	0	genome.wustl.edu	37	11	47744589	47744591	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	11	47744589	47744591	GGA	0	DEL	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	in_frame_del	c.2744_2742	p.P918in_frame_del	0.925:0.888:0.174	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	0	no_errors	0	0	0	50	0	0	35	5	12.5	4	0	0.00	4	0	0.00
ATRN	0	genome.wustl.edu	37	20	3451967	3451969	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-XU-A92O-01A-11D-A423-09	TCGA-XU-A92O-10A-01D-A426-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b709c45-4614-4f0d-9755-8aa7b4fd607b	823164d7-42e4-47d7-9f02-71de862ee763	20	3451967	3451969	GCT	0	DEL	ATRN	ENST00000262919	human	ensembl	74_37	1	known	in_frame_del	c.213_215	p.L75in_frame_del	0.487:0.505:0.496	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB_dom,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	0	no_errors	0	0	0	10	0	0	4	2	33.33	3	0	0.00	6	0	0.00