Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
TRO	0	genome.wustl.edu	37	X	54956354	54956354	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	X	54956354	54956354	A	G	SNP	TRO	ENST00000173898	human	ensembl	74_37	1	known	missense	c.3197	p.N1066S	0	NULL	pfam_MAGE,pfscan_MAGE	0	no_errors	0	0	0	22	0	0	11	10	47.62	29	0	0.00	23	27	54.00
RGAG4	0	genome.wustl.edu	37	X	71351032	71351032	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	X	71351032	71351032	G	C	SNP	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	missense	c.359	p.P120R	0.001	NULL	pfam_Retrotrans_gag_dom	0	no_errors	0	0	0	24	0	0	6	11	64.71	16	0	0.00	12	23	65.71
AIFM1	0	genome.wustl.edu	37	X	129270037	129270037	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	X	129270037	129270037	G	A	SNP	AIFM1	ENST00000287295	human	ensembl	74_37	-1	known	missense	c.1288	p.R430C	1	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase	0	no_errors	0	0	0	43	0	0	28	32	53.33	137	1	0.72	69	76	52.41
HES3	0	genome.wustl.edu	37	1	6305563	6305563	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	1	6305563	6305563	A	G	SNP	HES3	ENST00000377898	human	ensembl	74_37	1	known	missense	c.557	p.N186S	0	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	0	no_errors	0	0	0	65	0	0	42	23	35.38	97	0	0.00	67	34	33.66
LDLRAP1	0	genome.wustl.edu	37	1	25881384	25881384	+	Missense_Mutation	SNP	A	A	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	1	25881384	25881384	A	T	SNP	LDLRAP1	ENST00000374338	human	ensembl	74_37	1	known	missense	c.265	p.T89S	1	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pfscan_PTB/PI_dom	0	no_errors	0	0	0	48	0	0	18	17	48.57	115	0	0.00	50	34	40.48
FGGY	0	genome.wustl.edu	37	1	59787274	59787274	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	1	59787274	59787274	G	T	SNP	FGGY	ENST00000303721	human	ensembl	74_37	1	known	missense	c.53	p.G18V	1	pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	0	no_errors	0	0	0	45	0	0	39	34	46.58	130	0	0.00	113	62	35.43
OVGP1	0	genome.wustl.edu	37	1	111968033	111968033	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	1	111968033	111968033	T	A	SNP	OVGP1	ENST00000369732	human	ensembl	74_37	-1	known	missense	c.289	p.I97F	0.997	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	0	no_errors	0	0	0	60	0	0	27	20	42.55	191	1	0.52	95	74	43.79
RPRD2	0	genome.wustl.edu	37	1	150445793	150445793	+	Missense_Mutation	SNP	T	T	G			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	1	150445793	150445793	T	G	SNP	RPRD2	ENST00000369068	human	ensembl	74_37	1	known	missense	c.4369	p.F1457V	1	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_CID_dom	0	no_errors	0	0	0	41	0	0	21	15	41.67	235	0	0.00	128	77	37.56
MYO7B	0	genome.wustl.edu	37	2	128384562	128384562	+	Nonsense_Mutation	SNP	C	C	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	2	128384562	128384562	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	1	known	nonsense	c.4150	p.Q1384*	0.24	smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	0	no_errors	0	0	0	56	1	1.75	21	18	45	109	0	0.00	53	52	49.52
SLMAP	0	genome.wustl.edu	37	3	57843842	57843842	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	3	57843842	57843842	T	C	SNP	SLMAP	ENST00000428312	human	ensembl	74_37	1	known	missense	c.643	p.S215P	1	NULL	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	0	no_errors	0	0	0	23	0	0	32	26	44.83	175	0	0.00	157	111	41.42
C3orf72	0	genome.wustl.edu	37	3	138668430	138668430	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	3	138668430	138668430	C	T	SNP	C3orf72	ENST00000383165	human	ensembl	74_37	1	known	missense	c.169	p.P57S	0.017	NULL	NULL	0	no_errors	0	0	0	30	0	0	27	23	46	101	0	0.00	69	56	44.80
ZNF718	0	genome.wustl.edu	37	4	124494	124494	+	RNA	SNP	G	G	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	4	124494	124494	G	A	SNP	ZNF718	ENST00000510175	human	ensembl	74_37	1	known	rna	NULL	NULL	0.006	0	0	0	no_errors	0	0	0	45	0	0	37	30	44.78	57	0	0.00	34	25	42.37
ENAM	0	genome.wustl.edu	37	4	71508185	71508185	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	4	71508185	71508185	C	A	SNP	ENAM	ENST00000396073	human	ensembl	74_37	1	known	missense	c.1042	p.P348T	0.835	NULL	NULL	0	no_errors	0	0	0	39	0	0	33	15	31.25	173	1	0.57	112	97	46.41
LIFR	0	genome.wustl.edu	37	5	38528850	38528850	+	Missense_Mutation	SNP	A	A	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	5	38528850	38528850	A	T	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.235	p.Y79N	0.804	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	0	no_errors	0	0	0	35	0	0	26	25	49.02	185	0	0.00	129	115	47.13
FKBPL	0	genome.wustl.edu	37	6	32096724	32096724	+	Silent	SNP	C	C	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	6	32096724	32096724	C	T	SNP	FKBPL	ENST00000375156	human	ensembl	74_37	-1	known	silent	c.834	p.V278	0.939	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	0	no_errors	0	0	0	27	0	0	22	18	45	125	0	0.00	54	64	54.24
DNAH8	0	genome.wustl.edu	37	6	38851748	38851748	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	6	38851748	38851748	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	1	known	missense	c.7582	p.P2528S	1	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	0	no_errors	0	0	0	96	0	0	68	38	35.85	173	1	0.57	122	81	39.90
MAP3K4	0	genome.wustl.edu	37	6	161533727	161533727	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	6	161533727	161533727	G	A	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	1	known	missense	c.4547	p.R1516H	0.183	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	43	0	0	32	28	46.67	114	0	0.00	80	58	42.03
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	221	0	0	147	150	50.51	100	0	0.00	66	48	41.74
ENSG00000226668	0	genome.wustl.edu	37	9	95646810	95646810	+	RNA	SNP	G	G	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	9	95646810	95646810	G	A	SNP	ENSG00000226668	ENST00000446878	human	ensembl	74_37	1	putative	rna	NULL	NULL	0.003	0	0	0	no_errors	0	0	0	128	0	0	92	83	47.43	67	0	0.00	34	29	46.03
CUBN	0	genome.wustl.edu	37	10	17085825	17085825	+	Splice_Site	SNP	C	C	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	10	17085825	17085825	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	splice_site	c.3829+1	e26+1	1	0	0	0	no_errors	0	0	0	72	0	0	29	24	45.28	148	0	0.00	78	55	41.35
HRAS	0	genome.wustl.edu	37	11	534285	534285	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	11	534285	534285	C	A	SNP	HRAS	ENST00000311189	human	ensembl	74_37	-1	known	missense	c.38	p.G13V	1	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	rs104894226	C->A,G,T	0	37	0	0	18	16	47.06	86	0	0.00	27	40	59.70
PPM1E	0	genome.wustl.edu	37	17	57057844	57057844	+	Nonsense_Mutation	SNP	C	C	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	17	57057844	57057844	C	T	SNP	PPM1E	ENST00000308249	human	ensembl	74_37	1	known	nonsense	c.1720	p.Q574*	0.996	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	0	no_errors	0	0	0	14	0	0	12	8	40	191	0	0.00	124	95	43.38
SCGB2B2	0	genome.wustl.edu	37	19	35085134	35085134	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	19	35085134	35085134	C	A	SNP	SCGB2B2	ENST00000379204	human	ensembl	74_37	-1	known	missense	c.192	p.Q64H	0.215	pfam_Secretoglobin,pfam_Allergen_Fel_d_1_chain2,superfamily_Secretoglobin	pfam_Secretoglobin,pfam_Allergen_Fel_d_1_chain2,superfamily_Secretoglobin	0	no_errors	0	0	0	41	0	0	27	25	48.08	57	0	0.00	40	29	42.03
GYS1	0	genome.wustl.edu	37	19	49472822	49472822	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	19	49472822	49472822	G	C	SNP	GYS1	ENST00000323798	human	ensembl	74_37	-1	known	missense	c.1937	p.P646R	1	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	0	no_errors	0	0	0	8	0	0	4	7	63.64	60	0	0.00	14	32	69.57
MYH14	0	genome.wustl.edu	37	19	50753918	50753918	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	19	50753918	50753918	C	A	SNP	MYH14	ENST00000262269	human	ensembl	74_37	1	known	missense	c.1803	p.D601E	1	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	0	no_errors	0	0	0	76	0	0	29	43	59.72	76	0	0.00	45	42	48.28
GTSF1L	0	genome.wustl.edu	37	20	42355134	42355134	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	20	42355134	42355134	G	C	SNP	GTSF1L	ENST00000373003	human	ensembl	74_37	-1	known	missense	c.201	p.S67R	0.557	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	0	no_errors	0	0	0	42	0	0	12	23	65.71	98	0	0.00	42	38	46.91
PPP1R42	0	genome.wustl.edu	37	8	67926672	67926673	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	8	67926672	67926673	TT	0	DEL	PPP1R42	ENST00000522909	human	ensembl	74_37	-1	known	frame_shift_del	c.285_284	p.K95fs	1.000:1.000	NULL	pfam_Leu-rich_rpt	0	no_errors	0	0	0	64	0	0	79	38	32.48	180	0	0.00	116	123	51.46
PTPN6	0	genome.wustl.edu	37	12	7055845	7055845	+	RNA	DEL	C	C	-			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	12	7055845	7055845	C	0	DEL	PTPN6	ENST00000534900	human	ensembl	74_37	1	known	rna	NULL	NULL	0.244	0	0	0	no_errors	0	0	0	145	0	0	120	58	32.58	44	0	0.00	24	25	51.02
SREBF2	0	genome.wustl.edu	37	22	42262949	42262951	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	GCA	GCA	GCA	-	GCA	GCA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	22	42262949	42262951	GCA	0	DEL	SREBF2	ENST00000361204	human	ensembl	74_37	1	known	in_frame_del	c.203_205	p.S72in_frame_del	0.037:0.043:0.048	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	0	no_errors	rs143615881	GGCA->G	0	31	0	0	29	4	12.12	71	0	0.00	52	3	5.45
UNC93B1	0	genome.wustl.edu	37	11	67759316	67759316	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	11	67759316	67759316	C	T	SNP	UNC93B1	ENST00000227471	human	ensembl	74_37	-1	known	missense	c.1492	p.V498M	0.997	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	0	no_errors	rs4014596	C->T	0	27	0	0	23	5	17.86	0	0	0.00	0	0	0.00
SPN	0	genome.wustl.edu	37	16	29675931	29675931	+	Silent	SNP	C	C	T			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	16	29675931	29675931	C	T	SNP	SPN	ENST00000360121	human	ensembl	74_37	1	known	silent	c.882	p.G294	0.084	NULL	NULL	0	no_errors	0	0	0	44	0	0	30	3	9.09	17	0	0.00	6	0	0.00
ENSG00000261646	0	genome.wustl.edu	37	4	174389308	174389309	+	RNA	DEL	TA	TA	-			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	4	174389308	174389309	TA	0	DEL	ENSG00000261646	ENST00000563631	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026:0.026	0	0	0	no_errors	0	0	0	18	0	0	16	11	40.74	0	0	0.00	0	0	0.00
ENKD1	0	genome.wustl.edu	37	16	67700305	67700305	+	Frame_Shift_Del	DEL	G	G	-			TCGA-XU-A92T-01A-11D-A423-09	TCGA-XU-A92T-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e80e05f1-3c9c-4265-8f4b-661a04bca0b4	f269fcbe-be4a-4324-b0b0-f6eee25c5a9f	16	67700305	67700305	G	0	DEL	ENKD1	ENST00000243878	human	ensembl	74_37	-1	known	frame_shift_del	c.41	p.P14fs	1	NULL	NULL	0	no_errors	0	0	0	10	0	0	4	2	33.33	14	0	0.00	8	0	0.00