Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MAEL	0	genome.wustl.edu	37	1	166960676	166960676	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	1	166960676	166960676	C	T	SNP	MAEL	ENST00000367872	human	ensembl	74_37	1	known	missense	c.287	p.P96L	1	pfam_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_CH-domain	0	no_errors	0	0	0	77	0	0	119	9	7.03	225	0	0.00	223	15	6.28
HLA-DRB1	0	genome.wustl.edu	37	6	32557449	32557449	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	6	32557449	32557449	G	A	SNP	HLA-DRB1	ENST00000360004	human	ensembl	74_37	-1	known	missense	c.71	p.S24F	0.003	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	0	no_errors	rs187619904	G->A	0	62	1	1.59	97	16	14.16	15	0	0.00	8	4	33.33
TEAD3	0	genome.wustl.edu	37	6	35444152	35444152	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	6	35444152	35444152	C	T	SNP	TEAD3	ENST00000402886	human	ensembl	74_37	-1	novel	missense	c.473	p.R158H	1	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,pirsf_TEF	0	no_errors	rs201570534	C->T	0.9996,0.0003994	52	1	1.89	26	4	13.33	58	0	0.00	40	2	4.65
RGS3	0	genome.wustl.edu	37	9	116226116	116226116	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	9	116226116	116226116	A	G	SNP	RGS3	ENST00000317613	human	ensembl	74_37	1	known	missense	c.34	p.S12G	1	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,pfscan_C2_dom,pfscan_PDZ	0	no_errors	0	0	0	33	0	0	39	4	9.3	67	1	1.47	45	7	13.46
KCNC1	0	genome.wustl.edu	37	11	17794040	17794040	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	11	17794040	17794040	G	A	SNP	KCNC1	ENST00000265969	human	ensembl	74_37	1	known	missense	c.1399	p.G467R	1	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	0	no_errors	0	0	0	29	0	0	31	5	13.89	165	1	0.60	157	7	4.27
LMO7	0	genome.wustl.edu	37	13	76335145	76335145	+	Silent	SNP	A	A	G			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	13	76335145	76335145	A	G	SNP	LMO7	ENST00000357063	human	ensembl	74_37	1	known	silent	c.444	p.L148	0.99	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_SM22_calponin	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	0	no_errors	0	0	0	32	0	0	41	4	8.89	166	1	0.60	203	17	7.73
SPTBN5	0	genome.wustl.edu	37	15	42167711	42167711	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	15	42167711	42167711	C	T	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.4232	p.R1411H	0.006	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	0	no_errors	rs181128984	C->A,T	0.9998,0.0001997,.	32	0	0	22	5	18.52	101	0	0.00	89	5	5.32
TEFM	0	genome.wustl.edu	37	17	29226104	29226104	+	RNA	SNP	C	C	A			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	17	29226104	29226104	C	A	SNP	TEFM	ENST00000579183	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.371	0	0	0	no_errors	0	0	0	57	0	0	63	6	8.7	287	2	0.69	302	24	7.36
PREX1	0	genome.wustl.edu	37	20	47324938	47324938	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	20	47324938	47324938	C	T	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.643	p.G215S	0.081	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	0	no_errors	0	0	0	57	0	0	48	4	7.69	180	1	0.55	141	19	11.88
MT-ND6	0	genome.wustl.edu	37	MT	14561	14561	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	MT	14561	14561	A	G	SNP	MT-ND6	ENST00000361681	human	ensembl	74_37	-1	known	missense	c.113	p.V38A	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	0	no_errors	0	0	0	145	0	0	518	275	34.63	0	0	0.00	0	0	0.00
ENSG00000230615	0	genome.wustl.edu	37	1	44569968	44569968	+	RNA	SNP	T	T	G			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	1	44569968	44569968	T	G	SNP	ENSG00000230615	ENST00000434244	human	ensembl	74_37	1	known	rna	NULL	NULL	0.999	0	0	0	no_errors	0	0	0	19	0	0	16	6	27.27	0	0	0.00	0	0	0.00
ENSG00000230615	0	genome.wustl.edu	37	1	44569970	44569970	+	RNA	SNP	A	A	C			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	1	44569970	44569970	A	C	SNP	ENSG00000230615	ENST00000434244	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	19	1	5	16	7	30.43	0	0	0.00	0	0	0.00
ENSG00000267207	0	genome.wustl.edu	37	17	59147477	59147477	+	RNA	SNP	C	C	T			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	17	59147477	59147477	C	T	SNP	ENSG00000267207	ENST00000588604	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	0	0	0	no_errors	0	0	0	42	0	0	65	8	10.96	0	0	0.00	0	0	0.00
HELZ2	0	genome.wustl.edu	37	20	62203346	62203346	+	RNA	SNP	G	G	A			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	20	62203346	62203346	G	A	SNP	HELZ2	ENST00000479540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	0	0	0	no_errors	rs112287941	G->A	0	35	0	0	22	7	24.14	0	0	0.00	0	0	0.00
CLIC4	0	genome.wustl.edu	37	1	25071991	25071993	+	RNA	DEL	AGC	AGC	-			TCGA-XU-A92W-01A-11D-A423-09	TCGA-XU-A92W-10A-01D-A426-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93954a05-70ea-4052-b371-fc776ad333ac	03b1356e-1a3a-4067-8090-4e9a23e88a0d	1	25071991	25071993	AGC	0	DEL	CLIC4	ENST00000489758	human	ensembl	74_37	1	known	rna	NULL	NULL	0.000:0.001:0.001	0	0	0	no_errors	0	0	0	21	0	0	27	4	12.9	6	0	0.00	5	0	0.00