Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
CROCCP3	0	genome.wustl.edu	37	1	16812113	16812113	+	RNA	SNP	G	G	A			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	1	16812113	16812113	G	A	SNP	CROCCP3	ENST00000263511	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	0	0	0	no_errors	rs200988154	G->A	0	58	0	0	31	4	11.43	29	0	0.00	35	2	5.41
MED6	0	genome.wustl.edu	37	14	71051621	71051621	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	14	71051621	71051621	G	A	SNP	MED6	ENST00000256379	human	ensembl	74_37	-1	known	missense	c.650	p.T217I	0.999	pirsf_Mediator_Med6_met/pln	pfam_Mediator_Med6,pirsf_Mediator_Med6_met/pln	0	no_errors	0	0	0	91	0	0	89	13	12.75	258	1	0.38	333	30	8.22
STARD5	0	genome.wustl.edu	37	15	81614806	81614806	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	15	81614806	81614806	T	C	SNP	STARD5	ENST00000325346	human	ensembl	74_37	-1	known	missense	c.175	p.T59A	0.001	NULL	NULL	0	no_errors	0	0	0	46	0	0	32	15	31.91	229	0	0.00	228	58	20.28
ZNF790	0	genome.wustl.edu	37	19	37310854	37310854	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	19	37310854	37310854	T	C	SNP	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	missense	c.392	p.Q131R	0.004	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	62	0	0	48	12	20	208	0	0.00	253	61	19.30
OTOP1	0	genome.wustl.edu	37	4	4228358	4228360	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	CAG	CAG	CAG	-	CAG	CAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	4	4228358	4228360	CAG	0	DEL	OTOP1	ENST00000296358	human	ensembl	74_37	-1	known	in_frame_del	c.234_232	p.L78in_frame_del	1.000:1.000:0.999	NULL	pfam_Otopetrin	0	no_errors	0	0	0	13	0	0	10	3	23.08	23	0	0.00	19	2	9.52
SREBF2	0	genome.wustl.edu	37	22	42262949	42262951	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	GCA	GCA	GCA	-	GCA	GCA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	22	42262949	42262951	GCA	0	DEL	SREBF2	ENST00000361204	human	ensembl	74_37	1	known	in_frame_del	c.203_205	p.S72in_frame_del	0.037:0.043:0.048	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	0	no_errors	rs143615881	GGCA->G	0	68	1	1.45	32	4	11.11	101	2	1.94	84	5	5.62
PCDHB10	0	genome.wustl.edu	37	5	140574260	140574260	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	5	140574260	140574260	C	T	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	1	known	missense	c.2135	p.A712V	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	0	no_errors	0	0	0	67	0	0	26	2	7.14	4	0	0.00	2	0	0.00
GOLGA8DP	0	genome.wustl.edu	37	15	22707272	22707272	+	RNA	SNP	G	G	T			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	15	22707272	22707272	G	T	SNP	GOLGA8DP	ENST00000314246	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.817	0	0	0	no_errors	rs112081409	G->T	0	25	1	3.85	8	5	38.46	0	0	0.00	0	0	0.00
HMGB3	0	genome.wustl.edu	37	X	150156358	150156360	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	X	150156358	150156360	GAG	0	DEL	HMGB3	ENST00000325307	human	ensembl	74_37	1	known	in_frame_del	c.574_576	p.E195in_frame_del	0.987:0.994:0.985	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	0	no_errors	0	0	0	34	0	0	24	4	14.29	0	0	0.00	0	0	0.00
MBD5	0	genome.wustl.edu	37	2	148779051	148779053	+	RNA	DEL	TGC	TGC	-			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	2	148779051	148779053	TGC	0	DEL	MBD5	ENST00000470063	human	ensembl	74_37	1	known	rna	NULL	NULL	0.968:0.972:0.990	0	0	0	no_errors	0	0	0	41	0	0	9	2	18.18	15	0	0.00	10	0	0.00
ZCCHC14	0	genome.wustl.edu	37	16	87525314	87525314	+	Frame_Shift_Del	DEL	C	C	-			TCGA-XU-A92X-01A-11D-A423-09	TCGA-XU-A92X-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1e5acf5d-6f68-4e84-8923-a52f96b012f5	5c05e9c1-352f-4b60-9ea7-05d483f3a571	16	87525314	87525314	C	0	DEL	ZCCHC14	ENST00000268616	human	ensembl	74_37	-1	known	frame_shift_del	c.120	p.P41fs	0.589	NULL	pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	0	no_errors	0	0	0	58	0	0	18	2	10	7	0	0.00	6	0	0.00