Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-ND5	0	genome.wustl.edu	37	MT	13753	13753	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	MT	13753	13753	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	1	known	missense	c.1417	p.S473P	NULL	pfam_NADH_DH_su5_C,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	0	no_errors	0	0	0	16	0	0	2	8	80	3	0	0.00	1	5	83.33
COL11A1	0	genome.wustl.edu	37	1	103540214	103540214	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	1	103540214	103540214	G	A	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.611	p.T204M	0.991	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	0	no_errors	rs199595073	G->A	0.9998,0.0001997	78	0	0	58	9	13.43	358	0	0.00	248	22	8.15
PKLR	0	genome.wustl.edu	37	1	155265093	155265093	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	1	155265093	155265093	C	T	SNP	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	missense	c.508	p.G170S	1	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	0	no_errors	0	0	0	74	1	1.33	85	14	14.14	57	0	0.00	79	6	7.06
PCDHGB1	0	genome.wustl.edu	37	5	140730598	140730598	+	Silent	SNP	C	C	T			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	5	140730598	140730598	C	T	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	1	known	silent	c.771	p.S257	0	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	0	no_errors	0	0	0	44	0	0	58	6	9.23	240	0	0.00	212	21	9.01
CNKSR3	0	genome.wustl.edu	37	6	154763352	154763352	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	6	154763352	154763352	T	C	SNP	CNKSR3	ENST00000607772	human	ensembl	74_37	-1	known	missense	c.289	p.N97D	1	pfam_CRIC_domain_Chordata	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,pfscan_PDZ,pfscan_SAM	0	no_errors	0	0	0	69	0	0	100	12	10.71	204	0	0.00	208	27	11.49
PEG10	0	genome.wustl.edu	37	7	94293816	94293816	+	Silent	SNP	G	G	A			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	7	94293816	94293816	G	A	SNP	PEG10	ENST00000482108	human	ensembl	74_37	1	known	silent	c.948	p.S316	0.972	superfamily_Znf_CCHC	pfam_Retrotrans_gag_dom,superfamily_Znf_CCHC,pfscan_Znf_CCHC	0	no_errors	0	0	0	66	0	0	69	8	10.39	113	0	0.00	102	7	6.42
KAT6A	0	genome.wustl.edu	37	8	41791074	41791074	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	8	41791074	41791074	C	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.4664	p.S1555N	1	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	0	no_errors	0	0	0	32	0	0	44	4	8.33	107	0	0.00	98	7	6.67
NRAP	0	genome.wustl.edu	37	10	115374703	115374703	+	Silent	SNP	C	C	T			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	10	115374703	115374703	C	T	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	silent	c.3105	p.T1035	0.001	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	0	no_errors	rs372300454	C->T	0	52	0	0	58	11	15.94	171	0	0.00	142	13	8.39
FAM111B	0	genome.wustl.edu	37	11	58893330	58893330	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	11	58893330	58893330	T	C	SNP	FAM111B	ENST00000343597	human	ensembl	74_37	1	known	missense	c.1760	p.I587T	0.013	superfamily_Trypsin-like_Pept_dom	superfamily_Trypsin-like_Pept_dom	0	no_errors	0	0	0	59	0	0	56	8	12.5	242	0	0.00	236	28	10.61
TIMELESS	0	genome.wustl.edu	37	12	56817404	56817404	+	Nonsense_Mutation	SNP	G	G	T			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	12	56817404	56817404	G	T	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	nonsense	c.2054	p.S685*	0.969	NULL	pfam_TIMELESS_C,pfam_Timeless	0	no_errors	0	0	0	23	0	0	32	3	8.57	154	0	0.00	165	19	10.33
CCDC43	0	genome.wustl.edu	37	17	42756399	42756399	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	17	42756399	42756399	T	C	SNP	CCDC43	ENST00000315286	human	ensembl	74_37	-1	known	missense	c.500	p.N167S	1	NULL	NULL	0	no_errors	0	0	0	47	0	0	50	8	13.79	287	0	0.00	276	22	7.33
LGALS3BP	0	genome.wustl.edu	37	17	76969290	76969290	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	17	76969290	76969290	G	C	SNP	LGALS3BP	ENST00000262776	human	ensembl	74_37	-1	known	missense	c.391	p.H131D	0.039	superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold	pfam_SRCR,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,pfscan_BTB/POZ-like,pfscan_SRCR,prints_SRCR	0	no_errors	0	0	0	37	0	0	37	5	11.9	103	0	0.00	104	10	8.77
GPS1	0	genome.wustl.edu	37	17	80012657	80012657	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	17	80012657	80012657	G	A	SNP	GPS1	ENST00000355130	human	ensembl	74_37	1	known	missense	c.700	p.V234I	1	pfam_26S_proteasome_reg_su-Rpn7	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	0	no_errors	rs149095451	G->A	0.9998,0.0001997	36	0	0	32	5	13.51	134	0	0.00	129	17	11.64
GATAD2A	0	genome.wustl.edu	37	19	19613159	19613159	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	19	19613159	19613159	G	T	SNP	GATAD2A	ENST00000358713	human	ensembl	74_37	1	known	missense	c.1595	p.R532L	1	NULL	pfam_Znf_GATA,pfscan_Znf_GATA	0	no_errors	0	0	0	49	0	0	61	5	7.58	44	0	0.00	76	7	8.43
MT-RNR2	0	genome.wustl.edu	37	MT	2778	2778	+	RNA	SNP	T	T	C			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	MT	2778	2778	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	400	1	0.25	299	48	13.83	0	0	0.00	0	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102304673	102304673	+	RNA	SNP	T	T	C			TCGA-XU-A92Y-01A-11D-A423-09	TCGA-XU-A92Y-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d5cdc7f7-9e87-45b5-a91b-4a2cfa9fd9e8	52477ee5-459e-424e-9f5a-7d9aa1216d21	15	102304673	102304673	T	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	0.999	0	0	0	no_errors	rs200623579	T->C	0	21	0	0	15	4	21.05	3	0	0.00	1	0	0.00