Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
PCDHGA2	0	genome.wustl.edu	37	5	140720421	140720421	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-AAXX-01A-11D-A428-09	TCGA-XU-AAXX-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1184247f-b47c-4606-86c0-3ba4842ce881	826eefc1-49d9-43d3-bad6-3557be4cb2f1	5	140720421	140720421	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	1	known	missense	c.1883	p.T628M	1	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	0	no_errors	0	0	0	49	0	0	41	5	10.64	8	0	0.00	2	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102303564	102303564	+	RNA	SNP	G	G	T			TCGA-XU-AAXX-01A-11D-A428-09	TCGA-XU-AAXX-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1184247f-b47c-4606-86c0-3ba4842ce881	826eefc1-49d9-43d3-bad6-3557be4cb2f1	15	102303564	102303564	G	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	rs373098846	G->T	0	18	0	0	5	3	37.5	0	0	0.00	2	0	0.00
ZNF208	0	genome.wustl.edu	37	19	22154197	22154197	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-AAXX-01A-11D-A428-09	TCGA-XU-AAXX-10A-01D-A42B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1184247f-b47c-4606-86c0-3ba4842ce881	826eefc1-49d9-43d3-bad6-3557be4cb2f1	19	22154197	22154197	T	A	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.3639	p.R1213S	0	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	rs560585093	T->A	0.9998,0.0001997	38	1	2.56	44	4	8.33	3	0	0.00	6	0	0.00
HELZ2	0	genome.wustl.edu	37	20	62202620	62202620	+	RNA	SNP	A	A	C			TCGA-XU-AAXX-01A-11D-A428-09	TCGA-XU-AAXX-10A-01D-A42B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1184247f-b47c-4606-86c0-3ba4842ce881	826eefc1-49d9-43d3-bad6-3557be4cb2f1	20	62202620	62202620	A	C	SNP	HELZ2	ENST00000479540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.503	0	0	0	no_errors	0	0	0	50	1	1.96	32	12	27.27	0	0	0.00	0	0	0.00
FOXD1	0	genome.wustl.edu	37	5	72744018	72744020	+	In_Frame_Del	DEL	CGC	CGC	-			TCGA-XU-AAXX-01A-11D-A428-09	TCGA-XU-AAXX-10A-01D-A42B-09	CGC	CGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1184247f-b47c-4606-86c0-3ba4842ce881	826eefc1-49d9-43d3-bad6-3557be4cb2f1	5	72744018	72744020	CGC	0	DEL	FOXD1	ENST00000499003	human	ensembl	74_37	-1	known	in_frame_del	c.170_168	p.R57in_frame_del	1.000:1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	0	no_errors	0	0	0	25	0	0	14	3	17.65	5	0	0.00	10	0	0.00
LOC100133091	0	genome.wustl.edu	37	7	76256104	76256105	+	RNA	INS	-	-	GGAGGGCGGTGT			TCGA-XU-AAXX-01A-11D-A428-09	TCGA-XU-AAXX-10A-01D-A42B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1184247f-b47c-4606-86c0-3ba4842ce881	826eefc1-49d9-43d3-bad6-3557be4cb2f1	7	76256104	76256105	0	GGAGGGCGGTGT	INS	LOC100133091	ENST00000418663	human	ensembl	74_37	1	known	rna	NULL	NULL	0.012:0.012	0	0	0	no_errors	rs370134150	G->GGGAGGGCGGTGT	0	26	0	0	19	6	24	13	0	0.00	6	0	0.00