Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
SMAP2	0	genome.wustl.edu	37	1	40872437	40872437	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	1	40872437	40872437	G	T	SNP	SMAP2	ENST00000372718	human	ensembl	74_37	1	known	missense	c.133	p.V45L	0.998	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	0	no_errors	0	0	0	59	0	0	39	6	13.04	201	0	0.00	146	13	8.07
OCIAD2	0	genome.wustl.edu	37	4	48906563	48906563	+	Missense_Mutation	SNP	C	C	G			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	4	48906563	48906563	C	G	SNP	OCIAD2	ENST00000508632	human	ensembl	74_37	-1	known	missense	c.4	p.A2P	0.975	NULL	pfam_OCIA	0	no_errors	0	0	0	82	0	0	46	6	11.54	249	0	0.00	181	23	11.27
RAI14	0	genome.wustl.edu	37	5	34811968	34811968	+	Silent	SNP	A	A	G			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	5	34811968	34811968	A	G	SNP	RAI14	ENST00000515799	human	ensembl	74_37	1	known	silent	c.663	p.G221	1	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	0	no_errors	0	0	0	73	0	0	56	6	9.68	306	0	0.00	292	17	5.50
MAP3K1	0	genome.wustl.edu	37	5	56179432	56179432	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	5	56179432	56179432	A	G	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	1	novel	missense	c.3745	p.I1249V	1	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	137	0	0	81	8	8.99	291	0	0.00	272	12	4.21
MAPT	0	genome.wustl.edu	37	17	44096082	44096082	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	17	44096082	44096082	G	A	SNP	MAPT	ENST00000344290	human	ensembl	74_37	1	known	missense	c.2101	p.G701R	1	pfam_MAP_tubulin-bd_rpt	pfam_MAP_tubulin-bd_rpt,prints_Tau	0	no_errors	0	0	0	90	0	0	85	8	8.6	292	0	0.00	207	13	5.91
CCDC67	0	genome.wustl.edu	37	11	93097356	93097357	+	Frame_Shift_Ins	INS	-	-	G			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	11	93097356	93097357	0	G	INS	CCDC67	ENST00000298050	human	ensembl	74_37	1	known	frame_shift_ins	c.328_329	p.L110fs	0.997:1.000	superfamily_MHC_II-assoc_invariant_trimer	superfamily_MHC_II-assoc_invariant_trimer	0	no_errors	0	0	0	115	0	0	89	11	11	211	0	0.00	249	14	5.32
MT-CO2	0	genome.wustl.edu	37	MT	7980	7980	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	MT	7980	7980	A	G	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	1	known	missense	c.395	p.D132G	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	0	no_errors	0	0	0	401	0	0	54	66	55	1	0	0.00	6	0	0.00
LOC101929676	0	genome.wustl.edu	37	4	119554804	119554804	+	RNA	SNP	G	G	A			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	4	119554804	119554804	G	A	SNP	LOC101929676	ENST00000567913	human	ensembl	74_37	1	known	rna	NULL	NULL	0.251	0	0	0	no_errors	0	0	0	59	1	1.67	23	4	14.81	6	0	0.00	8	0	0.00
RFX1	0	genome.wustl.edu	37	19	14074690	14074690	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	19	14074690	14074690	C	T	SNP	RFX1	ENST00000254325	human	ensembl	74_37	-1	known	missense	c.2341	p.V781M	1	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	0	no_errors	0	0	0	21	0	0	20	3	13.04	14	0	0.00	6	0	0.00
KRTAP10-1	0	genome.wustl.edu	37	21	45959695	45959695	+	Silent	SNP	G	G	T			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	21	45959695	45959695	G	T	SNP	KRTAP10-1	ENST00000400375	human	ensembl	74_37	-1	known	silent	c.339	p.T113	0.578	NULL	NULL	0	no_errors	0	0	0	54	1	1.82	37	4	9.76	5	0	0.00	6	0	0.00
ENSG00000216020	0	genome.wustl.edu	37	3	191693737	191693749	+	RNA	DEL	TCTCTCCGTGTGT	TCTCTCCGTGTGT	-			TCGA-XU-AAXZ-01A-11D-A428-09	TCGA-XU-AAXZ-10A-01D-A42B-09	TCTCTCCGTGTGT	TCTCTCCGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4555a0e7-efe1-45de-b2a4-3e5b1930b4b9	c3b2e9a1-8d1e-4baf-b47b-79a4df0f3abc	3	191693737	191693749	TCTCTCCGTGTGT	0	DEL	ENSG00000216020	ENST00000401201	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.003:0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	0	0	0	no_errors	0	0	0	11	0	0	5	3	37.5	0	0	0.00	0	0	0.00