Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
HLA-DQB2	0	genome.wustl.edu	37	6	32726788	32726788	+	Missense_Mutation	SNP	T	T	C			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	6	32726788	32726788	T	C	SNP	HLA-DQB2	ENST00000435145	human	ensembl	74_37	-1	known	missense	c.485	p.D162G	0.997	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_b_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	0	no_errors	rs56536369	T->C	0	51	1	1.92	31	5	13.89	66	0	0.00	41	2	4.65
RBAK	0	genome.wustl.edu	37	7	5104287	5104287	+	Silent	SNP	T	T	G			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	7	5104287	5104287	T	G	SNP	RBAK	ENST00000353796	human	ensembl	74_37	1	known	silent	c.1200	p.L400	0.552	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	40	0	0	50	9	15.25	169	0	0.00	125	13	9.42
DNAH11	0	genome.wustl.edu	37	7	21723504	21723504	+	Missense_Mutation	SNP	T	T	C			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	7	21723504	21723504	T	C	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	1	known	missense	c.5584	p.Y1862H	1	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	0	no_errors	0	0	0	84	0	0	87	9	9.38	230	0	0.00	168	21	11.11
TH	0	genome.wustl.edu	37	11	2185541	2185541	+	Silent	SNP	G	G	A			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	11	2185541	2185541	G	A	SNP	TH	ENST00000381178	human	ensembl	74_37	-1	known	silent	c.1509	p.P503	0.978	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Tyr_3_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_Tyrosine_hydroxylase_CS,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Tyr_3_mOase	0	no_errors	0	0	0	31	0	0	66	15	18.52	33	0	0.00	44	4	8.33
SOX5	0	genome.wustl.edu	37	12	23818447	23818447	+	Missense_Mutation	SNP	G	G	A			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	12	23818447	23818447	G	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.862	p.R288W	1	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	0	no_errors	rs557463084	G->A	0.9998,0.0001997	103	0	0	78	14	15.22	78	0	0.00	63	3	4.55
KRT3	0	genome.wustl.edu	37	12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	12	53183951	53183951	C	T	SNP	KRT3	ENST00000309505	human	ensembl	74_37	-1	known	missense	c.1765	p.G589S	0.004	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	0	no_errors	0	0	0	20	0	0	24	5	17.24	27	0	0.00	25	5	16.67
MED13L	0	genome.wustl.edu	37	12	116445404	116445404	+	Nonsense_Mutation	SNP	G	G	A			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	12	116445404	116445404	G	A	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	nonsense	c.2050	p.Q684*	1	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	0	no_errors	0	0	0	37	0	0	38	4	9.52	133	2	1.45	83	12	12.50
CYP1A2	0	genome.wustl.edu	37	15	75047181	75047181	+	Missense_Mutation	SNP	G	G	T			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	15	75047181	75047181	G	T	SNP	CYP1A2	ENST00000343932	human	ensembl	74_37	1	known	missense	c.1303	p.A435S	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	0	no_errors	0	0	0	52	0	0	42	10	19.23	102	0	0.00	62	12	16.22
EPG5	0	genome.wustl.edu	37	18	43497645	43497645	+	Nonsense_Mutation	SNP	G	G	A			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	18	43497645	43497645	G	A	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	nonsense	c.3238	p.Q1080*	1	NULL	NULL	0	no_errors	0	0	0	78	0	0	64	5	7.25	234	0	0.00	122	7	5.43
SETD1A	0	genome.wustl.edu	37	16	30982809	30982811	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	TCC	TCC	TCC	-	TCC	TCC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	16	30982809	30982811	TCC	0	DEL	SETD1A	ENST00000262519	human	ensembl	74_37	1	known	in_frame_del	c.3127_3129	p.S1046in_frame_del	0.734:0.781:0.676	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	0	no_errors	0	0	0	30	0	0	28	4	12.5	44	0	0.00	18	3	14.29
KRTAP4-8	0	genome.wustl.edu	37	17	39254149	39254149	+	Missense_Mutation	SNP	G	G	C			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	17	39254149	39254149	G	C	SNP	KRTAP4-8	ENST00000333822	human	ensembl	74_37	-1	known	missense	c.188	p.T63S	0.004	pfam_Keratin-assoc	pfam_Keratin-assoc	0	no_errors	rs201246375	G->C	0	38	0	0	46	6	11.54	1	0	0.00	1	0	0.00
EIF3L	0	genome.wustl.edu	37	22	38273724	38273724	+	Missense_Mutation	SNP	C	C	T			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	22	38273724	38273724	C	T	SNP	EIF3L	ENST00000412331	human	ensembl	74_37	1	known	missense	c.1121	p.A374V	1	pfam_eIF3l	pfam_eIF3l	0	no_errors	0	0	0	54	0	0	53	4	7.02	32	0	0.00	10	0	0.00
KIF13A	0	genome.wustl.edu	37	6	17987760	17987795	+	RNA	DEL	GCCGCCGCCGCTGCAGCCGCGCGCCCCTCGAGCGCG	GCCGCCGCCGCTGCAGCCGCGCGCCCCTCGAGCGCG	-			TCGA-YT-A95G-01A-11D-A428-09	TCGA-YT-A95G-10A-01D-A42B-09	GCCGCCGCCGCTGCAGCCGCGCGCCCCTCGAGCGCG	GCCGCCGCCGCTGCAGCCGCGCGCCCCTCGAGCGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a9bee25-52ee-4f84-a427-fde2e33be3af	3a465c7f-e359-471f-824c-ee4801836e8c	6	17987760	17987795	GCCGCCGCCGCTGCAGCCGCGCGCCCCTCGAGCGCG	0	DEL	KIF13A	ENST00000507576	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001:0.002:0.000:0.000:0.003:0.006:0.003:0.455:0.402:0.335:0.038:0.016:0.010:0.001:0.001:0.005:0.005:0.001:0.002:0.024:0.001:0.001:0.002:0.001:0.003:0.006:0.007:0.016:0.080:0.100:0.188:0.265:0.293:0.305:0.304	0	0	0	no_errors	0	0	0	16	0	0	10	4	28.57	0	0	0.00	0	0	0.00