Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
ITM2A	0	genome.wustl.edu	37	X	78618445	78618445	+	Missense_Mutation	SNP	A	A	C			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	X	78618445	78618445	A	C	SNP	ITM2A	ENST00000373298	human	ensembl	74_37	-1	known	missense	c.435	p.F145L	0.998	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	0	no_errors	0	0	0	34	0	0	31	10	24.39	113	0	0.00	92	18	16.36
SCNN1D	0	genome.wustl.edu	37	1	1222276	1222276	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	1	1222276	1222276	C	T	SNP	SCNN1D	ENST00000379116	human	ensembl	74_37	1	known	missense	c.1040	p.P347L	0	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	0	no_errors	rs543238689	C->T	0.9998,0.0001997	43	0	0	28	9	24.32	132	0	0.00	96	14	12.73
SENP6	0	genome.wustl.edu	37	6	76343306	76343306	+	Silent	SNP	C	C	A			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	6	76343306	76343306	C	A	SNP	SENP6	ENST00000370014	human	ensembl	74_37	1	known	silent	c.217	p.R73	0.996	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	0	no_errors	0	0	0	118	0	0	79	6	7.06	276	1	0.36	236	27	10.27
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	390	0	0	272	31	10.23	164	0	0.00	129	19	12.84
SLC26A10	0	genome.wustl.edu	37	12	58019923	58019923	+	RNA	SNP	C	C	T			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	12	58019923	58019923	C	T	SNP	SLC26A10	ENST00000483647	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	37	0	0	25	4	13.79	290	0	0.00	186	32	14.68
SETD1A	0	genome.wustl.edu	37	16	30972682	30972682	+	Missense_Mutation	SNP	G	G	T			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	16	30972682	30972682	G	T	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	1	known	missense	c.341	p.C114F	1	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	0	no_errors	0	0	0	45	0	0	41	4	8.89	176	1	0.56	154	12	7.23
ZNF177	0	genome.wustl.edu	37	19	9489731	9489731	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	19	9489731	9489731	A	G	SNP	ZNF177	ENST00000434737	human	ensembl	74_37	1	known	missense	c.127	p.M43V	1	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	64	0	0	41	13	24.07	296	0	0.00	219	24	9.88
ZNF222	0	genome.wustl.edu	37	19	44529568	44529568	+	RNA	SNP	C	C	G			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	19	44529568	44529568	C	G	SNP	ZNF222	ENST00000590160	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	36	0	0	39	4	9.3	175	0	0.00	126	13	9.35
SCO2	0	genome.wustl.edu	37	22	50962528	50962528	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	22	50962528	50962528	G	A	SNP	SCO2	ENST00000252785	human	ensembl	74_37	-1	known	missense	c.313	p.H105Y	0.903	pfam_SCO1/SenC,superfamily_Thioredoxin-like_fold,pirsf_Synth_of_cyt-c-oxidase_Sco1/2	pfam_SCO1/SenC,superfamily_Thioredoxin-like_fold,pirsf_Synth_of_cyt-c-oxidase_Sco1/2	0	no_errors	0	0	0	28	0	0	14	2	12.5	98	0	0.00	80	10	11.11
TYMP	0	genome.wustl.edu	37	22	50968040	50968040	+	Silent	SNP	G	G	C			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	22	50968040	50968040	G	C	SNP	TYMP	ENST00000252029	human	ensembl	74_37	-1	known	silent	c.99	p.P33	0	superfamily_Glycosyl_Trfase_fam3_N_dom,pirsf_Pyrmidine_PPase	pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	0	no_errors	0	0	0	93	0	0	45	4	8.16	91	1	1.09	71	8	10.00
ITM2A	0	genome.wustl.edu	37	X	78618440	78618440	+	Frame_Shift_Del	DEL	T	T	-			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	X	78618440	78618440	T	0	DEL	ITM2A	ENST00000373298	human	ensembl	74_37	-1	known	frame_shift_del	c.440	p.K147fs	1	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	0	no_errors	rs36103089	CT->C	0	33	0	0	33	9	21.43	109	0	0.00	90	18	16.67
TRAK1	0	genome.wustl.edu	37	3	42251577	42251578	+	In_Frame_Ins	INS	-	-	GGAGGA			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	-	-	-	GGAGGA	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	3	42251577	42251578	0	GGAGGA	INS	TRAK1	ENST00000341421	human	ensembl	74_37	1	known	in_frame_ins	c.1889_1890	p.634in_frame_insEE	0.010:0.044	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	0	no_errors	0	0	0	14	0	0	12	2	14.29	6	0	0.00	3	2	40.00
MUC12	0	genome.wustl.edu	37	7	100641735	100641735	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	7	100641735	100641735	A	G	SNP	MUC12	ENST00000536621	human	ensembl	74_37	1	known	missense	c.7891	p.T2631A	0.006	NULL	pfam_SEA_dom	0	no_errors	0	0	0	9	0	0	7	5	41.67	6	0	0.00	3	0	0.00
ZNF532	0	genome.wustl.edu	37	18	56651490	56651490	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	18	56651490	56651490	C	T	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	1	known	missense	c.3698	p.P1233L	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	0	no_errors	0	0	0	63	0	0	53	4	7.02	0	0	0.00	0	0	0.00
FOXE3	0	genome.wustl.edu	37	1	47882166	47882168	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	1	47882166	47882168	GGC	0	DEL	FOXE3	ENST00000335071	human	ensembl	74_37	1	known	in_frame_del	c.179_181	p.R64in_frame_del	0.991:0.856:0.786	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	0	no_errors	0	0	0	8	0	0	4	2	33.33	0	0	0.00	0	0	0.00
NKPD1	0	genome.wustl.edu	37	19	45655769	45655771	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	19	45655769	45655771	CTG	0	DEL	NKPD1	ENST00000317951	human	ensembl	74_37	-1	known	in_frame_del	c.1926_1924	p.Q642in_frame_del	0.910:0.925:0.950	NULL	pfam_KAP_NTPase	0	no_errors	0	0	0	35	0	0	17	2	10.53	28	0	0.00	10	0	0.00
BMS1P20	0	genome.wustl.edu	37	22	22661172	22661173	+	RNA	INS	-	-	C			TCGA-ZB-A96A-01A-11D-A428-09	TCGA-ZB-A96A-10A-01D-A42B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a646c617-55f7-49ec-9a1a-a5bd4f8d147a	b7627666-1ce3-43b3-b2b7-42ae973cd6ad	22	22661172	22661173	0	C	INS	BMS1P20	ENST00000426066	human	ensembl	74_37	1	known	rna	NULL	NULL	0.640:0.833	0	0	0	no_errors	0	0	0	135	0	0	114	9	7.32	0	0	0.00	0	0	0.00