Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MTMR1	0	genome.wustl.edu	37	X	149931163	149931163	+	Silent	SNP	G	G	A			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	X	149931163	149931163	G	A	SNP	MTMR1	ENST00000445323	human	ensembl	74_37	1	known	silent	c.1983	p.S661	0.002	NULL	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	0	no_errors	rs143691344	G->A	0	43	0	0	22	4	15.38	54	0	0.00	34	3	8.11
HNRNPR	0	genome.wustl.edu	37	1	23650155	23650155	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	1	23650155	23650155	G	A	SNP	HNRNPR	ENST00000374616	human	ensembl	74_37	-1	known	missense	c.569	p.P190L	1	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	0	no_errors	0	0	0	104	0	0	69	6	8	192	1	0.52	143	10	6.45
KCNT2	0	genome.wustl.edu	37	1	196438174	196438174	+	Nonsense_Mutation	SNP	G	G	A			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	1	196438174	196438174	G	A	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	nonsense	c.409	p.R137*	1	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	0	no_errors	0	0	0	318	1	0.31	196	15	7.11	191	1	0.52	153	17	10.00
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	531	0	0	318	38	10.67	153	0	0.00	95	5	5.00
GPRC5C	0	genome.wustl.edu	37	17	72428280	72428280	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	17	72428280	72428280	G	A	SNP	GPRC5C	ENST00000392627	human	ensembl	74_37	1	known	missense	c.103	p.G35R	1	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	0	no_errors	0	0	0	54	0	0	18	4	18.18	88	0	0.00	79	10	11.24
ZC3H4	0	genome.wustl.edu	37	19	47569869	47569869	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	19	47569869	47569869	T	C	SNP	ZC3H4	ENST00000253048	human	ensembl	74_37	-1	known	missense	c.3656	p.N1219S	1	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	0	no_errors	0	0	0	70	0	0	40	6	13.04	100	0	0.00	97	7	6.67
PLXNB2	0	genome.wustl.edu	37	22	50715077	50715077	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	22	50715077	50715077	T	A	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	missense	c.5318	p.H1773L	1	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	0	no_errors	0	0	0	30	0	0	27	4	12.9	154	0	0.00	116	10	7.94
EOMES	0	genome.wustl.edu	37	3	27763427	27763428	+	In_Frame_Ins	INS	-	-	CGGCGC			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	-	-	-	CGGCGC	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	3	27763427	27763428	0	CGGCGC	INS	EOMES	ENST00000449599	human	ensembl	74_37	-1	known	in_frame_ins	c.359_358	p.120in_frame_insGA	0.116:0.075	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	0	no_errors	rs368178421	G->GCGC,GCGGCGC,GCGGCGGCGC	0.4635,.,0.5361,0.0003994	11	0	0	4	3	42.86	2	0	0.00	3	3	50.00
WNT9A	0	genome.wustl.edu	37	1	228112027	228112027	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	1	228112027	228112027	C	T	SNP	WNT9A	ENST00000272164	human	ensembl	74_37	-1	known	missense	c.427	p.A143T	0.947	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt9a	0	no_errors	0	0	0	49	0	0	45	4	8.16	22	0	0.00	10	0	0.00
CALCA	0	genome.wustl.edu	37	11	14991621	14991621	+	Silent	SNP	C	C	T			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	11	14991621	14991621	C	T	SNP	CALCA	ENST00000331587	human	ensembl	74_37	-1	known	silent	c.87	p.R29	0.121	pfam_Procalcitonin/adrenomedullin	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Calcitonin	0	no_errors	0	0	0	56	0	0	25	4	13.79	5	0	0.00	6	0	0.00
ARHGAP5	0	genome.wustl.edu	37	14	32546583	32546583	+	Silent	SNP	G	G	A			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	14	32546583	32546583	G	A	SNP	ARHGAP5	ENST00000396582	human	ensembl	74_37	1	known	silent	c.12	p.P4	1	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	0	no_errors	0	0	0	45	0	0	30	4	11.76	16	0	0.00	8	0	0.00
NPIPA2	0	genome.wustl.edu	37	16	14859247	14859247	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	16	14859247	14859247	C	T	SNP	NPIPA2	ENST00000529166	human	ensembl	74_37	1	novel	missense	c.1087	p.R363W	0.065	NULL	NULL	0	no_errors	0	0	0	99	1	1	56	5	8.2	0	0	0.00	0	0	0.00
PSMD2	0	genome.wustl.edu	37	3	184017113	184017113	+	Frame_Shift_Del	DEL	C	C	-			TCGA-ZB-A96D-01A-11D-A428-09	TCGA-ZB-A96D-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5ab7dc0-9391-4515-8704-bea54cd0a647	64032bf9-77c9-4ca2-b1e0-2208c9a7e1bd	3	184017113	184017113	C	0	DEL	PSMD2	ENST00000310118	human	ensembl	74_37	1	known	frame_shift_del	c.59	p.G22fs	0.002	pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	0	no_errors	0	0	0	10	0	0	4	2	33.33	23	0	0.00	10	0	0.00