Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
PTPRZ1	0	genome.wustl.edu	37	7	121652082	121652082	+	Silent	SNP	G	G	C			TCGA-ZB-A96G-01A-11D-A428-09	TCGA-ZB-A96G-10A-01D-A42B-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ee2308ce-4b4b-4d83-9865-5485b968686e	1cbd7dff-ae2c-49e7-9762-1c026803f159	7	121652082	121652082	G	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	1	known	silent	c.2982	p.G994	0.983	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	0	no_errors	0	0	0	81	0	0	55	5	8.33	237	0	0.00	194	9	4.43
TAF1L	0	genome.wustl.edu	37	9	32633957	32633957	+	Missense_Mutation	SNP	A	A	T			TCGA-ZB-A96G-01A-11D-A428-09	TCGA-ZB-A96G-10A-01D-A42B-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ee2308ce-4b4b-4d83-9865-5485b968686e	1cbd7dff-ae2c-49e7-9762-1c026803f159	9	32633957	32633957	A	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.1621	p.S541T	1	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	0	no_errors	0	0	0	115	0	0	76	8	9.52	69	0	0.00	52	4	7.14
RC3H2	0	genome.wustl.edu	37	9	125621159	125621159	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96G-01A-11D-A428-09	TCGA-ZB-A96G-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ee2308ce-4b4b-4d83-9865-5485b968686e	1cbd7dff-ae2c-49e7-9762-1c026803f159	9	125621159	125621159	T	C	SNP	RC3H2	ENST00000357244	human	ensembl	74_37	-1	known	missense	c.2072	p.Y691C	1	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	0	no_errors	0	0	0	83	0	0	67	6	8.22	139	0	0.00	106	8	7.02
SYNE2	0	genome.wustl.edu	37	14	64453318	64453318	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96G-01A-11D-A428-09	TCGA-ZB-A96G-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ee2308ce-4b4b-4d83-9865-5485b968686e	1cbd7dff-ae2c-49e7-9762-1c026803f159	14	64453318	64453318	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	1	known	missense	c.2296	p.M766V	0	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	0	no_errors	rs556342048	A->G	0.9998,0.0001997	185	0	0	100	8	7.41	223	0	0.00	169	16	8.65
TSPEAR	0	genome.wustl.edu	37	21	45945637	45945637	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96G-01A-11D-A428-09	TCGA-ZB-A96G-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ee2308ce-4b4b-4d83-9865-5485b968686e	1cbd7dff-ae2c-49e7-9762-1c026803f159	21	45945637	45945637	T	C	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	missense	c.1235	p.K412R	0.993	pfam_EPTP,pfscan_EAR	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	0	no_errors	0	0	0	51	0	0	59	6	9.23	173	0	0.00	129	10	7.19
MLLT4	0	genome.wustl.edu	37	6	168366692	168366694	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-ZB-A96G-01A-11D-A428-09	TCGA-ZB-A96G-10A-01D-A42B-09	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ee2308ce-4b4b-4d83-9865-5485b968686e	1cbd7dff-ae2c-49e7-9762-1c026803f159	6	168366692	168366694	GAG	0	DEL	MLLT4	ENST00000366806	human	ensembl	74_37	1	known	in_frame_del	c.5203_5205	p.E1738in_frame_del	1.000:1.000:1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	0	no_errors	0	0	0	38	0	0	35	4	10.26	150	2	1.32	113	6	5.04
FAM230A	0	genome.wustl.edu	37	22	20710651	20710651	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96G-01A-11D-A428-09	TCGA-ZB-A96G-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ee2308ce-4b4b-4d83-9865-5485b968686e	1cbd7dff-ae2c-49e7-9762-1c026803f159	22	20710651	20710651	C	T	SNP	FAM230A	ENST00000434783	human	ensembl	74_37	1	known	missense	c.2383	p.P795S	0	NULL	pfam_Ret-finger_pr-like_3_antisense,superfamily_Kinase-like_dom	0	no_errors	0	0	0	114	0	0	116	9	7.2	5	0	0.00	6	0	0.00