Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val EPAS1 0 genome.wustl.edu 37 2 46611675 46611675 + Missense_Mutation SNP C C T TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 2 46611675 46611675 C T SNP EPAS1 ENST00000263734 human ensembl 74_37 1 known missense c.2489 p.S830L 1 NULL pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS 0 no_errors 0 0 0 23 0 0 15 7 31.82 176 0 0.00 133 22 14.19 REV1 0 genome.wustl.edu 37 2 100020920 100020920 + Missense_Mutation SNP G G A TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 2 100020920 100020920 G A SNP REV1 ENST00000258428 human ensembl 74_37 -1 known missense c.3032 p.P1011L 1 pirsf_REV1 pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N 0 no_errors 0 0 0 83 0 0 62 19 23.46 295 0 0.00 204 41 16.73 FAT4 0 genome.wustl.edu 37 4 126370429 126370429 + Missense_Mutation SNP A A T TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 4 126370429 126370429 A T SNP FAT4 ENST00000394329 human ensembl 74_37 1 known missense c.8258 p.Q2753L 0.996 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin 0 no_errors 0 0 0 42 0 0 56 8 12.5 266 0 0.00 168 25 12.95 GTF2I 0 genome.wustl.edu 37 7 74146970 74146970 + Missense_Mutation SNP T T A TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 T T T A T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 7 74146970 74146970 T A SNP GTF2I ENST00000324896 human ensembl 74_37 1 known missense c.1271 p.L424H 1 pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I 0 no_errors 0 0 0 374 0 0 272 78 22.29 155 0 0.00 67 22 24.72 YTHDF3 0 genome.wustl.edu 37 8 64124330 64124330 + RNA SNP G G T TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 8 64124330 64124330 G T SNP YTHDF3 ENST00000521674 human ensembl 74_37 1 known rna NULL NULL 0 0 0 0 no_errors 0 0 0 55 0 0 50 13 20.63 315 0 0.00 168 60 26.32 GRID1 0 genome.wustl.edu 37 10 87362204 87362204 + Silent SNP C C T TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 10 87362204 87362204 C T SNP GRID1 ENST00000327946 human ensembl 74_37 -1 known silent c.2856 p.P952 0.361 NULL pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt 0 no_errors rs200390116 C->T 0 31 0 0 37 7 15.91 24 0 0.00 16 4 20.00 MPP5 0 genome.wustl.edu 37 14 67768124 67768124 + Missense_Mutation SNP C C G TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 14 67768124 67768124 C G SNP MPP5 ENST00000261681 human ensembl 74_37 1 known missense c.595 p.P199A 1 smart_L27,pfscan_L27 pfam_GK/Ca_channel_bsu,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like 0 no_errors 0 0 0 106 0 0 72 8 9.88 204 0 0.00 178 39 17.97 RLTPR 0 genome.wustl.edu 37 16 67691319 67691319 + Silent SNP T T A TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 T T T A T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 16 67691319 67691319 T A SNP RLTPR ENST00000334583 human ensembl 74_37 1 known silent c.4206 p.L1402 0.009 NULL smart_Leu-rich_rpt_RNase_inh_sub-typ 0 no_errors 0 0 0 67 0 0 78 15 16.13 73 0 0.00 27 10 26.32 PAFAH1B1 0 genome.wustl.edu 37 17 2541571 2541571 + RNA SNP A A C TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 17 2541571 2541571 A C SNP PAFAH1B1 ENST00000572915 human ensembl 74_37 1 known rna NULL NULL 0.999 0 0 0 no_errors 0 0 0 36 1 2.7 39 14 26.42 178 0 0.00 120 37 23.42 SEPT9 0 genome.wustl.edu 37 17 75398454 75398454 + Silent SNP C C T TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 17 75398454 75398454 C T SNP SEPT9 ENST00000427177 human ensembl 74_37 1 known silent c.390 p.F130 0.959 NULL pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase 0 no_errors 0 0 0 65 0 0 46 20 30.3 49 0 0.00 38 8 17.39 GPLD1 0 genome.wustl.edu 37 6 24466943 24466944 + Frame_Shift_Ins INS - - T TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 - - - T - - Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 6 24466943 24466944 0 T INS GPLD1 ENST00000230036 human ensembl 74_37 -1 known frame_shift_ins c.786_785 p.Y262fs 0.966:0.968 NULL pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D 0 no_errors 0 0 0 72 0 0 56 15 21.13 335 0 0.00 212 35 14.17 MT-RNR2 0 genome.wustl.edu 37 MT 2916 2916 + RNA SNP G G A TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 MT 2916 2916 G A SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 128 0 0 170 23 11.92 2 0 0.00 1 0 0.00 MT-RNR2 0 genome.wustl.edu 37 MT 2978 2978 + RNA SNP T T C TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 MT 2978 2978 T C SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 72 0 0 53 38 41.3 2 0 0.00 2 0 0.00 FAM47C 0 genome.wustl.edu 37 X 37026799 37026799 + Missense_Mutation SNP A A G TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 X 37026799 37026799 A G SNP FAM47C ENST00000358047 human ensembl 74_37 1 known missense c.316 p.K106E 0.025 NULL NULL 0 no_errors rs143938481 A->G 0 45 0 0 48 4 7.69 7 0 0.00 9 0 0.00 SH3PXD2B 0 genome.wustl.edu 37 5 171881342 171881342 + Silent SNP G G T TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 5 171881342 171881342 G T SNP SH3PXD2B ENST00000311601 human ensembl 74_37 -1 known silent c.15 p.R5 0.993 superfamily_Phox,smart_Phox,pfscan_Phox pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain 0 no_errors 0 0 0 48 0 0 41 4 8.89 21 0 0.00 6 0 0.00 FLJ12825 0 genome.wustl.edu 37 12 54515302 54515302 + RNA SNP T T C TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 12 54515302 54515302 T C SNP FLJ12825 ENST00000515617 human ensembl 74_37 1 known rna NULL NULL 0 0 0 0 no_errors rs139731963 T->C 0 18 0 0 7 7 50 0 0 0.00 0 0 0.00 DNM1P47 0 genome.wustl.edu 37 15 102294999 102294999 + RNA SNP G G A TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 15 102294999 102294999 G A SNP DNM1P47 ENST00000561463 human ensembl 74_37 1 known rna NULL NULL 1 0 0 0 no_errors rs371619826 G->A 0 10 0 0 10 3 23.08 2 0 0.00 2 0 0.00 CLEC18B 0 genome.wustl.edu 37 16 74452071 74452071 + Silent SNP G G A TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 16 74452071 74452071 G A SNP CLEC18B ENST00000339953 human ensembl 74_37 -1 known silent c.342 p.P114 0 pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1 pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EG-like_dom,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1 0 no_errors rs62056016 G->A 0 29 0 0 22 5 18.52 3 0 0.00 1 0 0.00 KRTAP10-4 0 genome.wustl.edu 37 21 45994463 45994463 + Silent SNP C C T TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 21 45994463 45994463 C T SNP KRTAP10-4 ENST00000400374 human ensembl 74_37 1 known silent c.828 p.C276 0.339 NULL NULL 0 no_errors 0 0 0 52 0 0 44 4 8.33 14 0 0.00 8 0 0.00 GAGE13 0 genome.wustl.edu 37 X 49189242 49189242 + Frame_Shift_Del DEL T T - TCGA-ZB-A96K-01A-11D-A428-09 TCGA-ZB-A96K-10A-01D-A42B-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 17d87e86-0fec-4232-9b11-98cf11057310 ede73017-ccf1-40bb-931f-9e936ebe8891 X 49189242 49189242 T 0 DEL GAGE13 ENST00000381751 human ensembl 74_37 1 known frame_shift_del c.27 p.Y10fs 0.001 pfam_GAGE pfam_GAGE 0 no_errors 0 0 0 10 0 0 9 4 30.77 0 0 0.00 0 0 0.00