Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain ARID1A 8289 genome.wustl.edu 37 1 27087921 27087922 + Frame_Shift_Ins INS - - AT novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_006015.4 +1 reviewed p.M736fs 1.000:1.000 - - - - - - - - - NULL ARID1A 8289 genome.wustl.edu 37 1 27101478 27101490 + Frame_Shift_Del DEL GCCCTGCTCCCCT GCCCTGCTCCCCT - novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 GCCCTGCTCCCCT GCCCTGCTCCCCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_006015.4 +1 reviewed p.A1589fs 1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL HEATR8 374977 genome.wustl.edu 37 1 55107509 55107509 + RNA DEL C C - rs143493239 byCluster;by1000genomes TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NR_026782.1 +1 validated NULL 0.962 - - - - - - - - - - ADAMTS4 9507 genome.wustl.edu 37 1 161166023 161166023 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_005099.4 -1 reviewed p.R343Q 1.000 59 0% 65 50.8% 2 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" NRXN1 9378 genome.wustl.edu 37 2 50464013 50464013 + Missense_Mutation SNP T T C novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_001135659.1 -1 reviewed p.I1194V 0.998 181 0% 105 43.8% 0 - benign(0) tolerated(1) - HMMSmart_LamG,superfamily_ConA_like_lec_gl TBC1D8 11138 genome.wustl.edu 37 2 101656720 101656720 + Missense_Mutation SNP G G A novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_001102426.1 -1 validated p.R319W 0.607 101 0% 99 47.5% 1 0% possibly_damaging(0.879) deleterious(0.01) deleterious(0.748) HMMPfam_GRAM,HMMSmart_SM00568 SEC13 6396 genome.wustl.edu 37 3 10345799 10345799 + Nonsense_Mutation SNP T T A novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_183352.1 -1 reviewed p.K256* 1.000 121 0% 116 38.8% 125 3.2% - - - HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 CTNNB1 1499 genome.wustl.edu 37 3 41266113 41266113 + Missense_Mutation SNP C C T rs121913403 byCluster TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_001098209.1 +1 reviewed p.S37F 1.000 74 0% 67 43.3% 37 37.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SEC22C 9117 genome.wustl.edu 37 3 42597440 42597440 + Missense_Mutation SNP G G T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_032970.2 -1 reviewed p.F231L 1.000 110 0% 100 37% 21 28.5% possibly_damaging(0.892) tolerated(0.11) deleterious(0.623) NULL PIK3CA 5290 genome.wustl.edu 37 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_006218.2 +1 reviewed p.E542K 1.000 101 0% 70 47.1% 4 25% probably_damaging(0.989) deleterious(0.03) deleterious(0.804) HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold IGFBP7 3490 genome.wustl.edu 37 4 57898678 57898678 + Missense_Mutation SNP C C G novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_001553.1 -1 provisional p.C248S 1.000 178 0% 124 34.7% 1296 5.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726 PCDHA1 56147 genome.wustl.edu 37 5 140166256 140166256 + Silent SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_018900.2 +1 reviewed p.N127 0.984 90 0% 121 46.3% 0 - - - - HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like MANEA 79694 genome.wustl.edu 37 6 96034639 96034639 + Silent SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_024641.2 +1 validated p.Y108 0.937 234 0% 215 42.8% 0 - - - - NULL UTRN 7402 genome.wustl.edu 37 6 144765436 144765436 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_007124.2 +1 reviewed p.T511I 1.000 66 0% 46 39.1% 1 0% benign(0.218) deleterious(0.01) neutral(0.427) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin IGF2R 3482 genome.wustl.edu 37 6 160479063 160479063 + Silent SNP T T C novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_000876.2 +1 reviewed p.S935 0.995 93 0% 64 43.8% 1 0% - - - superfamily_Mannose 6-phosphate receptor domain SSPO 23145 genome.wustl.edu 37 7 149506211 149506212 + Frame_Shift_Ins INS - - C rs111744217 byCluster;by1000genomes TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e ENST00000378016 +1 known p.R3069fs 0.000:0.000 - - - - - - - - - HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat GLIPR2 152007 genome.wustl.edu 37 9 36162403 36162403 + Missense_Mutation SNP G G A novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_022343.2 +1 provisional p.V117M 0.998 156 0% 162 55.6% 21 38% probably_damaging(0.977) tolerated(0.19) neutral(0.468) HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular COBRA1 25920 genome.wustl.edu 37 9 140166584 140166584 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_015456.3 +1 validated p.T466M 0.962 14 0% 22 36.4% 82 31.7% benign(0.005) tolerated(0.08) neutral(0.300) HMMPfam_COBRA1 ANKRD16 54522 genome.wustl.edu 37 10 5925985 5925985 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_001009941.2 -1 validated p.A212T 1.000 56 0% 60 25% 17 47% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK PTEN 5728 genome.wustl.edu 37 10 89692904 89692904 + Missense_Mutation SNP C C G rs121909224 byCluster TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e ENST00000371953 +1 known p.R130G 1.000 356 0% 259 41.7% 9 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II SPATS2 65244 genome.wustl.edu 37 12 49916574 49916574 + Missense_Mutation SNP G G A novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_023071.3 +1 validated p.R350Q 0.996 54 0% 55 32.7% 28 71.4% probably_damaging(1) tolerated(0.28) deleterious(0.531) HMMPfam_DUF1387 AMHR2 269 genome.wustl.edu 37 12 53819661 53819661 + Silent SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_020547.2 +1 reviewed p.R270 0.288 36 0% 39 33.3% 1 0% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ATP2B1 490 genome.wustl.edu 37 12 89997491 89997491 + Missense_Mutation SNP G G T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_001682.2 -1 reviewed p.A949D 1.000 138 0% 87 41.4% 7 0% possibly_damaging(0.807) tolerated(0.17) neutral(0.363) HMMPfam_Cation_ATPase_C,superfamily_SSF81665 KDM2B 84678 genome.wustl.edu 37 12 122018804 122018804 + Missense_Mutation SNP G G C novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_032590.4 -1 reviewed p.Q5E 0.007 61 0% 75 40% 0 - benign(0.001) tolerated(0.24) neutral(0.037) NULL TEP1 7011 genome.wustl.edu 37 14 20846342 20846342 + Silent SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_007110.4 -1 reviewed p.G1854 0.036 74 0% 84 46.4% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like ARHGEF40 55701 genome.wustl.edu 37 14 21550563 21550563 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_018071.3 +1 validated p.R1138W 0.607 26 0% 28 60.7% 21 33.3% probably_damaging(0.992) tolerated(0.18) deleterious(0.504) superfamily_DBL homology domain (DH-domain) ZFYVE26 23503 genome.wustl.edu 37 14 68257316 68257316 + Missense_Mutation SNP G G T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_015346.3 -1 reviewed p.Q910K 0.999 89 0% 121 43% 1 0% possibly_damaging(0.447) tolerated(0.06) deleterious(0.469) NULL RBBP6 5930 genome.wustl.edu 37 16 24574804 24574804 + Nonsense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_006910.4 +1 reviewed p.Q483* 1.000 125 0% 142 49.3% 3 33.3% - - - NULL CTCF 10664 genome.wustl.edu 37 16 67645291 67645291 + Nonsense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_006565.2 +1 reviewed p.Q186* 1.000 170 0% 159 43.4% 7 28.5% - - - NULL CTCF 10664 genome.wustl.edu 37 16 67645517 67645517 + Splice_Site SNP G G A novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_006565.2 +1 reviewed e1+1 1.000 115 0% 142 47.2% 2 50% - - - - HP 3240 genome.wustl.edu 37 16 72094689 72094689 + Missense_Mutation SNP T T C novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_005143.3 +1 reviewed p.I374T 1.000 240 0% 183 40.4% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys C17orf74 201243 genome.wustl.edu 37 17 7329740 7329740 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_175734.4 +1 validated p.R144W 0.000 72 0% 124 41.1% 0 - possibly_damaging(0.938) deleterious(0.03) deleterious(0.748) NULL EFTUD2 9343 genome.wustl.edu 37 17 42942389 42942389 + Silent SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_004247.3 -1 validated p.E398 0.962 138 0% 153 52.3% 10 40% - - - HMMPfam_GTP_EFTU,superfamily_SSF52540 ELAVL3 1995 genome.wustl.edu 37 19 11565676 11565676 + Missense_Mutation SNP C C A novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_001420.3 -1 reviewed p.A257S 1.000 216 0% 200 47% 0 - benign(0) tolerated(0.86) neutral(0.001) NULL NLRP2 55655 genome.wustl.edu 37 19 55495069 55495069 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_017852.3 +1 validated p.A668V 0.001 53 0% 103 38.8% 0 - possibly_damaging(0.452) tolerated(0.35) neutral(0.168) NULL CDH22 64405 genome.wustl.edu 37 20 44839105 44839105 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_021248.1 -1 reviewed p.R376H 0.999 5 0.000 7 0.571 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00112,superfamily_Cadherin-like BRWD1 54014 genome.wustl.edu 37 21 40571583 40571583 + Missense_Mutation SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_018963.3 -1 reviewed p.V1587I 0.183 160 0% 155 49.7% 3 0% benign(0.139) tolerated(0.06) neutral(0.335) superfamily_WD40 repeat-like ZC3H7B 23264 genome.wustl.edu 37 22 41735860 41735860 + Missense_Mutation SNP G G A novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_017590.4 +1 reviewed p.S286N 0.998 47 0% 53 39.6% 8 12.5% benign(0.002) tolerated(0.43) neutral(0.013) NULL LOC100129144 100129144 genome.wustl.edu 37 X 66594014 66594014 + Silent SNP C C T novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e XM_001721427.1 +1 model p.P27 0.141 153 0% 77 31.2% 0 - - - - superfamily_C2H2 and C2HC zinc fingers MED12 9968 genome.wustl.edu 37 X 70348505 70348505 + Missense_Mutation SNP C C G novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_005120.2 +1 reviewed p.R1138G 1.000 100 0% 108 49.1% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL H2BFWT 158983 genome.wustl.edu 37 X 103267828 103267828 + Silent SNP G G A novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_001002916.3 -1 reviewed p.A135 0.502 43 0% 50 46% 1 100% - - - HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold MAGEC1 9947 genome.wustl.edu 37 X 140996434 140996434 + Missense_Mutation SNP A A G novel TCGA-A5-A0GM-01A-11W-A062-09 TCGA-A5-A0GM-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d911e726-8eeb-44d1-8853-7a5fdb20c425 f8c4b0bb-ccd9-4290-a8b3-cf3778c7277e NM_005462.4 +1 reviewed p.R1082G 0.035 410 0% 251 47.8% 0 - possibly_damaging(0.502) deleterious(0.01) deleterious(0.573) HMMPfam_MAGE