Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain C1orf87 127795 genome.wustl.edu 37 1 60456364 60456364 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_152377.1 -1 predicted p.R541Q 0.254 503 0% 527 47.8% 0 - benign(0.131) tolerated(0.85) neutral(0.011) NULL SV2A 9900 genome.wustl.edu 37 1 149879346 149879346 + Missense_Mutation SNP A A C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_014849.3 -1 validated p.D528E 0.996 243 0% 268 48.1% 0 - possibly_damaging(0.892) deleterious(0.01) deleterious(0.757) HMMPfam_MFS_1 OR6N1 128372 genome.wustl.edu 37 1 158735840 158735840 + Silent SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001005185.1 -1 provisional p.F211 0.003 344 0% 324 43.5% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OBSCN 84033 genome.wustl.edu 37 1 228558889 228558889 + Missense_Mutation SNP G G C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001098623.1 +1 reviewed p.A6804P 0.160 4 0.000 7 0.714 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL RYR2 6262 genome.wustl.edu 37 1 237890494 237890494 + Silent SNP G G T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001035.2 +1 reviewed p.L3611 1.000 190 0% 143 25.9% 0 - - - - NULL RYR2 6262 genome.wustl.edu 37 1 237895389 237895389 + Missense_Mutation SNP G G T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001035.2 +1 reviewed p.R3660I 0.999 205 0% 171 46.8% 0 - benign(0.19) - - NULL DOCK10 55619 genome.wustl.edu 37 2 225721665 225721665 + Missense_Mutation SNP T T C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_014689.2 -1 validated p.R574G 1.000 45 0% 60 25% 0 - possibly_damaging(0.648) tolerated(0.24) neutral(0.265) NULL C3orf75 54859 genome.wustl.edu 37 3 47539822 47539822 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001031703.2 -1 validated p.R209Q 1.000 41 0% 56 51.8% 19 0% possibly_damaging(0.727) tolerated(0.34) neutral(0.288) HMMPfam_DUF2348 CPB1 1360 genome.wustl.edu 37 3 148545842 148545842 + Missense_Mutation SNP G G A rs193238667 by1000genomes TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001871.2 +1 reviewed p.R42H 0.001 201 0% 180 44.4% 0 - unknown(0) tolerated(0.34) - HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors SLC2A2 6514 genome.wustl.edu 37 3 170716904 170716904 + Missense_Mutation SNP T T G novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_000340.1 -1 reviewed p.S374R 0.114 313 0% 339 40.1% 0 - possibly_damaging(0.649) deleterious(0.01) deleterious(0.634) HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter MRPL47 57129 genome.wustl.edu 37 3 179311677 179311677 + Missense_Mutation SNP C C A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_020409.2 -1 reviewed p.D137Y 0.227 255 0% 247 55.1% 73 0% possibly_damaging(0.746) deleterious(0.03) deleterious(0.639) HMMPfam_MRP-L47 MB21D2 151963 genome.wustl.edu 37 3 192516732 192516732 + Missense_Mutation SNP T T C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_178496.3 -1 validated p.M307V 1.000 52 0% 84 22.6% 0 - benign(0.138) tolerated(0.18) neutral(0.068) NULL LAP3 51056 genome.wustl.edu 37 4 17585168 17585168 + Missense_Mutation SNP G G T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_015907.2 +1 validated p.A148S 1.000 90 0% 97 57.7% 10 0% benign(0.022) tolerated(0.06) neutral(0.324) HMMPfam_Peptidase_M17_N,superfamily_Macro domain-like UCHL1 7345 genome.wustl.edu 37 4 41270034 41270034 + Nonsense_Mutation SNP G G T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_004181.4 +1 reviewed p.E206* 1.000 53 0% 48 39.6% 13 0% - - - HMMPfam_Peptidase_C12,superfamily_SSF54001 SEC31A 22872 genome.wustl.edu 37 4 83750193 83750193 + Missense_Mutation SNP T T C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001077207.1 -1 reviewed p.N996S 1.000 114 0% 123 43.9% 82 0% probably_damaging(0.998) tolerated(0.18) deleterious(0.530) NULL FBXW7 55294 genome.wustl.edu 37 4 153247289 153247289 + Missense_Mutation SNP G G A rs149680468 TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_033632.2 -1 reviewed p.R505C 1.000 194 0% 181 40.3% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 MCTP1 79772 genome.wustl.edu 37 5 94046537 94046537 + Missense_Mutation SNP A A G novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_024717.4 -1 validated p.I939T 1.000 75 0% 77 45.5% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL PCDHA4 56144 genome.wustl.edu 37 5 140188969 140188969 + Missense_Mutation SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_018907.2 +1 reviewed p.A733T 0.057 49 0% 46 47.8% 1 0% benign(0) tolerated(0.25) neutral(0.037) NULL CNOT8 9337 genome.wustl.edu 37 5 154244884 154244884 + Missense_Mutation SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_004779.4 +1 provisional p.E84K 1.000 144 0% 160 46.9% 8 0% benign(0.103) tolerated(0.06) neutral(0.331) HMMPfam_CAF1,superfamily_Ribonuclease H-like BTNL2 56244 genome.wustl.edu 37 6 32362627 32362627 + Silent SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_019602.1 -1 provisional p.H418 0.025 194 0% 202 42.6% 0 - - - - HMMPfam_C2-set_2,superfamily_Immunoglobulin RPS10 6204 genome.wustl.edu 37 6 34392973 34392973 + Missense_Mutation SNP A A G novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001014.3 -1 reviewed p.I9T 1.000 28 0% 28 50% 722 0.2% benign(0.009) tolerated(0.42) neutral(0.015) HMMPfam_S10_plectin POU3F2 5454 genome.wustl.edu 37 6 99283794 99283794 + Missense_Mutation SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_005604.2 +1 validated p.A349T 1.000 48 0% 26 88.5% 0 - benign(0.141) tolerated(0.08) neutral(0.312) superfamily_Homeodomain-like PRDM1 639 genome.wustl.edu 37 6 106555117 106555117 + Missense_Mutation SNP T T C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001198.3 +1 reviewed p.V745A 0.999 170 0.6% 76 81.6% 1 0% benign(0.108) deleterious(0) neutral(0.453) NULL PPP1R17 10842 genome.wustl.edu 37 7 31736617 31736617 + Missense_Mutation SNP C C G novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_006658.3 +1 validated p.Q92E 0.992 205 0% 203 48.3% 0 - possibly_damaging(0.882) deleterious(0) deleterious(0.789) NULL MUC3A 4584 genome.wustl.edu 37 7 100551076 100551076 + Missense_Mutation SNP C C A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 XM_001725354.2 +1 model p.P553T 0.000 238 0% 270 43.7% 0 - - - - NULL ENTPD4 9583 genome.wustl.edu 37 8 23299143 23299143 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_004901.3 -1 validated p.G274D 1.000 240 0% 124 87.9% 6 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_GDA1_CD39 PRKDC 5591 genome.wustl.edu 37 8 48686735 48686735 + Nonstop_Mutation SNP C C A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 ENST00000314191 -1 known p.*4128L 1.000 28 0% 24 45.8% 53 0% - - - NULL CNGB3 54714 genome.wustl.edu 37 8 87738841 87738841 + Missense_Mutation SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_019098.4 -1 reviewed p.P86S 0.058 297 0% 226 42% 0 - benign(0) deleterious(0.04) neutral(0.349) NULL ALDH18A1 5832 genome.wustl.edu 37 10 97402778 97402778 + Missense_Mutation SNP G G C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_002860.3 -1 reviewed p.L92V 0.580 60 0% 97 64.9% 20 0% probably_damaging(1) tolerated(0.15) deleterious(0.741) HMMPfam_AA_kinase,superfamily_Carbamate kinase-like DCHS1 8642 genome.wustl.edu 37 11 6645139 6645139 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_003737.2 -1 reviewed p.V2590I 0.958 76 0% 87 39.1% 2 0% benign(0.031) tolerated(1) neutral(0.002) HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin UEVLD 55293 genome.wustl.edu 37 11 18568531 18568531 + Missense_Mutation SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001040697.1 -1 validated p.S261L 1.000 94 0% 102 51% 2 0% possibly_damaging(0.839) deleterious(0) deleterious(0.765) HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains OR5M3 219482 genome.wustl.edu 37 11 56237488 56237488 + Silent SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001004742.1 -1 provisional p.Y162 0.000 285 0% 288 51% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like NPAS4 266743 genome.wustl.edu 37 11 66190406 66190406 + Missense_Mutation SNP C C A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_178864.3 +1 validated p.S231Y 1.000 45 0% 43 48.8% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785 GNS 2799 genome.wustl.edu 37 12 65122806 65122806 + Missense_Mutation SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_002076.3 -1 reviewed p.T377I 1.000 131 0% 116 44.8% 8 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core SLC15A4 121260 genome.wustl.edu 37 12 129299500 129299500 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_145648.3 -1 validated p.S221N 1.000 261 0% 228 46.5% 3 0% benign(0.045) tolerated(0.24) neutral(0.040) HMMPfam_PTR2,superfamily_MFS general substrate transporter SACS 26278 genome.wustl.edu 37 13 23909977 23909977 + Missense_Mutation SNP C C A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_014363.4 -1 reviewed p.D2680Y 1.000 96 0% 106 47.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase KIAA1704 55425 genome.wustl.edu 37 13 45602090 45602090 + Missense_Mutation SNP A A T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_018559.2 +1 predicted p.R325S 0.999 167 0% 127 53.5% 12 0% benign(0.216) tolerated(0.09) neutral(0.318) NULL ABHD13 84945 genome.wustl.edu 37 13 108881664 108881664 + Missense_Mutation SNP T T C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_032859.2 +1 validated p.L33S 1.000 146 0% 139 38.8% 5 0% benign(0.024) tolerated(0.12) neutral(0.262) NULL RPL10L 140801 genome.wustl.edu 37 14 47120570 47120570 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_080746.2 -1 reviewed p.G124S 1.000 127 0.8% 127 22.8% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Ribosomal_L16,superfamily_Ribosomal_L10e/L16,PatternScan_RIBOSOMAL_L10E SIX6 4990 genome.wustl.edu 37 14 60976476 60976476 + Silent SNP G G C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_007374.2 +1 reviewed p.P120 0.859 20 0% 25 48% 0 - - - - NULL TOX3 27324 genome.wustl.edu 37 16 52473330 52473330 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001080430.2 -1 reviewed p.R513H 0.966 32 0% 11 90.9% 4 0% unknown(0) tolerated(0.29) - NULL E2F4 1874 genome.wustl.edu 37 16 67229820 67229820 + Missense_Mutation SNP G G C novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001950.3 +1 reviewed p.S315T 0.994 32 0% 35 82.9% 33 0% benign(0.007) tolerated(0.41) neutral(0.015) NULL CLEC18C 283971 genome.wustl.edu 37 16 70211337 70211337 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_173619.2 +1 validated p.A137V 0.000 28 0% 12 58.3% 0 - benign(0.059) tolerated(0.22) neutral(0.046) HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like TP53 7157 genome.wustl.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 byCluster TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_000546.4 -1 reviewed p.R273C 0.830 84 0% 58 86.2% 37 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_p53-like transcription factors,HMMPfam_P53 ARHGAP35 2909 genome.wustl.edu 37 19 47422114 47422114 + Missense_Mutation SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_004491.4 +1 reviewed p.S61N 1.000 93 0% 121 38% 0 - benign(0.225) tolerated(0.08) neutral(0.323) superfamily_P-loop containing nucleoside triphosphate hydrolases ARHGAP35 2909 genome.wustl.edu 37 19 47422527 47422530 + Frame_Shift_Del DEL CTGA CTGA - novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 CTGA CTGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_004491.4 +1 reviewed p.T200fs 1.000:1.000:1.000:1.000 - - - - - - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases KIR3DL3 115653 genome.wustl.edu 37 19 55247528 55247528 + Missense_Mutation SNP A A G novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_153443.3 +1 reviewed p.R400G 0.122 689 0% 672 42% 0 - benign(0) deleterious(0) neutral(0.445) NULL SIGLEC1 6614 genome.wustl.edu 37 20 3677789 3677789 + Missense_Mutation SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_023068.3 -1 reviewed p.R775C 0.506 7 0.000 11 0.364 0 - benign(0.097) deleterious(0.02) neutral(0.391) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin KRTAP27-1 643812 genome.wustl.edu 37 21 31709534 31709534 + Silent SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001077711.1 -1 provisional p.F151 0.135 284 0% 253 42.7% 0 - - - - HMMPfam_PMG SLC37A1 54020 genome.wustl.edu 37 21 43994957 43994957 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_018964.3 +1 reviewed p.L485F 1.000 36 0% 37 56.8% 15 0% benign(0.004) tolerated(0.4) neutral(0.016) superfamily_MFS general substrate transporter BCOR 54880 genome.wustl.edu 37 X 39932475 39932475 + Silent SNP G G A novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_001123385.1 -1 reviewed p.T708 0.022 33 0% 36 61.1% 0 - - - - NULL FRMPD3 84443 genome.wustl.edu 37 X 106808260 106808260 + Silent SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 XM_042978.6 +1 model p.G453 0.473 69 0% 92 53.3% 0 - - - - NULL RGAG1 57529 genome.wustl.edu 37 X 109697237 109697237 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_020769.2 +1 validated p.A1131V 0.000 555 0% 458 40.4% 0 - benign(0) tolerated(0.49) neutral(0.011) NULL ODZ1 10178 genome.wustl.edu 37 X 123779056 123779056 + Missense_Mutation SNP C C T novel TCGA-AP-A05J-01A-11W-A027-09 TCGA-AP-A05J-10A-01W-A027-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7838dfe6-954c-42d3-a2fe-a17c1ef20aa5 f5e3091c-27eb-4dc6-a88e-a02bc5f15c96 NM_014253.3 -1 reviewed p.G605S 1.000 389 0% 396 47% 0 - possibly_damaging(0.921) deleterious(0) deleterious(0.816) HMMSmart_EGF,HMMPfam_EGF_2