Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NRAS	4893	genome.wustl.edu	37	1	115258685	115258685	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_002524.3	-1	reviewed	p.D33H	1.000	183	0%	111	13.5%	27	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITGA10	8515	genome.wustl.edu	37	1	145538010	145538010	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_003637.3	+1	reviewed	p.E897Q	1.000	575	0%	286	18.2%	0	-	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
OR6K3	391114	genome.wustl.edu	37	1	158687254	158687254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001005327.2	-1	validated	p.V234I	0.000	296	0%	190	38.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
CEP350	9857	genome.wustl.edu	37	1	180013258	180013258	+	Silent	SNP	T	T	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	ENST00000418229	+1	known	p.F133V	0.681	26	0%	17	58.8%	2	50%	-	-	-	NULL
NID1	4811	genome.wustl.edu	37	1	236201434	236201434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_002508.2	-1	reviewed	p.T419A	1.000	115	0%	87	16.1%	0	-	benign(0.223)	deleterious(0.05)	neutral(0.367)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
OR2G2	81470	genome.wustl.edu	37	1	247752159	247752159	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001001915.1	+1	provisional	p.T166	0.627	321	0%	315	16.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
KCNS3	3790	genome.wustl.edu	37	2	18113232	18113232	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_002252.3	+1	reviewed	p.H319	1.000	422	0%	129	15.5%	2	0%	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
MTA3	57504	genome.wustl.edu	37	2	42871294	42871294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_020744.2	+1	provisional	p.D137N	1.000	111	0.9%	73	23.3%	44	0%	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	HMMPfam_BAH,HMMSmart_BAH
THADA	63892	genome.wustl.edu	37	2	43755084	43755084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001083953.1	-1	validated	p.S1103F	1.000	314	0%	254	33.9%	12	50%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	HMMPfam_DUF2428
PSD4	23550	genome.wustl.edu	37	2	113956357	113956357	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_012455.2	+1	validated	p.L889	1.000	27	0%	28	21.4%	9	55.5%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ALS2CR12	130540	genome.wustl.edu	37	2	202195493	202195493	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_139163.2	-1	validated	p.L196	0.919	113	0%	53	34%	2	0%	-	-	-	NULL
SP140	11262	genome.wustl.edu	37	2	231176283	231176283	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_007237.4	+1	validated	p.I826	0.990	382	0%	144	28.5%	7	0%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
SYN2	6854	genome.wustl.edu	37	3	12211333	12211333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	ENST00000341648	+1	known	p.S343N	0.876	179	0%	434	75.8%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
ROBO2	6092	genome.wustl.edu	37	3	77657009	77657009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_002942.3	+1	reviewed	p.G1066V	1.000	120	0%	57	91.2%	1	100%	benign(0.305)	deleterious(0.02)	deleterious(0.478)	NULL
XRN1	54464	genome.wustl.edu	37	3	142151540	142151540	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_019001.3	-1	validated	p.R91*	1.000	43	0%	53	30.2%	1	0%	-	-	-	HMMPfam_XRN_N
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	byCluster	TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_006218.2	+1	reviewed	p.H1047L	1.000	161	0%	170	98.2%	58	96.5%	possibly_damaging(0.815)	tolerated(1)	neutral(0.307)	HMMSmart_PI3Kc,superfamily_Kinase_like
CPN2	1370	genome.wustl.edu	37	3	194062821	194062821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001080513.2	-1	validated	p.A204V	0.000	46	0%	31	74.2%	0	-	benign(0.059)	tolerated(0.33)	neutral(0.028)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like
STIM2	57620	genome.wustl.edu	37	4	27010441	27010441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_020860.3	+1	reviewed	p.Q523K	1.000	159	0%	100	47%	15	66.6%	possibly_damaging(0.94)	tolerated(0.1)	deleterious(0.671)	NULL
ABCG2	9429	genome.wustl.edu	37	4	89013410	89013410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_004827.2	-1	reviewed	p.L648F	0.341	168	0%	92	16.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MARCH6	10299	genome.wustl.edu	37	5	10391774	10391774	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_005885.2	+1	provisional	p.E233Q	1.000	54	0%	64	20.3%	196	5.6%	probably_damaging(0.964)	tolerated(0.34)	neutral(0.429)	NULL
TRIO	7204	genome.wustl.edu	37	5	14498717	14498717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_007118.2	+1	validated	p.S2767L	0.812	56	0%	39	30.8%	49	20.4%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PCDHGA6	56109	genome.wustl.edu	37	5	140753893	140753893	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_018919.2	+1	reviewed	p.N81	0.056	86	0%	22	86.4%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150925568	150925568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001447.2	-1	reviewed	p.S1707L	0.994	330	0%	76	34.2%	0	-	benign(0.271)	deleterious(0.01)	neutral(0.435)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HIST1H3B	8358	genome.wustl.edu	37	6	26032194	26032194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_003537.3	-1	reviewed	p.A32D	1.000	70	0%	55	16.4%	1	0%	benign(0.007)	-	-	superfamily_Histone-fold
CFB	629	genome.wustl.edu	37	6	31914812	31914812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001710.5	+1	reviewed	p.F109L	1.000	74	0%	69	75.4%	115	81.7%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
TFAP2B	7021	genome.wustl.edu	37	6	50805765	50805765	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_003221.3	+1	reviewed	p.R300fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_TF_AP-2
PKHD1	5314	genome.wustl.edu	37	6	51799029	51799029	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_138694.3	-1	reviewed	p.S2000	0.000	616	0%	430	29.8%	0	-	-	-	-	HMMPfam_G8
ZNF292	23036	genome.wustl.edu	37	6	87970705	87970705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_015021.1	+1	validated	p.T2453M	0.177	83	0%	46	41.3%	15	46.6%	benign(0.357)	deleterious(0.01)	deleterious(0.519)	NULL
TULP4	56995	genome.wustl.edu	37	6	158922728	158922766	+	In_Frame_Del	DEL	TCCCTGAGAACAGCCCACCTTGTACCGTGAACATCCCTA	TCCCTGAGAACAGCCCACCTTGTACCGTGAACATCCCTA	-	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	TCCCTGAGAACAGCCCACCTTGTACCGTGAACATCCCTA	TCCCTGAGAACAGCCCACCTTGTACCGTGAACATCCCTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_020245.3	+1	validated	p.PENSPPCTVNIPI679in_frame_del	0.101:0.958:0.973:0.569:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.000:1.000:1.000:0.001:0.999:1.000:1.000:1.000:1.000:0.761:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.963:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88965248	88965248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_181646.2	+1	provisional	p.Q984H	0.000	367	0%	311	55%	0	-	possibly_damaging(0.677)	deleterious(0.03)	deleterious(0.605)	NULL
TAS2R39	259285	genome.wustl.edu	37	7	142881421	142881421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_176881.2	+1	provisional	p.P304T	0.973	169	0%	95	42.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TAS2R,superfamily_SSF81321
POLB	5423	genome.wustl.edu	37	8	42206558	42206558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_002690.1	+1	provisional	p.E71K	1.000	92	0%	99	11.1%	44	2.2%	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMSmart_POLXc,HMMSmart_HhH1,superfamily_DNApol_B_N_like
FZD6	8323	genome.wustl.edu	37	8	104312372	104312372	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_003506.3	+1	reviewed	p.L13V	0.005	35	0%	18	55.6%	10	30%	probably_damaging(0.98)	tolerated(0.32)	neutral(0.448)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110457796	110457796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_177531.4	+1	validated	p.T1900A	0.000	69	0%	97	14.4%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
ADCY8	114	genome.wustl.edu	37	8	132052131	132052131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001115.2	-1	reviewed	p.R150Q	1.000	49	0%	26	46.2%	0	-	possibly_damaging(0.947)	tolerated(0.15)	deleterious(0.631)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6012536	6012536	+	Silent	SNP	G	G	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_012416.2	-1	validated	p.L1024	1.000	113	0%	92	37%	6	16.6%	-	-	-	NULL
ANXA7	310	genome.wustl.edu	37	10	75142995	75142995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_004034.2	-1	reviewed	p.E308Q	1.000	181	0%	68	23.5%	215	20.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
OR51M1	390059	genome.wustl.edu	37	11	5411428	5411428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001004756.2	+1	validated	p.M267T	0.693	260	0%	137	45.3%	0	-	possibly_damaging(0.84)	deleterious(0.02)	deleterious(0.705)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC120824	120824	genome.wustl.edu	37	11	48997480	48997480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	XM_062300.6	-1	model	p.K310M	0.831	84	0%	68	11.8%	0	-	-	-	-	NULL
BEST1	7439	genome.wustl.edu	37	11	61725743	61725743	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001139443.1	+1	reviewed	p.Q220H	1.000	65	0%	27	51.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bestrophin
TIGD3	220359	genome.wustl.edu	37	11	65124581	65124581	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_145719.2	+1	reviewed	p.A434	0.999	32	0%	22	22.7%	4	0%	-	-	-	NULL
SCYL1	57410	genome.wustl.edu	37	11	65298136	65298136	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_020680.3	+1	reviewed	p.E296*	1.000	34	0%	33	30.3%	63	6.3%	-	-	-	superfamily_ARM repeat
LTBP3	4054	genome.wustl.edu	37	11	65320666	65320666	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001130144.2	-1	reviewed	p.G344	0.999	8	0.000	22	0.273	83	33.7%	-	-	-	superfamily_TB module/8-cys domain
TRIM49	57093	genome.wustl.edu	37	11	89531407	89531407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_020358.2	-1	reviewed	p.A417G	0.000	611	0%	420	28.1%	0	-	benign(0.005)	tolerated(0.78)	neutral(0.001)	HMMPfam_SPRY
KLHDC5	57542	genome.wustl.edu	37	12	27950922	27950922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_020782.1	+1	validated	p.H447Q	0.999	135	0%	127	46.5%	38	60.5%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	superfamily_Galactose oxidase central domain
RASSF3	283349	genome.wustl.edu	37	12	65088637	65088637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_178169.2	+1	provisional	p.T221K	0.221	186	0%	130	73.8%	8	50%	benign(0.003)	tolerated(0.14)	neutral(0.249)	NULL
RAD9B	144715	genome.wustl.edu	37	12	110956531	110956531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_152442.3	+1	validated	p.D216H	1.000	204	0%	145	41.4%	0	-	probably_damaging(0.954)	tolerated(0.16)	neutral(0.457)	HMMPfam_Rad9
CCDC63	160762	genome.wustl.edu	37	12	111291332	111291332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_152591.1	+1	provisional	p.R45W	0.641	63	0%	37	67.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANAPC5	51433	genome.wustl.edu	37	12	121747634	121747634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_016237.4	-1	reviewed	p.S642R	0.969	87	0%	63	11.1%	307	18.8%	benign(0)	tolerated(0.55)	neutral(0.007)	superfamily_TPR-like
ATP12A	479	genome.wustl.edu	37	13	25262575	25262575	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001676.5	+1	reviewed	p.S116C	1.000	646	0%	362	13%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
PDS5B	23047	genome.wustl.edu	37	13	33344497	33344497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_015032.3	+1	reviewed	p.G1288V	0.999	263	0%	98	20.4%	14	21.4%	possibly_damaging(0.455)	tolerated(0.16)	neutral(0.208)	NULL
SLC7A8	23428	genome.wustl.edu	37	14	23598870	23598870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_012244.2	-1	validated	p.R418C	1.000	350	0%	190	66.8%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EDC4	23644	genome.wustl.edu	37	16	67915236	67915236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_014329.3	+1	validated	p.P902L	0.998	205	0%	88	33%	52	28.8%	possibly_damaging(0.521)	tolerated(0.22)	neutral(0.217)	NULL
ZFHX3	463	genome.wustl.edu	37	16	72992268	72992269	+	Frame_Shift_Ins	INS	-	-	GTCA	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_006885.3	-1	reviewed	p.E592fs	1.000:0.920	-	-	-	-	-	-	-	-	-	NULL
PAFAH1B1	5048	genome.wustl.edu	37	17	2577385	2577385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_000430.3	+1	reviewed	p.E235K	1.000	93	0%	38	47.4%	46	54.3%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TP53	7157	genome.wustl.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	rs121912651	byCluster	TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_000546.4	-1	reviewed	p.R248W	1.000	114	0%	25	92%	67	92.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
ACTG1	71	genome.wustl.edu	37	17	79479111	79479111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001614.2	-1	reviewed	p.K61E	1.000	21	0.000	7	0.571	1598	95.7%	benign(0.011)	-	-	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,superfamily_Actin-like ATPase domain
ZNF532	55205	genome.wustl.edu	37	18	56585622	56585622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_018181.4	+1	validated	p.D35N	1.000	281	0%	237	94.5%	23	100%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
RTTN	25914	genome.wustl.edu	37	18	67742586	67742586	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_173630.3	-1	validated	e33+2	1.000	137	0%	83	10.8%	0	-	-	-	-	-
ZNF99	7652	genome.wustl.edu	37	19	22942361	22942361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001080409.1	-1	provisional	p.C138F	0.505	170	0%	175	19.4%	0	-	probably_damaging(0.953)	tolerated(0.45)	neutral(0.409)	NULL
ZNF321P	399669	genome.wustl.edu	37	19	53432625	53432625	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_203307.2	-1	validated	p.A9G	0.000	408	0%	141	20.6%	6	16.6%	benign(0)	tolerated(1)	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34037339	34037339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_003895.3	-1	validated	p.D730Y	1.000	98	0%	62	37.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
PIWIL3	440822	genome.wustl.edu	37	22	25144907	25144907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_001008496.2	-1	validated	p.L472F	0.017	264	0%	173	54.9%	1	100%	possibly_damaging(0.865)	deleterious(0.01)	deleterious(0.741)	NULL
STS	412	genome.wustl.edu	37	X	7268184	7268184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_000351.4	+1	reviewed	p.P545R	0.823	97	0%	52	19.2%	5	20%	possibly_damaging(0.864)	tolerated(0.05)	deleterious(0.680)	superfamily_Alkaline_phosphatase_core
APEX2	27301	genome.wustl.edu	37	X	55029468	55029468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_014481.2	+1	reviewed	p.E166K	1.000	42	0%	15	40%	52	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ABCB7	22	genome.wustl.edu	37	X	74282207	74282207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_004299.3	-1	reviewed	p.L632I	1.000	167	0%	53	13.2%	25	8%	benign(0.218)	tolerated(0.81)	neutral(0.022)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
MORC4	79710	genome.wustl.edu	37	X	106219826	106219826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_024657.4	-1	reviewed	p.T382N	1.000	232	0%	103	23.3%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119388181	119388181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_006777.3	+1	reviewed	p.S304C	1.000	277	0%	113	24.8%	4	100%	benign(0.063)	tolerated(0.12)	neutral(0.265)	NULL
GPR112	139378	genome.wustl.edu	37	X	135488086	135488086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_153834.3	+1	reviewed	p.R2964G	0.997	303	0%	152	13.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_7tm_2
TKTL1	8277	genome.wustl.edu	37	X	153557963	153557963	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0L9-01A-11W-A062-09	TCGA-AP-A0L9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a85a853-069c-4232-8ebc-b4cb0bbd15d5	7fd7206a-9aaa-4d91-be23-cdc8ac722e45	NM_012253.3	+1	validated	p.S572	0.000	197	0%	86	75.6%	204	100%	-	-	-	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like