Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain ENSG00000245549 0 genome.wustl.edu 37 1 16950404 16950404 + RNA SNP C C T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea ENST00000501442 +1 novel NULL 0.979 42 2.4% 30 30% - - - - - - COL11A1 1301 genome.wustl.edu 37 1 103412454 103412454 + Missense_Mutation SNP C C T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_080629.2 -1 reviewed p.R1088H 1.000 13 0% 23 30.4% - - unknown(0) deleterious(0) - NULL HRNR 388697 genome.wustl.edu 37 1 152191477 152191477 + Missense_Mutation SNP G G T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_001009931.1 -1 validated p.H876Q 0.001 85 0% 83 28.9% - - unknown(0) - - NULL NEK7 140609 genome.wustl.edu 37 1 198222179 198222179 + Silent SNP C C A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_133494.2 +1 validated p.R23 1.000 31 0% 46 43.5% - - - - - superfamily_Kinase_like PROX1 5629 genome.wustl.edu 37 1 214178606 214178606 + Silent SNP C C T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_002763.3 +1 provisional p.S608 0.201 56 0% 58 41.4% - - - - - HMMPfam_Prox1,superfamily_Homeodomain_like FMN2 56776 genome.wustl.edu 37 1 240255569 240255571 + In_Frame_Del DEL GGC GGC - rs140531536 byCluster;by1000genomes TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 GGC GGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_020066.4 +1 validated p.G57in_frame_del 0.957:0.122:0.017 - - - - - - - - - NULL ASXL2 55252 genome.wustl.edu 37 2 25973229 25973229 + Missense_Mutation SNP G G A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_018263.4 -1 validated p.P399L 1.000 69 0% 136 39% - - unknown(0) tolerated(0.41) - NULL PPP1R21 129285 genome.wustl.edu 37 2 48667952 48667954 + RNA DEL GCG GCG - rs71995941 TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 GCG GCG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NR_024188.1 +1 validated NULL 0.983:0.995:1.000 - - - - - - - - - - SLC39A10 57181 genome.wustl.edu 37 2 196545296 196545296 + Missense_Mutation SNP G G A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_001127257.1 +1 validated p.R177H 0.088 22 0% 31 19.4% - - benign(0.001) tolerated(0.06) neutral(0.323) NULL ATG4B 23192 genome.wustl.edu 37 2 242592988 242592988 + Missense_Mutation SNP C C G novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_013325.4 +1 reviewed p.I82M 1.000 43 0% 32 37.5% - - benign(0.024) tolerated(0.79) neutral(0.002) HMMPfam_Peptidase_C54 SCN11A 11280 genome.wustl.edu 37 3 38913124 38913124 + Missense_Mutation SNP C C T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_014139.2 -1 validated p.V1191I 1.000 58 0% 55 52.7% - - benign(0) tolerated(1) - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels BSN 8927 genome.wustl.edu 37 3 49690325 49690325 + Silent SNP G G A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_003458.3 +1 reviewed p.A1112 0.174 23 0% 13 30.8% - - - - - NULL PIK3CA 5290 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G rs121913279 byCluster TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_006218.2 +1 reviewed p.H1047R 1.000 45 0% 78 61.5% - - possibly_damaging(0.926) deleterious(0.03) deleterious(0.739) HMMSmart_PI3Kc,superfamily_Kinase_like PRDM9 56979 genome.wustl.edu 37 5 23521146 23521146 + Silent SNP G G A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_020227.2 +1 provisional p.A122 0.000 70 0% 93 29% - - - - - NULL OR9A2 135924 genome.wustl.edu 37 7 142723328 142723328 + Missense_Mutation SNP G G C novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_001001658.1 -1 provisional p.R298G 0.000 32 0% 43 41.9% - - benign(0) deleterious(0.04) neutral(0.349) superfamily_Family A G protein-coupled receptor-like DNM1L 10059 genome.wustl.edu 37 12 32860333 32860333 + Missense_Mutation SNP C C T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_012062.3 +1 reviewed p.H95Y 1.000 36 0% 77 42.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Dynamin_N,HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases SCN8A 6334 genome.wustl.edu 37 12 52099316 52099316 + Missense_Mutation SNP A A G novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_014191.2 +1 reviewed p.Q417R 1.000 135 0% 144 32.6% - - probably_damaging(0.986) deleterious(0.01) deleterious(0.840) superfamily_Voltage-gated potassium channels GPC6 10082 genome.wustl.edu 37 13 94680088 94680088 + Missense_Mutation SNP G G A rs192508779 by1000genomes TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_005708.3 +1 reviewed p.V273I 1.000 51 0% 58 44.8% - - possibly_damaging(0.68) tolerated(0.16) neutral(0.302) HMMPfam_Glypican,PatternScan_GLYPICAN NDN 4692 genome.wustl.edu 37 15 23931977 23931977 + Missense_Mutation SNP C C T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_002487.2 -1 reviewed p.G130S 0.917 29 0% 34 47.1% - - possibly_damaging(0.947) tolerated(0.1) deleterious(0.677) HMMPfam_MAGE ISLR2 57611 genome.wustl.edu 37 15 74425447 74425447 + Missense_Mutation SNP G G A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_001130136.1 +1 validated p.D118N 1.000 25 0% 27 29.6% - - probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_LRR_1,superfamily_SSF52058 RHOT2 89941 genome.wustl.edu 37 16 722303 722303 + Silent SNP C C T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_138769.1 +1 provisional p.S415 0.010 26 0% 29 34.5% - - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases TP53 7157 genome.wustl.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_000546.4 -1 reviewed p.R273H 0.864 66 0% 69 62.3% - - possibly_damaging(0.936) deleterious(0.01) deleterious(0.787) superfamily_p53-like transcription factors,HMMPfam_P53 NSRP1 84081 genome.wustl.edu 37 17 28511670 28511670 + Missense_Mutation SNP A A C novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_032141.2 +1 validated p.N219H 0.938 21 0% 51 43.1% - - benign(0.007) deleterious(0.02) neutral(0.383) NULL P2RY11 5032 genome.wustl.edu 37 19 10224576 10224576 + Missense_Mutation SNP G G T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_002566.4 +1 reviewed p.R96L 0.297 28 0% 47 27.7% - - benign(0.309) tolerated(0.4) neutral(0.113) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SYT3 84258 genome.wustl.edu 37 19 51128447 51128447 + Missense_Mutation SNP G G A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_032298.2 -1 validated p.P560L 1.000 28 0% 18 55.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_C2,superfamily_C2_CaLB LILRB5 10990 genome.wustl.edu 37 19 54761024 54761024 + Silent SNP G G A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_001081442.1 -1 reviewed p.L11 0.203 72 0% 39 79.5% - - - - - NULL SH3KBP1 30011 genome.wustl.edu 37 X 19626155 19626155 + Silent SNP G G A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_031892.2 -1 reviewed p.I302 0.945 45 0% 66 30.3% - - - - - HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain FAM47A 158724 genome.wustl.edu 37 X 34149264 34149264 + Nonsense_Mutation SNP C C A novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_203408.3 -1 validated p.E378* 0.505 31 0% 40 27.5% - - - - - NULL WAS 7454 genome.wustl.edu 37 X 48542706 48542706 + Missense_Mutation SNP C C T rs132630269 TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_000377.2 +1 reviewed p.A56V 0.998 55 0% 52 44.2% - - possibly_damaging(0.601) deleterious(0.01) deleterious(0.614) HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729 IL13RA1 3597 genome.wustl.edu 37 X 117925740 117925740 + Missense_Mutation SNP G G T novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_001560.2 +1 reviewed p.D403Y 1.000 94 0% 101 36.6% - - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL GPR112 139378 genome.wustl.edu 37 X 135445745 135445745 + Missense_Mutation SNP A A G novel TCGA-AX-A1CP-01A-11D-A135-09 TCGA-AX-A1CP-10A-01D-A135-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 98e8a060-b5bc-4e51-a8d5-131fc91bb403 d4f648d4-9a76-4dab-ad0a-7bb2047375ea NM_153834.3 +1 reviewed p.I2463V 0.882 58 0% 75 29.3% - - benign(0.209) tolerated(0.13) neutral(0.273) NULL