Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain ARID1A 8289 genome.wustl.edu 37 1 27097802 27097802 + Nonsense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_006015.4 +1 reviewed p.Q1131* 1.000 75 0% 69 40.6% 3 33.3% - - - NULL CRNN 49860 genome.wustl.edu 37 1 152382933 152382933 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_016190.2 -1 reviewed p.E209K 0.194 503 0% 748 43.6% 0 - probably_damaging(0.996) tolerated(0.12) deleterious(0.722) NULL GORAB 92344 genome.wustl.edu 37 1 170521202 170521202 + Missense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_152281.2 +1 reviewed p.D262N 1.000 64 0% 126 12.7% 4 0% possibly_damaging(0.943) tolerated(0.12) deleterious(0.648) NULL SEC16B 89866 genome.wustl.edu 37 1 177929518 177929518 + Missense_Mutation SNP T T A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_033127.2 -1 validated p.E319D 0.911 115 0% 134 38.1% 0 - benign(0.427) tolerated(0.44) neutral(0.152) NULL PLA2G4A 5321 genome.wustl.edu 37 1 186839609 186839609 + Missense_Mutation SNP C C A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_024420.2 +1 reviewed p.R26S 0.956 136 0% 260 41.5% 1 100% benign(0.069) deleterious(0.01) neutral(0.410) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) MARK1 4139 genome.wustl.edu 37 1 220809358 220809358 + Missense_Mutation SNP C C G novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_018650.3 +1 validated p.T487S 0.366 98 0% 326 41.1% 1 100% benign(0) tolerated(0.43) neutral(0.013) NULL CCDC164 92749 genome.wustl.edu 37 2 26678039 26678039 + Missense_Mutation SNP A A T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_145038.2 +1 validated p.S702C 0.000 45 0% 19 26.3% 58 63.7% possibly_damaging(0.502) deleterious(0.04) deleterious(0.516) NULL CCDC150 284992 genome.wustl.edu 37 2 197597262 197597262 + Nonsense_Mutation SNP T T G novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001080539.1 +1 provisional p.Y1094* 0.002 107 0% 217 38.2% 2 0% - - - NULL ASIC4 55515 genome.wustl.edu 37 2 220396780 220396780 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_018674.4 +1 reviewed p.P389L 1.000 54 0% 43 46.5% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_ASC SCN10A 6336 genome.wustl.edu 37 3 38802218 38802218 + Nonsense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_006514.2 -1 validated p.R302* 0.000 96 0% 115 47.8% 0 - - - - HMMPfam_Ion_trans,superfamily_SSF81324 SCN11A 11280 genome.wustl.edu 37 3 38950678 38950678 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_014139.2 -1 validated p.R370H 0.030 155 0% 408 43.4% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels MAP4 4134 genome.wustl.edu 37 3 47951630 47951630 + Silent SNP A A G novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_030884.3 -1 reviewed p.N34 0.000 103 0% 227 44.9% 1 100% - - - NULL PIK3CA 5290 genome.wustl.edu 37 3 178916933 178916933 + Missense_Mutation SNP A A G novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_006218.2 +1 reviewed p.N107S 1.000 62 0% 152 34.2% 0 - benign(0.015) tolerated(0.2) neutral(0.050) HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236 KIAA0922 23240 genome.wustl.edu 37 4 154544192 154544192 + Silent SNP G G T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_015196.3 +1 validated p.G1333 0.922 43 0% 66 40.9% 2 50% - - - NULL PIK3R1 5295 genome.wustl.edu 37 5 67589615 67589629 + In_Frame_Del DEL AGTCGAGAATATGAT AGTCGAGAATATGAT - novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 AGTCGAGAATATGAT AGTCGAGAATATGAT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_181523.1 +1 reviewed p.SREYD460in_frame_del 1.000:0.999:0.929:0.484:0.483:0.234:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL MFAP3 4238 genome.wustl.edu 37 5 153429189 153429189 + RNA SNP C C A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NR_024152.1 +1 validated NULL 0.000 56 0% 61 36.1% 0 - - - - - EXOC2 55770 genome.wustl.edu 37 6 633084 633084 + Missense_Mutation SNP G G T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_018303.4 -1 reviewed p.T51K 1.000 163 0% 160 40% 2 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_TIG,superfamily_Ig_E-set HIST1H2AG 8969 genome.wustl.edu 37 6 27101174 27101174 + Silent SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_021064.4 +1 reviewed p.V108 0.988 111 0% 100 40% 0 - - - - HMMSmart_SM00414,superfamily_Histone-fold DNAH8 1769 genome.wustl.edu 37 6 38718264 38718265 + Frame_Shift_Ins INS - - TGGA novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001371.2 +1 validated p.A221fs 0.966:1.000 - - - - - - - - - HMMPfam_DHC_N1 CSMD1 64478 genome.wustl.edu 37 8 4277514 4277514 + Missense_Mutation SNP A A C novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_033225.5 -1 validated p.F126V 1.000 116 0% 178 54.5% 0 - benign(0.206) tolerated(0.45) neutral(0.032) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain NRG1 3084 genome.wustl.edu 37 8 32505615 32505615 + Missense_Mutation SNP G G A rs34822181 byCluster;byFrequency;by1000genomes TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_013959.3 +1 reviewed p.A127T 1.000 168 0% 406 31.3% 0 - benign(0) tolerated(0.2) neutral(0.049) NULL TRPM3 80036 genome.wustl.edu 37 9 73150942 73150942 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001007471.2 -1 reviewed p.R1684Q 1.000 211 0% 167 40.7% 0 - possibly_damaging(0.559) deleterious(0.02) deleterious(0.574) NULL ITGA8 8516 genome.wustl.edu 37 10 15730038 15730038 + Splice_Site SNP C C A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_003638.1 -1 provisional e3-1 1.000 178 0% 239 46.4% 0 - - - - - KIAA1217 56243 genome.wustl.edu 37 10 24809086 24809086 + Missense_Mutation SNP G G T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_019590.3 +1 validated p.D738Y 1.000 123 0% 77 23.4% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PTEN 5728 genome.wustl.edu 37 10 89692904 89692904 + Nonsense_Mutation SNP C C T rs121909224 byCluster TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 ENST00000371953 +1 known p.R130* 1.000 177 0% 498 42.4% 1 100% - - - HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89692961 89692961 + Nonsense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 ENST00000371953 +1 known p.Q149* 1.000 141 0% 322 43.5% 2 0% - - - HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II TDRD1 56165 genome.wustl.edu 37 10 115961251 115961251 + Silent SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_198795.1 +1 reviewed p.I204 0.136 48 0% 71 38% 1 0% - - - HMMPfam_zf-MYND,PatternScan_ZF_MYND_1 ENSG00000166007 0 genome.wustl.edu 37 11 55062037 55062038 + In_Frame_Ins INS - - TGAGTA novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 ENST00000309470 -1 known p.229in_frame_insIL 0.033:0.033 - - - - - - - - - NULL SLC22A8 9376 genome.wustl.edu 37 11 62782228 62782228 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_004254.3 -1 reviewed p.G68E 0.926 275 0% 208 43.3% 0 - probably_damaging(0.994) tolerated(0.24) deleterious(0.489) HMMPfam_MFS_1 KRAS 3845 genome.wustl.edu 37 12 25398284 25398284 + Missense_Mutation SNP C C A rs121913529 byCluster TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_033360.2 -1 reviewed p.G12V 1.000 181 0% 290 35.2% 3 33.3% benign(0.048) deleterious(0) neutral(0.448) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases ITPR2 3709 genome.wustl.edu 37 12 26572096 26572096 + Silent SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_002223.2 -1 validated p.T2332 0.990 82 0% 131 40.5% 1 0% - - - HMMPfam_Ion_trans CKAP4 10970 genome.wustl.edu 37 12 106632986 106632986 + Missense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_006825.3 -1 validated p.S542L 0.996 113 0% 51 43.1% 45 42.2% probably_damaging(0.998) tolerated(0.08) deleterious(0.774) NULL ZCCHC8 55596 genome.wustl.edu 37 12 122958508 122958508 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_017612.2 -1 validated p.V554I 0.585 93 0% 80 38.8% 14 42.8% benign(0.366) deleterious(0) deleterious(0.561) NULL FRY 10129 genome.wustl.edu 37 13 32698450 32698450 + Missense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_023037.2 +1 validated p.M164I 1.000 50 0% 100 31% 0 - benign(0.053) tolerated(0.29) neutral(0.033) NULL SETDB2 83852 genome.wustl.edu 37 13 50055186 50055186 + Missense_Mutation SNP C C A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_031915.2 +1 validated p.Q376K 1.000 199 0% 297 34.7% 4 25% benign(0) tolerated(1) - HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain ING1 3621 genome.wustl.edu 37 13 111372127 111372127 + Nonsense_Mutation SNP G G T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_005537.3 +1 reviewed p.E373* 1.000 85 0% 27 48.1% 23 47.8% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD BAG5 9529 genome.wustl.edu 37 14 104026329 104026329 + Silent SNP G G C novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001015049.1 -1 reviewed p.T432 0.007 88 0% 55 29.1% 15 33.3% - - - HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain FAM92A1P1 729073 genome.wustl.edu 37 15 41456051 41456051 + Missense_Mutation SNP G G T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 ENST00000287660 +1 known p.A128S 1.000 175 0% 454 39.9% 5 0% - - - HMMPfam_DUF1208 PRTG 283659 genome.wustl.edu 37 15 55921130 55921130 + Missense_Mutation SNP T T C novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_173814.4 -1 validated p.N899S 1.000 143 0% 261 36.8% 0 - probably_damaging(0.987) tolerated(0.1) deleterious(0.723) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like CTCF 10664 genome.wustl.edu 37 16 67645273 67645273 + Nonsense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_006565.2 +1 reviewed p.Q180* 1.000 97 0% 141 36.2% 2 0% - - - NULL ZBTB4 57659 genome.wustl.edu 37 17 7366743 7366743 + Nonsense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001128833.1 -1 validated p.R520* 0.993 117 0% 61 44.3% 10 30% - - - NULL ITGA3 3675 genome.wustl.edu 37 17 48166613 48166613 + Missense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_005501.2 +1 reviewed p.R1062Q 0.038 73 1.4% 51 51% 21 42.8% probably_damaging(0.978) tolerated(0.45) neutral(0.432) NULL BRIP1 83990 genome.wustl.edu 37 17 59858343 59858343 + Missense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_032043.1 -1 reviewed p.A551V 1.000 158 0% 316 44% 1 0% probably_damaging(0.999) tolerated(0.49) deleterious(0.501) NULL SSTR2 6752 genome.wustl.edu 37 17 71165967 71165967 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001050.2 +1 reviewed p.S170F 1.000 83 0% 50 38% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LMAN1 3998 genome.wustl.edu 37 18 57006155 57006155 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_005570.3 -1 reviewed p.R329Q 1.000 180 0% 465 39.4% 15 46.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL MAST3 23031 genome.wustl.edu 37 19 18233549 18233553 + Frame_Shift_Del DEL CTCCA CTCCA - novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 CTCCA CTCCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_015016.1 +1 validated p.S101fs 1.000:1.000:1.000:1.000:1.000 - - - - - - - - - HMMPfam_DUF1908 LGI4 163175 genome.wustl.edu 37 19 35616204 35616204 + Missense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_139284.2 -1 validated p.R503C 0.884 78 0% 32 46.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RYR1 6261 genome.wustl.edu 37 19 38956903 38956903 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_000540.2 +1 reviewed p.R1015C 0.964 22 0% 42 47.6% 0 - probably_damaging(0.998) - - HMMPfam_RyR CYP2B7P1 1556 genome.wustl.edu 37 19 41447340 41447340 + RNA SNP G G A rs28399497 byCluster;byFrequency TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NR_001278.1 +1 provisional NULL 0.410 100 0% 270 21.9% 0 - benign(0) deleterious(0.01) neutral(0.406) - SLC8A2 6543 genome.wustl.edu 37 19 47941145 47941145 + Silent SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_015063.2 -1 validated p.C657 0.998 133 0% 111 39.6% 0 - - - - NULL EIF6 3692 genome.wustl.edu 37 20 33868572 33868572 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_002212.2 -1 reviewed p.R85H 1.000 260 0% 94 43.6% 157 29.9% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_eIF-6,HMMSmart_SM00654,superfamily_Pentein DHX35 60625 genome.wustl.edu 37 20 37652346 37652346 + Missense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_021931.2 +1 reviewed p.R536H 1.000 116 0% 192 39.6% 0 - benign(0.364) deleterious(0.05) neutral(0.461) HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases DIP2A 23181 genome.wustl.edu 37 21 47931424 47931424 + Silent SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_015151.3 +1 reviewed p.P333 0.013 52 0% 67 37.3% 0 - - - - NULL CCT8L2 150160 genome.wustl.edu 37 22 17072267 17072267 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_014406.4 -1 validated p.V392I 0.917 127 0% 48 39.6% 0 - benign(0.043) tolerated(1) neutral(0.003) HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like GTPBP1 9567 genome.wustl.edu 37 22 39111959 39111959 + Missense_Mutation SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_004286.4 +1 reviewed p.A118T 1.000 85 0% 115 83.5% 12 75% benign(0.022) tolerated(0.54) neutral(0.009) NULL TNRC6B 23112 genome.wustl.edu 37 22 40661483 40661483 + Nonsense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_015088.2 +1 validated p.R417* 1.000 154 0% 237 84.8% 1 100% - - - NULL EFCAB6 64800 genome.wustl.edu 37 22 43950818 43950818 + Silent SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_022785.2 -1 validated p.T1193 0.000 182 0% 142 37.3% 9 55.5% - - - HMMSmart_SM00054,superfamily_EF-hand ENSG00000211459 0 genome.wustl.edu 37 MT 874 874 + RNA SNP G G A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 ENST00000389680 +1 known NULL NULL 88 0% 115 53.9% 2821 43.6% - - - - PLCXD1 55344 genome.wustl.edu 37 X 205502 205502 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_018390.3 +1 reviewed p.T77M 0.661 210 0% 40 40% 3 66.6% probably_damaging(0.98) deleterious(0.04) deleterious(0.773) superfamily_PLC-like_Pdiesterase_TIM-brl SHROOM4 57477 genome.wustl.edu 37 X 50350500 50350500 + Silent SNP A A G novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_020717.3 -1 reviewed p.D1214 0.001 121 0% 186 41.9% 0 - - - - HMMPfam_ASD2 PCDH19 57526 genome.wustl.edu 37 X 99663256 99663256 + Missense_Mutation SNP C C T novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001105243.1 -1 reviewed p.V114M 1.000 125 0% 31 58.1% 0 - benign(0.007) tolerated(0.4) neutral(0.016) HMMSmart_CA,superfamily_Cadherin PAK3 5063 genome.wustl.edu 37 X 110416268 110416268 + Missense_Mutation SNP C C A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001128168.1 +1 reviewed p.D299E 1.000 164 0% 533 39.2% 0 - benign(0.406) deleterious(0) deleterious(0.575) superfamily_Kinase_like MCF2 4168 genome.wustl.edu 37 X 138672082 138672082 + Missense_Mutation SNP T T G novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_001099855.1 -1 reviewed p.D821A 1.000 166 0% 314 42.4% 0 - benign(0.07) tolerated(0.37) neutral(0.024) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 MAGEA5 4104 genome.wustl.edu 37 X 151283933 151283933 + Missense_Mutation SNP C C A novel TCGA-BG-A0M9-01A-21W-A10C-09 TCGA-BG-A0M9-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f5f7329b-47bb-4a5c-9358-c6cdf82984ec b93411b1-b744-4dd4-b47f-f7a6c5e3ba18 NM_021049.3 -1 reviewed p.G27V 0.000 64 0% 10 50% 0 - - - - NULL