Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain AGRN 375790 genome.wustl.edu 37 1 979730 979730 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_198576.2 +1 validated p.G722V 0.994 11 0% 88 36.4% 68 48.5% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_Kazal_1,HMMSmart_KAZAL,superfamily_SSF100895 SRM 6723 genome.wustl.edu 37 1 11118893 11118893 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_003132.2 -1 validated p.P115 0.191 9 0.000 51 0.392 95 48.4% - - - HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases AGTRAP 57085 genome.wustl.edu 37 1 11808635 11808635 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_020350.4 +1 reviewed p.R111Q 0.999 27 0% 107 39.3% 102 44.1% unknown(0) - - HMMPfam_AGTRAP,HMMSmart_SM00805 WNT4 54361 genome.wustl.edu 37 1 22456215 22456215 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 ENST00000415567 -1 known p.R44W 0.580 36 0% 199 38.2% 1 0% - - - HMMPfam_wnt,HMMSmart_SM00097 ARID1A 8289 genome.wustl.edu 37 1 27100176 27100176 + Nonsense_Mutation SNP C C A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_006015.4 +1 reviewed p.Y1324* 1.000 153 0% 230 38.3% 7 28.5% - - - NULL BAI2 576 genome.wustl.edu 37 1 32196473 32196473 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001703.2 -1 reviewed p.P1436 0.443 9 0.000 149 0.403 2 50% - - - NULL EDN2 1907 genome.wustl.edu 37 1 41945139 41945139 + Nonsense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001956.3 -1 reviewed p.R160* 0.002 93 0% 469 41.8% 103 43.6% - - - NULL LOC100130667 100130667 genome.wustl.edu 37 1 120165030 120165031 + In_Frame_Ins INS - - TCCTCAAGG rs113983233 byCluster;by1000genomes TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 XM_001715213.1 +1 model p.39in_frame_insRSS 0.001:0.001 - - - - - - - - - NULL TXNIP 10628 genome.wustl.edu 37 1 145441200 145441202 + In_Frame_Del DEL CAA CAA - novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 CAA CAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_006472.3 +1 validated p.N389in_frame_del 0.602:0.988:1.000 - - - - - - - - - NULL OR10J3 441911 genome.wustl.edu 37 1 159284020 159284020 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001004467.1 -1 provisional p.Q144K 0.001 158 0% 119 39.5% 0 - benign(0.005) tolerated(0.26) neutral(0.034) HMMPfam_7tm_1,superfamily_SSF81321 NFASC 23114 genome.wustl.edu 37 1 204943943 204943943 + Missense_Mutation SNP A A G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_015090.3 +1 reviewed p.E528G 1.000 185 0% 264 39.8% 1 0% possibly_damaging(0.952) deleterious(0.02) deleterious(0.778) HMMPfam_I-set,superfamily_SSF48726 OR2T3 343173 genome.wustl.edu 37 1 248636754 248636754 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001005495.1 +1 provisional p.V35M 0.000 751 0.1% 347 25.6% 0 - possibly_damaging(0.932) tolerated(0.12) deleterious(0.639) superfamily_SSF81321 SNTG2 54221 genome.wustl.edu 37 2 1168852 1168852 + Missense_Mutation SNP G G A rs145266598 by1000genomes TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_018968.3 +1 reviewed p.G192R 0.993 197 0% 329 22.8% 0 - probably_damaging(0.999) tolerated(0.34) deleterious(0.513) NULL NOL10 79954 genome.wustl.edu 37 2 10808815 10808815 + Silent SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_024894.2 -1 validated p.R167 1.000 172 0% 269 38.7% 6 66.6% - - - HMMSmart_SM00320,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase DNAH6 1768 genome.wustl.edu 37 2 84846941 84846941 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001370.1 +1 validated p.A1235 0.108 232 0% 162 39.5% 0 - - - - HMMPfam_DHC_N2 CHST10 9486 genome.wustl.edu 37 2 101010193 101010194 + Frame_Shift_Del DEL AA AA - novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 AA AA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_004854.3 -1 validated p.L195fs 0.212:1.000 - - - - - - - - - HMMPfam_Sulfotransfer_2 DNAH7 56171 genome.wustl.edu 37 2 196866449 196866449 + Missense_Mutation SNP G G C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_018897.2 -1 validated p.L375V 0.879 104 0% 167 43.7% 1 100% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL AQP12A 375318 genome.wustl.edu 37 2 241631576 241631576 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_198998.1 +1 provisional p.A70V 0.020 40 0% 120 40.8% 0 - benign(0) tolerated(1) - superfamily_MIP CXXC11 285093 genome.wustl.edu 37 2 242815402 242815402 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_173821.2 +1 validated p.P565 0.001 7 0.000 98 0.347 0 - - - - NULL CTNNB1 1499 genome.wustl.edu 37 3 41266113 41266113 + Missense_Mutation SNP C C T rs121913403 byCluster TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001098209.1 +1 reviewed p.S37F 1.000 87 0% 98 35.7% 82 32.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LRRIQ4 344657 genome.wustl.edu 37 3 169540100 169540100 + Nonsense_Mutation SNP A A T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001080460.1 +1 provisional p.K131* 0.000 55 0% 132 72.7% 1 100% - - - superfamily_SSF52058 ATP13A5 344905 genome.wustl.edu 37 3 193039579 193039579 + Silent SNP C C T rs138029126 by1000genomes TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_198505.2 -1 provisional p.S602 0.000 129 0% 128 69.5% 0 - - - - superfamily_SSF81660,superfamily_SSF81665 SLIT2 9353 genome.wustl.edu 37 4 20530586 20530586 + Nonsense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_004787.1 +1 provisional p.R493* 1.000 82 0% 224 43.8% 0 - - - - NULL UGT2B28 54490 genome.wustl.edu 37 4 70160509 70160509 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_053039.1 +1 provisional p.K524N 0.988 855 0% 486 34.4% 0 - benign(0.009) deleterious(0.05) neutral(0.346) HMMPfam_UDPGT FAT4 79633 genome.wustl.edu 37 4 126373506 126373506 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_024582.4 +1 validated p.V3779I 0.996 54 0% 109 47.7% 0 - possibly_damaging(0.782) tolerated(0.39) neutral(0.309) NULL SCLT1 132320 genome.wustl.edu 37 4 129857894 129857894 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_144643.2 -1 validated p.A582V 0.008 415 0% 488 37.1% 7 57.1% benign(0) tolerated(1) - NULL TRIM2 23321 genome.wustl.edu 37 4 154216614 154216614 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_015271.3 +1 validated p.A312 0.053 57 0% 96 37.5% 10 40% - - - HMMSmart_SM00502 FAT1 2195 genome.wustl.edu 37 4 187539091 187539091 + Nonsense_Mutation SNP G G C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_005245.3 -1 reviewed p.Y2883* 1.000 396 0% 440 35% 3 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like AHRR 57491 genome.wustl.edu 37 5 376756 376756 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_020731.3 +1 reviewed p.A96 0.001 45 0% 82 23.2% 2 50% - - - NULL ADAMTS12 81792 genome.wustl.edu 37 5 33561194 33561194 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_030955.2 -1 reviewed p.D1355N 1.000 184 0.5% 138 42.8% 0 - probably_damaging(0.99) tolerated(0.42) neutral(0.456) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat PIK3R1 5295 genome.wustl.edu 37 5 67589628 67589636 + In_Frame_Del DEL ATAGATTAT ATAGATTAT - novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 ATAGATTAT ATAGATTAT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_181523.1 +1 reviewed p.RLY465in_frame_del 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL PIK3R1 5295 genome.wustl.edu 37 5 67593407 67593407 + Missense_Mutation SNP T T C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_181523.1 +1 reviewed p.V718A 0.998 243 0% 247 39.7% 183 52.4% probably_damaging(0.998) tolerated(0.15) deleterious(0.716) superfamily_SH2 domain WDR36 134430 genome.wustl.edu 37 5 110428092 110428092 + Nonsense_Mutation SNP A A T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_139281.2 +1 reviewed p.K36* 0.000 30 0% 73 13.7% 1 0% - - - NULL PCDHA2 56146 genome.wustl.edu 37 5 140175145 140175145 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_018905.2 +1 reviewed p.S199L 0.003 91 0% 449 42.5% 0 - benign(0.001) tolerated(0.17) neutral(0.059) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA12 56137 genome.wustl.edu 37 5 140256177 140256177 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_018903.2 +1 reviewed p.V374M 0.866 121 0% 193 39.9% 0 - probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHB7 56129 genome.wustl.edu 37 5 140553205 140553205 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_018940.2 +1 reviewed p.S263 0.000 49 0% 249 36.5% 1 0% - - - HMMPfam_Cadherin,superfamily_Cadherin-like RNF145 153830 genome.wustl.edu 37 5 158585701 158585701 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_144726.1 -1 provisional p.A685T 0.001 172 0% 214 44.4% 52 46.1% benign(0.001) tolerated(0.09) neutral(0.296) NULL GRM6 2916 genome.wustl.edu 37 5 178419019 178419019 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_000843.3 -1 reviewed p.F190L 1.000 32 0% 145 31% 0 - probably_damaging(0.973) deleterious(0) deleterious(0.859) HMMPfam_ANF_receptor,superfamily_SSF53822 MDGA1 266727 genome.wustl.edu 37 6 37611598 37611598 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 ENST00000418178 -1 known p.T151M 0.034 65 0% 168 36.9% 1 100% - - - HMMPfam_MAM,HMMSmart_SM00137 HEATR2 54919 genome.wustl.edu 37 7 819722 819722 + Missense_Mutation SNP A A G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_017802.3 +1 validated p.Y791C 0.996 176 0% 373 14.2% 42 16.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_ARM repeat COG5 10466 genome.wustl.edu 37 7 106938787 106938787 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_006348.3 -1 validated p.S402 0.998 56 0% 133 12% 8 50% - - - NULL MDFIC 29969 genome.wustl.edu 37 7 114655780 114655780 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 ENST00000393486 +1 known p.E178K 1.000 454 0% 383 16.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TRBV6-5 28602 genome.wustl.edu 37 7 142180685 142180685 + Silent SNP T T A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 ENST00000390368 -1 known p.P58 0.002 710 0% 658 21% 0 - - - - HMMPfam_V-set,superfamily_SSF48726 DUSP4 1846 genome.wustl.edu 37 8 29194924 29194924 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001394.5 -1 reviewed p.A268 0.065 9 0.000 19 0.526 6 33.3% - - - HMMPfam_DSPc,HMMSmart_SM00404,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II CSMD3 114788 genome.wustl.edu 37 8 113650978 113650978 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_198123.1 -1 validated p.R1158H 1.000 87 0% 159 35.2% 0 - probably_damaging(0.977) tolerated(0.13) deleterious(0.671) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain COL15A1 1306 genome.wustl.edu 37 9 101832109 101832109 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001855.3 +1 reviewed p.A1370T 0.890 132 0% 160 40% 4 0% possibly_damaging(0.74) - - HMMPfam_Endostatin,superfamily_C-type_lectin_fold DBH 1621 genome.wustl.edu 37 9 136522345 136522345 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_000787.3 +1 reviewed p.R572 0.994 47 0% 176 45.5% 0 - - - - NULL ST8SIA6 338596 genome.wustl.edu 37 10 17369044 17369044 + Missense_Mutation SNP T T C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001004470.1 -1 validated p.T202A 0.983 221 0% 403 27% 0 - benign(0) tolerated(0.86) neutral(0.001) HMMPfam_Glyco_transf_29 ANKRD30A 91074 genome.wustl.edu 37 10 37431000 37431000 + Missense_Mutation SNP C C G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_052997.2 +1 validated p.P336R 0.406 53 0% 341 28.2% 0 - possibly_damaging(0.942) tolerated(0.11) deleterious(0.659) NULL PTEN 5728 genome.wustl.edu 37 10 89720875 89720875 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 ENST00000371953 +1 known p.K342N 1.000 54 0% 123 87.8% 189 98.9% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 SLIT1 6585 genome.wustl.edu 37 10 98819267 98819267 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_003061.2 -1 validated p.I345 0.941 46 0% 263 24% 1 0% - - - HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like SEC31B 25956 genome.wustl.edu 37 10 102269201 102269201 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_015490.3 -1 reviewed p.G91S 1.000 37 0% 154 24.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40 repeat-like SEC23IP 11196 genome.wustl.edu 37 10 121662334 121662334 + Silent SNP G G C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 ENST00000442952 +1 known p.G6R 0.000 111 0% 263 12.5% 11 9% - - - NULL MUC2 4583 genome.wustl.edu 37 11 1103861 1103861 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_002457.2 +1 reviewed p.T2716 0.009 7 0.000 101 0.455 0 - - - - HMMSmart_SM00041,HMMPfam_Cys_knot HBE1 3046 genome.wustl.edu 37 11 5290828 5290828 + Silent SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_005330.3 -1 reviewed p.G57 0.293 271 0% 187 38.5% 0 - - - - HMMPfam_Globin,superfamily_Globin-like SMPD1 6609 genome.wustl.edu 37 11 6411936 6411941 + In_Frame_Del DEL GCTGGC GCTGGC - rs71796847 TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 GCTGGC GCTGGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_000543.3 +1 reviewed p.AL40in_frame_del 0.001:0.021:0.346:0.520:0.511:0.351 - - - - - - - - - NULL NAV2 89797 genome.wustl.edu 37 11 20070621 20070621 + Missense_Mutation SNP C C A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_182964.5 +1 validated p.S1417Y 1.000 151 0% 122 37.7% 26 53.8% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL TNKS1BP1 85456 genome.wustl.edu 37 11 57087854 57087854 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_033396.2 -1 validated p.R143W 0.980 29 0% 147 34.7% 30 36.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SNX32 254122 genome.wustl.edu 37 11 65618530 65618530 + Missense_Mutation SNP T T C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_152760.2 +1 validated p.V203A 1.000 78 1.3% 143 43.4% 0 - possibly_damaging(0.858) tolerated(0.2) neutral(0.380) HMMPfam_Vps5 PVRL1 5818 genome.wustl.edu 37 11 119548393 119548393 + Missense_Mutation SNP T T C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_002855.4 -1 reviewed p.N202S 0.999 315 0% 392 32.7% 20 35% probably_damaging(0.972) tolerated(0.41) neutral(0.429) HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin CHD4 1108 genome.wustl.edu 37 12 6701583 6701583 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001273.2 -1 reviewed p.R975H 1.000 190 0% 212 55.2% 58 62% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SNF2_N PRPF40B 25766 genome.wustl.edu 37 12 50028379 50028379 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001031698.1 +1 provisional p.R310H 1.000 45 0% 188 29.8% 13 23% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain GDF11 10220 genome.wustl.edu 37 12 56142370 56142370 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_005811.3 +1 reviewed p.T149M 1.000 24 0% 95 41.1% 23 26% possibly_damaging(0.722) deleterious(0.01) deleterious(0.667) NULL DGKA 1606 genome.wustl.edu 37 12 56334709 56334709 + Missense_Mutation SNP A A G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001345.4 +1 reviewed p.K349R 0.278 140 0% 529 31% 12 33.3% benign(0.01) tolerated(0.47) neutral(0.011) NULL NAV3 89795 genome.wustl.edu 37 12 78513395 78513395 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_014903.4 +1 validated p.R1140H 1.000 125 0% 272 24.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL UHRF1BP1L 23074 genome.wustl.edu 37 12 100431416 100431416 + Nonstop_Mutation SNP A A T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_015054.1 -1 validated p.*1465K 0.077 156 0% 248 26.2% 15 40% - - - NULL MAPKAPK5 8550 genome.wustl.edu 37 12 112308118 112308118 + Missense_Mutation SNP A A G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_139078.1 +1 reviewed p.H146R 1.000 266 0% 506 23.5% 16 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase GCN1L1 10985 genome.wustl.edu 37 12 120580478 120580478 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_006836.1 -1 validated p.G1888R 1.000 22 0% 134 17.9% 31 32.2% probably_damaging(0.994) deleterious(0) deleterious(0.897) superfamily_ARM repeat GJA3 2700 genome.wustl.edu 37 13 20716981 20716981 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_021954.3 -1 reviewed p.Y149 0.992 14 0% 68 50% 0 - - - - NULL FGF9 2254 genome.wustl.edu 37 13 22275357 22275357 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_002010.2 +1 reviewed p.R137I 1.000 64 0% 173 47.4% 32 62.5% benign(0.34) tolerated(0.08) neutral(0.407) HMMPfam_FGF,HMMSmart_SM00442,PatternScan_HBGF_FGF,superfamily_Cytokine GPR12 2835 genome.wustl.edu 37 13 27333910 27333910 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_005288.3 -1 validated p.A19T 0.964 12 0% 98 48% 0 - benign(0.006) deleterious(0) neutral(0.445) superfamily_Family A G protein-coupled receptor-like ATP7B 540 genome.wustl.edu 37 13 52515284 52515284 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_000053.2 -1 reviewed p.S1163 0.000 151 0% 371 40.7% 5 40% - - - HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M PCDH17 27253 genome.wustl.edu 37 13 58299142 58299142 + Missense_Mutation SNP C C G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001040429.2 +1 reviewed p.A1065G 0.989 64 0% 79 39.2% 1 0% possibly_damaging(0.915) deleterious(0) deleterious(0.811) NULL LOC643677 643677 genome.wustl.edu 37 13 103382323 103382323 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 XM_002344085.1 -1 model p.K6756 0.003 291 0% 109 33% 0 - - - - NULL ARID4A 5926 genome.wustl.edu 37 14 58813832 58813832 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_002892.3 +1 reviewed p.R390K 1.000 29 0% 158 35.4% 0 - benign(0.271) tolerated(0.96) neutral(0.029) HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like TSHR 7253 genome.wustl.edu 37 14 81609929 81609929 + Silent SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_000369.2 +1 reviewed p.V509 1.000 1763 0% 1177 39.9% 0 - - - - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like EML1 2009 genome.wustl.edu 37 14 100405617 100405617 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001008707.1 +1 reviewed p.D778N 1.000 74 0% 300 40% 9 22.2% probably_damaging(0.968) deleterious(0.04) deleterious(0.759) superfamily_WD40_like EXOC3L4 91828 genome.wustl.edu 37 14 103570704 103570704 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001077594.1 +1 validated p.P421L 0.064 7 0.000 29 0.310 0 - possibly_damaging(0.736) tolerated(0.06) deleterious(0.592) HMMPfam_Sec6 UBE3A 7337 genome.wustl.edu 37 15 25616198 25616198 + Frame_Shift_Del DEL C C - novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_000462.2 -1 reviewed p.V378fs 1.000 - - - - - - - - - NULL C15orf52 388115 genome.wustl.edu 37 15 40627575 40627575 + Nonsense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_207380.2 -1 validated p.W463* 0.000 4 0.000 38 0.316 0 - - - - NULL NUSAP1 51203 genome.wustl.edu 37 15 41625167 41625167 + Silent SNP C C G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_016359.3 +1 validated p.P4 0.962 36 0% 124 50.8% 24 37.5% - - - NULL NARG2 79664 genome.wustl.edu 37 15 60760318 60760319 + Frame_Shift_Del DEL TT TT - novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 TT TT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_024611.4 -1 validated p.K117fs 0.970:1.000 - - - - - - - - - NULL TNRC6A 27327 genome.wustl.edu 37 16 24802677 24802677 + Missense_Mutation SNP A A G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_014494.2 +1 reviewed p.N905S 1.000 70 0% 122 41.8% 2 50% benign(0.001) tolerated(0.34) neutral(0.023) NULL PAPD5 64282 genome.wustl.edu 37 16 50250035 50250035 + Missense_Mutation SNP A A G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001040284.2 +1 validated p.T63A 1.000 293 0% 349 47.3% 2 100% benign(0.378) tolerated(0.41) neutral(0.136) HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase CDH8 1006 genome.wustl.edu 37 16 61823296 61823296 + Silent SNP T T C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001796.2 -1 reviewed p.R456 1.000 637 0% 275 35.3% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CLEC18C 283971 genome.wustl.edu 37 16 70211208 70211208 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_173619.2 +1 validated p.P94L 0.320 113 0% 310 10.3% 0 - possibly_damaging(0.527) tolerated(0.08) deleterious(0.478) HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like DNAH2 146754 genome.wustl.edu 37 17 7667543 7667543 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_020877.2 +1 validated p.H1096 0.882 731 0% 531 40.9% 0 - - - - superfamily_Spectrin repeat MYH1 4619 genome.wustl.edu 37 17 10395851 10395851 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_005963.3 -1 reviewed p.R1901H 1.000 607 0% 398 33.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_tail_1 TBC1D26 353149 genome.wustl.edu 37 17 15644512 15644512 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_178571.4 +1 validated p.W208L 0.987 101 0% 274 36.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p ULK2 9706 genome.wustl.edu 37 17 19689396 19689396 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001142610.1 -1 reviewed p.P702L 1.000 36 0% 110 43.6% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LIG3 3980 genome.wustl.edu 37 17 33325655 33325655 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_013975.2 +1 reviewed p.L674 1.000 69 0% 129 25.6% 15 40% - - - HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A2,superfamily_DNA ligase/mRNA capping enzyme catalytic domain GRN 2896 genome.wustl.edu 37 17 42428764 42428764 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_002087.2 +1 reviewed p.C290F 1.000 25 0% 201 32.3% 337 39.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00277,superfamily_Granulin repeat CD300A 11314 genome.wustl.edu 37 17 72470713 72470713 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_007261.2 +1 validated p.T141I 0.002 239 0% 156 38.5% 15 0% benign(0) tolerated(0.06) neutral(0.323) NULL TRIM47 91107 genome.wustl.edu 37 17 73871014 73871014 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_033452.2 -1 validated p.I489 0.970 32 0% 151 46.4% 57 35% - - - NULL TRIM65 201292 genome.wustl.edu 37 17 73887188 73887188 + Missense_Mutation SNP A A G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_173547.2 -1 validated p.L409P 0.000 7 0.000 53 0.453 6 50% possibly_damaging(0.46) tolerated(0.19) neutral(0.201) HMMPfam_SPRY,HMMSmart_SM00449 C17orf101 79701 genome.wustl.edu 37 17 80350294 80350294 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_024648.2 -1 validated p.E314K 0.064 49 0% 181 43.1% 60 51.6% benign(0.002) tolerated(0.72) neutral(0.002) NULL ELAVL1 1994 genome.wustl.edu 37 19 8032492 8032492 + Nonsense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001419.2 -1 reviewed p.R205* 0.551 55 0% 376 36.4% 98 21.4% - - - NULL SMARCA4 6597 genome.wustl.edu 37 19 11132497 11132497 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001128849.1 +1 reviewed p.R905C 0.989 27 0% 113 44.2% 125 48.8% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540 CPAMD8 27151 genome.wustl.edu 37 19 17091453 17091453 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_015692.2 -1 validated p.C527Y 1.000 57 0% 250 37.6% 9 33.3% probably_damaging(1) tolerated(0.17) deleterious(0.559) HMMPfam_A2M_N_2 TSHZ3 57616 genome.wustl.edu 37 19 31768806 31768806 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_020856.2 -1 validated p.P631 0.000 27 0% 80 41.2% 2 0% - - - NULL TPRX1 284355 genome.wustl.edu 37 19 48305638 48305638 + Silent SNP T T C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_198479.2 -1 validated p.P210 0.003 68 1.5% 550 14.9% 0 - - - - NULL RASIP1 54922 genome.wustl.edu 37 19 49238533 49238533 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_017805.2 -1 validated p.D367N 1.000 16 0% 127 40.9% 5 60% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL IZUMO1 284359 genome.wustl.edu 37 19 49245131 49245131 + Silent SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_182575.2 -1 validated p.V223 0.006 24 0% 119 43.7% 0 - - - - superfamily_Immunoglobulin ZNF606 80095 genome.wustl.edu 37 19 58490334 58490334 + Missense_Mutation SNP C C G novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_025027.3 -1 validated p.E572Q 0.325 90 0% 193 18.1% 2 50% benign(0.112) tolerated(0.05) neutral(0.354) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers JPH2 57158 genome.wustl.edu 37 20 42744486 42744486 + Missense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_020433.4 -1 reviewed p.R610Q 0.000 6 0.000 55 0.218 0 - benign(0.089) tolerated(0.4) neutral(0.022) NULL HSPA13 6782 genome.wustl.edu 37 21 15746370 15746370 + Silent SNP C C A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_006948.4 -1 reviewed p.L328 0.012 125 0% 219 39.3% 7 42.8% - - - superfamily_Actin-like ATPase domain CCT8L2 150160 genome.wustl.edu 37 22 17072856 17072856 + Silent SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_014406.4 -1 validated p.D195 0.779 34 0% 160 35.6% 0 - - - - HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like RAB36 9609 genome.wustl.edu 37 22 23487629 23487629 + Missense_Mutation SNP C C A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_004914.2 +1 validated p.T26K 0.000 11 0% 23 65.2% 0 - unknown(0) - - NULL BAIAP2L2 80115 genome.wustl.edu 37 22 38483155 38483156 + In_Frame_Ins INS - - TCATGGGTG novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_025045.4 -1 validated p.412in_frame_insTPM 0.001:0.006 - - - - - - - - - superfamily_SH3-domain EP300 2033 genome.wustl.edu 37 22 41572485 41572485 + Nonsense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001429.3 +1 reviewed p.E1672* 1.000 159 0% 105 40% 24 58.3% - - - HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1 ENSG00000210082 0 genome.wustl.edu 37 MT 2957 2957 + RNA SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 ENST00000387347 +1 known NULL NULL 3 0.000 41 0.732 6976 71.4% - - - - VCX3A 51481 genome.wustl.edu 37 X 6451929 6451929 + Missense_Mutation SNP C C T rs72609545 TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_016379.3 -1 reviewed p.V140M 0.197 53 0% 1082 7.4% 0 - unknown(0) tolerated(0.07) - NULL DMD 1756 genome.wustl.edu 37 X 32663252 32663252 + Silent SNP T T C novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_004006.2 -1 reviewed p.E326 0.994 226 0% 366 36.9% 0 - - - - NULL RBM10 8241 genome.wustl.edu 37 X 47034471 47034471 + Nonsense_Mutation SNP C C T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_005676.3 +1 reviewed p.R186* 1.000 90 0% 199 41.2% 24 0% - - - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD IL2RG 3561 genome.wustl.edu 37 X 70328194 70328194 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_000206.2 -1 reviewed p.T286K 0.015 491 0.2% 397 42.1% 11 36.3% benign(0.071) tolerated(0.22) neutral(0.047) NULL CXorf26 51260 genome.wustl.edu 37 X 75393431 75393431 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_016500.3 +1 predicted p.E14D 0.763 149 0% 599 13% 27 0% probably_damaging(0.98) deleterious(0.01) deleterious(0.830) NULL GPRASP1 9737 genome.wustl.edu 37 X 101912776 101912776 + Missense_Mutation SNP A A T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_001099410.1 +1 reviewed p.E1312V 0.043 91 0% 176 46% 0 - benign(0.01) deleterious(0.03) neutral(0.365) HMMPfam_DUF634,superfamily_ARM-type_fold NRK 203447 genome.wustl.edu 37 X 105168724 105168724 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_198465.2 +1 validated p.G1005S 0.001 501 0.2% 134 27.6% 0 - benign(0.025) tolerated(0.24) neutral(0.038) NULL MIR220A 407005 genome.wustl.edu 37 X 122696027 122696027 + RNA SNP G G A rs182728148 by1000genomes TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 ENST00000384922 -1 known NULL 0.999 455 0% 324 17.9% 0 - - - - - SMARCA1 6594 genome.wustl.edu 37 X 128631826 128631829 + Frame_Shift_Del DEL TTCT TTCT - novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 TTCT TTCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_003069.3 -1 reviewed p.K499fs 0.999:1.000:1.000:1.000 - - - - - - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases GPC3 2719 genome.wustl.edu 37 X 133119401 133119401 + Missense_Mutation SNP G G T novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_004484.3 -1 reviewed p.P26T 1.000 8 0.000 35 0.314 0 - possibly_damaging(0.795) deleterious(0) deleterious(0.743) HMMPfam_Glypican MAGEC3 139081 genome.wustl.edu 37 X 140983339 140983339 + Missense_Mutation SNP G G A novel TCGA-BG-A0MG-01A-21D-A10B-09 TCGA-BG-A0MG-10A-01W-A10C-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 822ff861-669f-430c-b1f0-dcd75a5141d2 c4e151ae-19e6-4bac-991d-cb9534d80536 NM_138702.1 +1 reviewed p.G373R 0.000 57 0% 138 21.7% 0 - unknown(0) deleterious(0) - NULL