Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain MIB2 142678 genome.wustl.edu 37 1 1559166 1559166 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_080875.2 +1 validated p.P145L 1.000 4 0.000 8 1.000 7 100% probably_damaging(0.978) deleterious(0.01) deleterious(0.826) HMMPfam_ZZ,HMMSmart_SM00291 CAMTA1 23261 genome.wustl.edu 37 1 7797624 7797624 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015215.1 +1 validated p.N1218D 1.000 24 0% 35 74.3% 1 100% probably_damaging(0.976) tolerated(0.25) neutral(0.455) superfamily_Ankyrin repeat MST1P9 11223 genome.wustl.edu 37 1 17086085 17086086 + RNA INS - - C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NR_002729.2 -1 validated NULL 0.998:0.997 - - - - - - - - - - TAS1R2 80834 genome.wustl.edu 37 1 19166892 19166892 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_152232.2 -1 validated p.A574D 0.005 12 0% 30 33.3% 0 - benign(0.208) deleterious(0) neutral(0.465) HMMPfam_7tm_3 AHDC1 27245 genome.wustl.edu 37 1 27877168 27877168 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001029882.2 -1 validated p.R487W 0.923 4 0.000 26 0.385 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL NFYC 4802 genome.wustl.edu 37 1 41218846 41218846 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000440226 +1 known p.Y8H 0.999 186 0% 338 34% 22 36.3% - - - NULL CYP4B1 1580 genome.wustl.edu 37 1 47264759 47264759 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001099772.1 +1 reviewed p.V2 0.000 46 0% 229 63.3% 0 - - - - NULL STIL 6491 genome.wustl.edu 37 1 47725965 47725965 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001048166.1 -1 reviewed p.A1026T 1.000 344 0.3% 223 63.2% 5 80% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DOCK7 85440 genome.wustl.edu 37 1 63100574 63100574 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_033407.2 -1 validated p.F302S 1.000 88 0% 130 17.7% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL LEPR 3953 genome.wustl.edu 37 1 66070765 66070765 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002303.4 +1 reviewed p.S483Y 0.048 267 0% 477 27% 1 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_Fibronectin type III PKN2 5586 genome.wustl.edu 37 1 89236088 89236088 + Silent SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006256.2 +1 validated p.K186 1.000 66 0% 236 64.4% 0 - - - - HMMPfam_HR1,HMMSmart_Hr1,superfamily_PKN_effector COL11A1 1301 genome.wustl.edu 37 1 103540202 103540202 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_080629.2 -1 reviewed p.T208K 1.000 368 0.5% 453 57.8% 0 - unknown(0) deleterious(0.03) - HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 NTNG1 22854 genome.wustl.edu 37 1 108023295 108023295 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001113226.1 +1 validated p.R485C 1.000 7 0.000 15 0.467 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin FAM46C 54855 genome.wustl.edu 37 1 118165695 118165695 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_017709.3 +1 validated p.V69I 1.000 24 0% 98 18.4% 0 - benign(0) tolerated(0.49) neutral(0.011) HMMPfam_DUF1693 CTSK 1513 genome.wustl.edu 37 1 150772178 150772179 + Frame_Shift_Del DEL CT CT - novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000396.2 -1 reviewed p.S209fs 0.005:0.440 - - - - - - - - - HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases OR10K1 391109 genome.wustl.edu 37 1 158436062 158436062 + Silent SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001004473.1 +1 provisional p.T237 0.997 77 0% 246 26% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 MNDA 4332 genome.wustl.edu 37 1 158815582 158815582 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002432.1 +1 reviewed p.K259R 0.000 130 0% 224 67.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_HIN LY9 4063 genome.wustl.edu 37 1 160784477 160784477 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002348.2 +1 validated p.G333D 0.137 10 0% 59 27.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00409,superfamily_Immunoglobulin CD247 919 genome.wustl.edu 37 1 167408593 167408593 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_198053.2 -1 reviewed p.N69K 0.385 19 0% 62 64.5% 2 0% benign(0.086) tolerated(0.07) neutral(0.326) HMMPfam_ITAM,HMMSmart_SM00077 SELP 6403 genome.wustl.edu 37 1 169560664 169560664 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003005.3 -1 reviewed p.S813I 1.000 146 0% 165 30.3% 1 0% possibly_damaging(0.855) deleterious(0) deleterious(0.774) NULL SCYL3 57147 genome.wustl.edu 37 1 169823890 169823890 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_181093.2 -1 validated p.D564Y 0.000 117 0% 89 69.7% 1 100% possibly_damaging(0.502) deleterious(0.01) deleterious(0.573) NULL CEP350 9857 genome.wustl.edu 37 1 179989165 179989165 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014810.4 +1 reviewed p.A752 0.180 107 0% 260 70.4% 0 - - - - NULL HMCN1 83872 genome.wustl.edu 37 1 185992256 185992256 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_031935.2 +1 reviewed p.T1907R 0.942 55 0% 150 32% 0 - benign(0.335) tolerated(0.47) neutral(0.116) HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 186121942 186121942 + Missense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_031935.2 +1 reviewed p.L4986Q 0.998 153 0% 599 62.4% 0 - possibly_damaging(0.8) deleterious(0.02) deleterious(0.684) HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like ASPM 259266 genome.wustl.edu 37 1 197071035 197071035 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018136.4 -1 reviewed p.H2449R 0.000 91 0% 173 27.2% 3 33.3% benign(0) tolerated(0.24) neutral(0.037) superfamily_P-loop containing nucleoside triphosphate hydrolases PCNXL2 80003 genome.wustl.edu 37 1 233395007 233395007 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014801.3 -1 provisional p.Q201K 0.005 77 0% 313 26.8% 0 - benign(0) tolerated(1) - NULL RYR2 6262 genome.wustl.edu 37 1 237608716 237608716 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001035.2 +1 reviewed p.E396K 1.000 273 0% 344 31.1% 0 - benign(0.15) - - HMMPfam_MIR,superfamily_MIR domain (Pfam 02815) RYR2 6262 genome.wustl.edu 37 1 237993921 237993921 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001035.2 +1 reviewed p.A4916D 1.000 142 0% 301 30.9% 0 - probably_damaging(1) - - NULL GREM2 64388 genome.wustl.edu 37 1 240656392 240656392 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_022469.3 -1 reviewed p.V128 1.000 11 0% 42 16.7% 0 - - - - HMMPfam_DAN,HMMSmart_CT OR2G3 81469 genome.wustl.edu 37 1 247769111 247769111 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001001914.1 +1 provisional p.T75I 0.007 251 0% 623 31.1% 0 - probably_damaging(0.957) deleterious(0) deleterious(0.845) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR2M4 26245 genome.wustl.edu 37 1 248402864 248402864 + Missense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_017504.1 +1 provisional p.S212T 0.000 145 0% 206 24.3% 0 - benign(0.103) tolerated(0.37) neutral(0.027) HMMPfam_7tm_1,superfamily_SSF81321 SNTG2 54221 genome.wustl.edu 37 2 1271240 1271240 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018968.3 +1 reviewed p.G394D 0.994 40 0% 157 24.2% 0 - benign(0.012) tolerated(0.61) neutral(0.005) NULL SOX11 6664 genome.wustl.edu 37 2 5833011 5833011 + Missense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003108.3 +1 reviewed p.M53K 1.000 10 0% 56 17.9% 0 - possibly_damaging(0.943) deleterious(0) deleterious(0.832) HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box TRIB2 28951 genome.wustl.edu 37 2 12880966 12880966 + RNA SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NR_027303.1 +1 reviewed NULL 1.000 38 0% 123 21.1% 1 0% - - - - MATN3 4148 genome.wustl.edu 37 2 20200238 20200238 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002381.4 -1 reviewed p.G378S 1.000 69 0% 227 44.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin KLHL29 114818 genome.wustl.edu 37 2 23916358 23916358 + Missense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000486442 +1 known p.V501D 1.000 5 0.000 21 0.286 0 - probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_BACK C2orf44 80304 genome.wustl.edu 37 2 24261057 24261059 + In_Frame_Del DEL TTC TTC - novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 TTC TTC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_025203.2 -1 validated p.E436in_frame_del 0.000:0.375:0.820 - - - - - - - - - NULL EFR3B 22979 genome.wustl.edu 37 2 25355863 25355863 + Silent SNP G G A rs137872758 by1000genomes TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000264719 +1 known p.G293S 0.028 10 0% 29 44.8% 0 - - - - NULL KIF3C 3797 genome.wustl.edu 37 2 26204163 26204163 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002254.6 -1 validated p.H208 1.000 15 0% 106 22.6% 2 0% - - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KCNK3 3777 genome.wustl.edu 37 2 26950677 26950677 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002246.2 +1 reviewed p.R142 0.718 11 0% 49 32.7% 1 100% - - - superfamily_Voltage-gated potassium channels ATL2 64225 genome.wustl.edu 37 2 38570447 38570447 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001135673.1 -1 validated p.F109S 1.000 80 0% 117 26.5% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases LOC728819 728819 genome.wustl.edu 37 2 43902644 43902644 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001101330.1 -1 provisional p.I273T 0.921 174 0% 267 12.4% 0 - - - - NULL SIX2 10736 genome.wustl.edu 37 2 45233417 45233417 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_016932.4 -1 reviewed p.P256 0.004 24 0% 173 26.6% 1 100% - - - NULL VRK2 7444 genome.wustl.edu 37 2 58386545 58386545 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001130480.1 +1 reviewed p.S415N 0.000 195 0% 208 16.8% 17 41.1% possibly_damaging(0.49) deleterious(0.01) deleterious(0.569) NULL EHBP1 23301 genome.wustl.edu 37 2 63092038 63092038 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015252.3 +1 reviewed p.I345M 0.979 84 0% 77 44.2% 2 50% benign(0.012) deleterious(0.01) neutral(0.406) NULL CEP68 23177 genome.wustl.edu 37 2 65299326 65299326 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015147.2 +1 validated p.P366S 0.000 18 0% 118 22% 0 - benign(0.024) tolerated(0.22) neutral(0.043) NULL DUSP11 8446 genome.wustl.edu 37 2 74002108 74002108 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003584.2 -1 reviewed p.R128* 0.031 350 0% 462 18.6% 7 0% - - - HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II LRRTM1 347730 genome.wustl.edu 37 2 80530670 80530670 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_178839.4 -1 validated p.T92M 1.000 20 0% 163 20.2% 0 - probably_damaging(0.997) tolerated(0.09) deleterious(0.762) HMMPfam_LRR_1,superfamily_SSF52058 POU3F3 5455 genome.wustl.edu 37 2 105473061 105473061 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006236.1 +1 provisional p.A365T 1.000 16 0% 59 27.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_2,superfamily_Lambda_like_DNA STEAP3 55240 genome.wustl.edu 37 2 120020909 120020909 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_182915.2 +1 validated p.V498I 1.000 12 0% 54 33.3% 11 90.9% possibly_damaging(0.942) deleterious(0) deleterious(0.832) NULL MYO7B 4648 genome.wustl.edu 37 2 128387255 128387255 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080527.1 +1 provisional p.L1528 0.970 16 0% 55 36.4% 1 100% - - - HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2 RAB3GAP1 22930 genome.wustl.edu 37 2 135891570 135891570 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_012233.2 +1 reviewed p.R489H 1.000 169 0% 297 52.2% 8 50% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL THSD7B 80731 genome.wustl.edu 37 2 138413145 138413145 + Silent SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080427.1 +1 provisional p.A1311 0.000 48 0% 273 44.3% 0 - - - - HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat NEB 4703 genome.wustl.edu 37 2 152352790 152352790 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000397337 -1 known p.R296Q 1.000 477 0% 594 45.1% 0 - - - - HMMPfam_Nebulin,HMMSmart_SM00227 BAZ2B 29994 genome.wustl.edu 37 2 160303448 160303448 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_013450.2 -1 validated p.V181L 1.000 282 0% 436 46.3% 0 - benign(0.428) deleterious(0.04) deleterious(0.488) NULL SLC38A11 151258 genome.wustl.edu 37 2 165795975 165795975 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173512.1 -1 provisional p.I96M 1.000 223 0% 465 23.4% 0 - benign(0.006) tolerated(0.09) neutral(0.296) HMMPfam_Aa_trans MYO3B 140469 genome.wustl.edu 37 2 171355137 171355137 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_138995.3 +1 validated p.P1017H 1.000 153 0% 359 20.3% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases DLX1 1745 genome.wustl.edu 37 2 172952984 172952984 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_178120.4 +1 reviewed p.*256 1.000 7 0.000 59 0.542 0 - - - - NULL GPR155 151556 genome.wustl.edu 37 2 175337925 175337925 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001033045.2 -1 validated p.G210R 1.000 147 0% 156 25.6% 0 - possibly_damaging(0.749) tolerated(0.68) neutral(0.277) HMMPfam_Mem_trans TTN 7273 genome.wustl.edu 37 2 179431927 179431927 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000356127 -1 known p.P23741L 1.000 74 0% 130 25.4% 0 - probably_damaging(0.99) - - HMMPfam_fn3,HMMSmart_SM00060 NCKAP1 10787 genome.wustl.edu 37 2 183829471 183829471 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_205842.1 -1 validated p.Y571C 1.000 157 0% 356 18% 19 21% probably_damaging(0.978) deleterious(0) deleterious(0.865) HMMPfam_Nckap1 PLCL1 5334 genome.wustl.edu 37 2 198950518 198950518 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006226.3 +1 validated p.A661 0.428 83 0% 202 23.3% 1 0% - - - HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB KCTD18 130535 genome.wustl.edu 37 2 201371659 201371659 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_152387.2 -1 validated p.R27 0.336 73 0% 180 25.6% 3 66.6% - - - HMMPfam_K_tetra,superfamily_POZ domain FAM126B 285172 genome.wustl.edu 37 2 201846569 201846569 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173822.3 -1 validated p.E339 1.000 71 0% 283 20.5% 0 - - - - NULL ABCA12 26154 genome.wustl.edu 37 2 215880329 215880329 + Missense_Mutation SNP A A C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173076.2 -1 reviewed p.L614R 0.727 132 0% 295 47.5% 0 - possibly_damaging(0.8) tolerated(0.1) deleterious(0.587) NULL SLC19A3 80704 genome.wustl.edu 37 2 228560726 228560726 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_025243.3 -1 reviewed p.V351I 0.000 40 0% 133 21.1% 0 - benign(0.001) tolerated(0.95) - HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter SPHKAP 80309 genome.wustl.edu 37 2 228883643 228883643 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001142644.1 -1 validated p.M643V 0.022 114 0% 317 39.4% 0 - benign(0) tolerated(1) - NULL SPATA3 130560 genome.wustl.edu 37 2 231861184 231861184 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_139073.3 +1 validated p.R79L 0.000 83 0% 534 49.1% 0 - possibly_damaging(0.626) tolerated(0.42) neutral(0.232) NULL AGAP1 116987 genome.wustl.edu 37 2 237028991 237028991 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001037131.1 +1 validated p.R757Q 1.000 4 0.000 23 0.522 2 50% benign(0.359) tolerated(0.43) neutral(0.128) superfamily_Ankyrin repeat TRAF3IP1 26146 genome.wustl.edu 37 2 239237890 239237890 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015650.3 +1 validated p.G274 0.002 95 0% 618 22% 4 25% - - - HMMPfam_MIP-T3 ANKMY1 51281 genome.wustl.edu 37 2 241465653 241465653 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_016552.2 -1 validated p.A299V 0.006 45 0% 122 23.8% 1 100% probably_damaging(0.995) tolerated(0.3) deleterious(0.486) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat SETD5 55209 genome.wustl.edu 37 3 9486932 9486932 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080517.1 +1 provisional p.D463G 0.569 109 0% 282 31.2% 2 100% benign(0.005) tolerated(0.27) neutral(0.034) NULL SCN5A 6331 genome.wustl.edu 37 3 38601789 38601789 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001099404.1 -1 reviewed p.N1365S 1.000 89 0% 343 66.2% 2 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SCN10A 6336 genome.wustl.edu 37 3 38798615 38798615 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006514.2 -1 validated p.S329Y 0.017 137 0% 251 61.4% 0 - benign(0.026) deleterious(0) neutral(0.446) HMMPfam_Ion_trans,superfamily_SSF81324 XIRP1 165904 genome.wustl.edu 37 3 39227360 39227360 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_194293.2 -1 provisional p.R1193W 0.000 8 0.000 32 0.312 0 - benign(0) tolerated(0.2) neutral(0.049) NULL PTH1R 5745 genome.wustl.edu 37 3 46940035 46940035 + Silent SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000313063 +1 known p.P372 0.000 7 0.000 19 0.632 0 - - - - HMMPfam_7tm_2 DNAH1 25981 genome.wustl.edu 37 3 52400524 52400524 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015512.4 +1 validated p.G1857D 1.000 12 0% 44 61.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases ARHGEF3 50650 genome.wustl.edu 37 3 56835811 56835811 + Nonsense_Mutation SNP A A T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000465659 -1 known p.L56* 1.000 15 0% 42 33.3% 0 - benign(0.312) tolerated(0.56) neutral(0.104) NULL FAM55C 91775 genome.wustl.edu 37 3 101540726 101540726 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001134456.1 +1 validated p.L536 0.993 19 0% 109 18.3% 4 50% - - - NULL CBLB 868 genome.wustl.edu 37 3 105400581 105400581 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_170662.3 -1 validated p.S761 1.000 194 0% 361 11.1% 5 40% - - - NULL BBX 56987 genome.wustl.edu 37 3 107463526 107463526 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001142568.1 +1 validated p.R240H 1.000 117 0% 346 39.3% 0 - benign(0.237) deleterious(0) neutral(0.468) HMMPfam_DUF2028 ARHGAP31 57514 genome.wustl.edu 37 3 119133188 119133188 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020754.2 +1 reviewed p.P804 0.001 15 0% 81 37% 0 - - - - NULL ILDR1 286676 genome.wustl.edu 37 3 121711998 121711998 + Missense_Mutation SNP G G C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_175924.2 -1 provisional p.S489W 1.000 39 0% 156 19.9% 4 25% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) NULL SLC41A3 54946 genome.wustl.edu 37 3 125786790 125786790 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001008485.1 -1 validated p.Q91H 0.999 4 0.000 42 0.286 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL H1FOO 132243 genome.wustl.edu 37 3 129268081 129268081 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_153833.1 +1 reviewed p.D206N 0.000 10 0% 62 51.6% 0 - benign(0.103) tolerated(0.43) neutral(0.021) NULL PIK3R4 30849 genome.wustl.edu 37 3 130463570 130463570 + Frame_Shift_Del DEL T T - novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014602.2 -1 validated p.T165fs 1.000 - - - - - - - - - HMMPfam_Pkinase_Tyr,superfamily_Kinase_like PLSCR2 57047 genome.wustl.edu 37 3 146171805 146171805 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020359.1 -1 provisional p.A156E 0.000 414 0% 538 24.7% 0 - benign(0.003) tolerated(0.51) neutral(0.009) HMMPfam_Scramblase ZIC4 84107 genome.wustl.edu 37 3 147108916 147108916 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000383075 -1 known p.R269Q 1.000 8 0.000 18 0.278 0 - benign(0.356) deleterious(0.04) neutral(0.462) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers RNF13 11342 genome.wustl.edu 37 3 149589884 149589884 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_007282.4 +1 reviewed p.N88 1.000 351 0% 417 32.6% 6 50% - - - HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain MED12L 116931 genome.wustl.edu 37 3 150908552 150908552 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_053002.4 +1 reviewed p.L601P 1.000 108 0% 405 24.2% 0 - probably_damaging(1) tolerated(0.05) deleterious(0.845) NULL GOLIM4 27333 genome.wustl.edu 37 3 167747023 167747023 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014498.3 -1 reviewed p.G501* 0.997 108 0% 495 17.4% 19 5.2% - - - NULL NAALADL2 254827 genome.wustl.edu 37 3 175293962 175293962 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_207015.2 +1 validated p.I596T 0.974 103 0% 273 15% 4 50% benign(0.002) tolerated(0.43) neutral(0.013) superfamily_Zn-dependent exopeptidases ZMAT3 64393 genome.wustl.edu 37 3 178785362 178785362 + Missense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_022470.3 -1 reviewed p.D60V 1.000 78 0% 513 12.1% 0 - possibly_damaging(0.898) deleterious(0) deleterious(0.799) NULL DVL3 1857 genome.wustl.edu 37 3 183884752 183884752 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_004423.3 +1 reviewed p.P396H 1.000 47 0% 315 45.7% 45 46.6% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL VPS8 23355 genome.wustl.edu 37 3 184637916 184637916 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001009921.2 +1 validated p.T795N 1.000 136 0% 138 33.3% 0 - probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL TP63 8626 genome.wustl.edu 37 3 189611996 189611996 + Missense_Mutation SNP A A T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003722.4 +1 reviewed p.D583V 1.000 36 0% 196 22.4% 2 0% benign(0.323) tolerated(0.25) neutral(0.138) HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2 ZNF518B 85460 genome.wustl.edu 37 4 10447039 10447039 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_053042.2 -1 validated p.L305P 0.000 189 0% 254 64.6% 1 100% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL GRXCR1 389207 genome.wustl.edu 37 4 42965026 42965026 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080476.1 +1 provisional p.V168I 0.996 149 0% 307 61.6% 0 - probably_damaging(0.995) tolerated(0.19) deleterious(0.507) HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd LPHN3 23284 genome.wustl.edu 37 4 62863946 62863946 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015236.4 +1 reviewed p.I1052V 1.000 364 0% 400 31.2% 1 100% benign(0.001) tolerated(0.79) neutral(0.001) HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like WDFY3 23001 genome.wustl.edu 37 4 85742581 85742581 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014991.4 -1 reviewed p.A416V 1.000 123 0% 206 28.6% 0 - possibly_damaging(0.936) tolerated(0.19) neutral(0.431) superfamily_ARM repeat H2AFZ 3015 genome.wustl.edu 37 4 100870076 100870076 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002106.3 -1 reviewed p.A73T 1.000 112 0% 166 28.3% 431 46.8% possibly_damaging(0.521) deleterious(0.04) deleterious(0.524) HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold ANK2 287 genome.wustl.edu 37 4 114260443 114260443 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000514960 +1 known p.*299R 1.000 131 0% 233 24.9% 0 - - - - NULL C4orf33 132321 genome.wustl.edu 37 4 130030679 130030679 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001099783.1 +1 validated p.G116C 1.000 120 0% 166 31.9% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TLL1 7092 genome.wustl.edu 37 4 166924636 166924636 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_012464.3 +1 reviewed p.L242F 1.000 145 0% 429 58.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) "HMMPfam_Astacin,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain" TERT 7015 genome.wustl.edu 37 5 1272327 1272327 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_198253.2 -1 reviewed p.P785 0.000 4 0.000 41 0.317 0 - - - - superfamily_DNA/RNA polymerases SRD5A1 6715 genome.wustl.edu 37 5 6656219 6656219 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000513117 +1 known p.D108N 0.984 304 0% 519 21.4% 4 50% unknown(0) - - NULL ADCY2 108 genome.wustl.edu 37 5 7690916 7690916 + Missense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020546.2 +1 reviewed p.F278Y 1.000 48 0% 216 22.7% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_CYCc,superfamily_A/G_cyclase CDH9 1007 genome.wustl.edu 37 5 26881509 26881509 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_016279.3 -1 reviewed p.R702S 1.000 222 0% 427 45.4% 0 - probably_damaging(0.962) tolerated(0.11) deleterious(0.677) HMMPfam_Cadherin_C CDH9 1007 genome.wustl.edu 37 5 26988271 26988271 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_016279.3 -1 reviewed p.W57L 1.000 204 0% 351 23.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Cadherin NIM1 167359 genome.wustl.edu 37 5 43277223 43277223 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_153361.2 +1 provisional p.S119 1.000 84 0% 326 21.5% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PLK2 10769 genome.wustl.edu 37 5 57752346 57752346 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006622.2 -1 validated p.Q409 1.000 239 0% 707 22.6% 2 0% - - - NULL EDIL3 10085 genome.wustl.edu 37 5 83680184 83680184 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005711.3 -1 reviewed p.R3 0.199 7 0.000 46 0.217 0 - - - - NULL NR2F1 7025 genome.wustl.edu 37 5 92929324 92929324 + Missense_Mutation SNP T T G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005654.4 +1 provisional p.C350G 1.000 17 0% 48 45.8% 26 84.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor MAN2A1 4124 genome.wustl.edu 37 5 109155529 109155529 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002372.2 +1 reviewed p.G757C 0.036 117 0% 168 19% 2 0% possibly_damaging(0.482) tolerated(0.13) neutral(0.412) superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C CHSY3 337876 genome.wustl.edu 37 5 129243924 129243926 + In_Frame_Del DEL AGA AGA - novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 AGA AGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_175856.4 +1 validated p.E320in_frame_del 0.824:1.000:1.000 - - - - - - - - - NULL TGFBI 7045 genome.wustl.edu 37 5 135382676 135382676 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000358.2 +1 reviewed p.N199S 0.246 19 0% 60 28.3% 15 0% benign(0) tolerated(0.46) neutral(0.012) HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain SLC35A4 113829 genome.wustl.edu 37 5 139947679 139947679 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_080670.2 +1 provisional p.A309T 1.000 17 0% 17 35.3% 52 23% benign(0.355) tolerated(0.05) neutral(0.458) HMMPfam_Nuc_sug_transp PCDHA9 9752 genome.wustl.edu 37 5 140230244 140230244 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_031857.1 +1 reviewed p.R722W 1.000 21 0% 95 20% 1 0% possibly_damaging(0.922) deleterious(0.01) deleterious(0.777) NULL PCDHA11 56138 genome.wustl.edu 37 5 140249893 140249893 + Missense_Mutation SNP A A T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018902.3 +1 reviewed p.N402I 0.752 35 0% 196 29.1% 6 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA12 56137 genome.wustl.edu 37 5 140255429 140255429 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018903.2 +1 reviewed p.K124N 0.002 81 0% 209 16.3% 0 - possibly_damaging(0.626) tolerated(0.43) neutral(0.232) HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like PCDHA12 56137 genome.wustl.edu 37 5 140256415 140256415 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018903.2 +1 reviewed p.P453H 1.000 23 0% 116 39.7% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like PCDHB3 56132 genome.wustl.edu 37 5 140482414 140482414 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018937.2 +1 reviewed p.V727 0.000 76 0% 132 14.4% 16 12.5% - - - NULL PCDHB16 57717 genome.wustl.edu 37 5 140563584 140563584 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020957.1 +1 reviewed p.A484T 1.000 17 0% 52 36.5% 3 33.3% possibly_damaging(0.936) deleterious(0) deleterious(0.826) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB11 56125 genome.wustl.edu 37 5 140580213 140580213 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018931.2 +1 reviewed p.R289H 0.000 164 0% 270 44.8% 1 100% benign(0.002) tolerated(0.32) neutral(0.024) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHGA11 56105 genome.wustl.edu 37 5 140802742 140802742 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018914.2 +1 reviewed p.H650D 1.000 15 0% 33 42.4% 1 0% possibly_damaging(0.815) deleterious(0.03) deleterious(0.672) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like JAKMIP2 9832 genome.wustl.edu 37 5 146997571 146997571 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014790.3 -1 provisional p.A750V 1.000 185 0% 724 25.8% 1 0% possibly_damaging(0.767) tolerated(0.14) deleterious(0.534) NULL SH3TC2 79628 genome.wustl.edu 37 5 148384442 148384442 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_024577.3 -1 reviewed p.Y1233* 1.000 13 0% 79 17.7% 0 - - - - NULL SLC36A1 206358 genome.wustl.edu 37 5 150859004 150859004 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_078483.2 +1 reviewed p.E371 0.000 59 0% 517 24.4% 1 100% - - - HMMPfam_Aa_trans ATP10B 23120 genome.wustl.edu 37 5 160042867 160042867 + Silent SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_025153.2 -1 validated p.L877 1.000 41 0% 137 51.8% 0 - - - - superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N GABRB2 2561 genome.wustl.edu 37 5 160753381 160753381 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_021911.2 -1 reviewed p.L395 0.993 213 0% 342 19.3% 0 - - - - HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM FAM153A 285596 genome.wustl.edu 37 5 175536156 175536156 + Missense_Mutation SNP T T G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000393522 +1 known p.I327S 0.004 224 0% 943 22% 0 - - - - NULL GMDS 2762 genome.wustl.edu 37 6 1726689 1726689 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001500.2 -1 validated p.H316 1.000 148 0% 354 26.3% 114 43.8% - - - superfamily_NAD(P)-bd HIST1H2AC 8334 genome.wustl.edu 37 6 26124837 26124837 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003512.3 +1 reviewed p.K126R 1.000 40 0% 129 31% 20 45% benign(0.125) deleterious(0) neutral(0.455) superfamily_Histone-fold TAF8 129685 genome.wustl.edu 37 6 42025135 42025135 + Missense_Mutation SNP A A T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_138572.2 +1 reviewed p.T125S 1.000 25 0% 219 15.5% 31 12.9% benign(0.116) tolerated(0.52) neutral(0.018) NULL LRRC73 221424 genome.wustl.edu 37 6 43475384 43475384 + Splice_Site SNP T T G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000468319 -1 known NULL 0.771 32 0% 370 13% 4 50% - - - - TCTE1 202500 genome.wustl.edu 37 6 44254263 44254263 + Missense_Mutation SNP G G C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_182539.3 -1 validated p.P95R 1.000 33 0% 245 13.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL MUT 4594 genome.wustl.edu 37 6 49425672 49425672 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000255.3 -1 reviewed p.V162A 1.000 107 0% 91 25.3% 3 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes BAG2 9532 genome.wustl.edu 37 6 57048630 57048630 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_004282.3 +1 reviewed p.T93I 1.000 95 0% 219 19.6% 20 20% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL KHDRBS2 202559 genome.wustl.edu 37 6 62887168 62887168 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_152688.2 -1 validated p.K47N 1.000 545 0% 573 16.2% 0 - benign(0.389) tolerated(0.49) neutral(0.135) NULL LAMA2 3908 genome.wustl.edu 37 6 129722454 129722454 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000426.3 +1 reviewed p.R1844H 0.967 89 0% 196 75% 0 - benign(0.001) tolerated(0.09) neutral(0.296) superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,superfamily_SSF56399 GRM1 2911 genome.wustl.edu 37 6 146351219 146351219 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000838.3 +1 reviewed p.S189N 1.000 18 0% 63 41.3% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,superfamily_SSF53822 SYNE1 23345 genome.wustl.edu 37 6 152652436 152652436 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_182961.2 -1 reviewed p.V4462M 0.960 66 0% 210 35.2% 0 - possibly_damaging(0.785) - - HMMPfam_Spectrin,HMMSmart_SM00150 TAGAP 117289 genome.wustl.edu 37 6 159457890 159457890 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_054114.3 -1 reviewed p.E389Q 0.000 25 0% 78 38.5% 0 - probably_damaging(0.996) tolerated(0.44) deleterious(0.474) NULL MAS1 4142 genome.wustl.edu 37 6 160328352 160328352 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002377.2 +1 reviewed p.L122P 1.000 58 0% 197 69% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 LPA 4018 genome.wustl.edu 37 6 161087331 161087331 + Splice_Site SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005577.2 -1 reviewed e0+2 0.091 64 0% 100 61% 0 - - - - - PLG 5340 genome.wustl.edu 37 6 161137733 161137733 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000301.3 +1 reviewed p.R242Q 0.036 53 0% 85 36.5% 0 - probably_damaging(0.957) tolerated(0.31) neutral(0.428) HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like,PatternScan_KRINGLE_1 PDE10A 10846 genome.wustl.edu 37 6 165829770 165829770 + Splice_Site SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001130690.1 -1 validated e12-1 1.000 164 0% 295 36.3% 0 - - - - - TCTE3 6991 genome.wustl.edu 37 6 170144251 170144251 + Missense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_174910.1 -1 provisional p.K80N 0.001 170 0% 180 28.9% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL PDGFA 5154 genome.wustl.edu 37 7 550552 550552 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002607.5 -1 reviewed p.N116S 1.000 4 0.000 45 0.178 52 30.7% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines GPER 2852 genome.wustl.edu 37 7 1131743 1131743 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001039966.1 +1 reviewed p.A127T 0.810 20 0% 111 28.8% 5 60% benign(0) tolerated(0.75) neutral(0.002) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TNRC18 84629 genome.wustl.edu 37 7 5402334 5402334 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080495.2 -1 provisional p.R1448W 0.997 21 0% 106 41.5% 14 21.4% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL RNF216 54476 genome.wustl.edu 37 7 5662580 5662580 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_207111.2 -1 reviewed p.R895W 0.927 14 0% 166 17.5% 33 21.2% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL LOC100131257 100131257 genome.wustl.edu 37 7 7118633 7118633 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 XM_001716696.1 -1 model p.F191L 0.432 89 0% 105 41% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers LOC340268 340268 genome.wustl.edu 37 7 9766853 9766853 + RNA SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 XR_041608.1 +1 model NULL 1.000 38 0% 118 23.7% 0 - - - - - DNAH11 8701 genome.wustl.edu 37 7 21940667 21940667 + Missense_Mutation SNP G G A rs138945257 by1000genomes TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003777.3 +1 reviewed p.R4456H 0.939 23 0% 120 15.8% 52 23% benign(0.094) tolerated(0.15) neutral(0.248) HMMPfam_Dynein_heavy CCDC126 90693 genome.wustl.edu 37 7 23651033 23651033 + Silent SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_138771.3 +1 validated p.T33 0.994 231 0% 475 37.9% 5 40% - - - NULL MRPL32 64983 genome.wustl.edu 37 7 42974677 42974677 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_031903.2 +1 reviewed p.R85H 1.000 100 0% 324 15.7% 69 18.8% benign(0.019) deleterious(0) neutral(0.446) NULL NACAD 23148 genome.wustl.edu 37 7 45120588 45120588 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000258775 -1 known p.A1480T 1.000 30 0% 176 40.3% 1 0% possibly_damaging(0.93) deleterious(0) deleterious(0.821) NULL LANCL2 55915 genome.wustl.edu 37 7 55467755 55467755 + Silent SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018697.3 +1 validated p.T212 0.716 97 0% 554 17% 14 35.7% - - - HMMPfam_LANC_like CHCHD2 51142 genome.wustl.edu 37 7 56172167 56172167 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_016139.2 -1 validated p.R18W 1.000 14 0% 52 21.2% 362 23.4% unknown(0) deleterious(0) - NULL HGF 3082 genome.wustl.edu 37 7 81350162 81350162 + Missense_Mutation SNP A A C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000601.4 -1 reviewed p.D390E 0.954 176 0% 388 34.8% 2 50% benign(0.119) tolerated(0.27) neutral(0.043) HMMSmart_SM00130 DBF4 10926 genome.wustl.edu 37 7 87516167 87516167 + Silent SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006716.3 +1 validated p.L136 0.998 594 0% 561 16.2% 4 0% - - - NULL ZAN 7455 genome.wustl.edu 37 7 100364822 100364822 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003386.1 +1 reviewed p.A1601V 0.002 17 0% 100 18% 0 - probably_damaging(0.998) tolerated(0.13) deleterious(0.727) HMMPfam_VWD,HMMSmart_SM00216 LAMB1 3912 genome.wustl.edu 37 7 107580713 107580713 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002291.2 -1 reviewed p.R1161H 1.000 18 0% 188 18.6% 58 24.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin C7orf58 79974 genome.wustl.edu 37 7 120765888 120765888 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_024913.4 +1 validated p.F359S 1.000 387 0% 1023 17.3% 0 - possibly_damaging(0.446) deleterious(0.01) deleterious(0.551) NULL PTPRZ1 5803 genome.wustl.edu 37 7 121612689 121612689 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002851.2 +1 reviewed p.C133 1.000 167 0% 384 17.7% 0 - - - - HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase ENSG00000232856 0 genome.wustl.edu 37 7 132719839 132719839 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000448615 -1 known p.A50D 1.000 57 0% 200 10% 433 0% benign(0.001) tolerated(0.54) neutral(0.007) HMMPfam_EF1G,superfamily_eEF1-gamma domain XKR5 389610 genome.wustl.edu 37 8 6679394 6679394 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_207411.4 -1 validated p.Y268 0.059 16 0% 147 19% 0 - - - - HMMPfam_XK-related NEFL 4747 genome.wustl.edu 37 8 24811706 24811706 + Silent SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000221169 -1 known p.I386 1.000 350 0% 632 37.8% 7 28.5% - - - HMMPfam_Filament,PatternScan_IF PPP2R2A 5520 genome.wustl.edu 37 8 26223851 26223851 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002717.3 +1 reviewed p.S331 1.000 287 0% 607 19.8% 20 30% - - - superfamily_WD40 repeat-like MBOAT4 619373 genome.wustl.edu 37 8 29990377 29990377 + Silent SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001100916.1 -1 validated p.V130 1.000 20 0% 97 44.3% 0 - - - - HMMPfam_MBOAT RAB11FIP1 80223 genome.wustl.edu 37 8 37734871 37734871 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001002814.2 -1 validated p.S190 0.002 233 0% 844 38.6% 3 33.3% - - - NULL TACC1 6867 genome.wustl.edu 37 8 38677969 38677969 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006283.2 +1 reviewed p.L403 0.052 72 0% 301 20.3% 2 0% - - - NULL STMN2 11075 genome.wustl.edu 37 8 80553702 80553702 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_007029.2 +1 provisional p.R69* 0.969 75 0% 254 21.3% 0 - - - - HMMPfam_Stathmin,superfamily_Stathmin LRP12 29967 genome.wustl.edu 37 8 105509325 105509325 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_013437.4 -1 reviewed p.C485 1.000 118 0% 480 14.8% 0 - - - - HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module ZFPM2 23414 genome.wustl.edu 37 8 106815021 106815021 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_012082.3 +1 reviewed p.S904N 1.000 74 0% 186 16.7% 0 - benign(0.097) tolerated(0.32) neutral(0.032) NULL ANGPT1 284 genome.wustl.edu 37 8 108359281 108359281 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001146.3 -1 reviewed p.Q114H 1.000 85 0% 530 36.6% 0 - benign(0.088) - - NULL CSMD3 114788 genome.wustl.edu 37 8 113529341 113529341 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_198123.1 -1 validated p.L1560F 0.999 149 0% 409 18.3% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain EXT1 2131 genome.wustl.edu 37 8 118817098 118817098 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000127.2 -1 reviewed p.A640T 1.000 159 0% 684 36.7% 42 50% benign(0) tolerated(0.58) neutral(0.005) HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases MYC 4609 genome.wustl.edu 37 8 128750735 128750735 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002467.4 +1 reviewed p.A91V 0.834 10 0% 54 20.4% 19 15.7% possibly_damaging(0.822) tolerated(0.08) deleterious(0.611) HMMPfam_Myc_N TSNARE1 203062 genome.wustl.edu 37 8 143425652 143425652 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_145003.3 -1 validated p.V140 1.000 7 0.000 42 0.310 1 0% - - - NULL LYNX1 66004 genome.wustl.edu 37 8 143857093 143857093 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_023946.2 -1 reviewed p.H24 0.942 18 0% 177 26% 1 0% - - - HMMPfam_UPAR_LY6,superfamily_Snake toxin-like ZFP41 286128 genome.wustl.edu 37 8 144332293 144332293 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173832.3 +1 provisional p.R94W 0.000 40 0% 180 17.2% 0 - probably_damaging(0.986) deleterious(0) deleterious(0.879) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZC3H3 23144 genome.wustl.edu 37 8 144550552 144550552 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015117.2 -1 validated p.R702K 1.000 5 0.000 68 0.485 10 10% possibly_damaging(0.533) deleterious(0.05) deleterious(0.525) HMMPfam_zf-CCCH,HMMSmart_SM00356 EPPK1 83481 genome.wustl.edu 37 8 144941902 144941902 + Silent SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_031308.1 -1 validated p.T1840 0.000 177 0% 1069 39.2% 1 100% - - - NULL CYHR1 50626 genome.wustl.edu 37 8 145678820 145678820 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_138496.1 -1 validated p.C90 1.000 23 0% 189 34.9% 15 26.6% - - - superfamily_RING/U-box PSIP1 11168 genome.wustl.edu 37 9 15472646 15472646 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001128217.1 -1 validated p.Q321K 1.000 418 0% 1047 38.3% 22 0% benign(0.008) tolerated(0.18) neutral(0.056) NULL RPS6 6194 genome.wustl.edu 37 9 19378870 19378870 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001010.2 -1 reviewed p.P62H 1.000 29 0% 67 62.7% 2636 90.8% probably_damaging(0.972) deleterious(0) deleterious(0.859) HMMPfam_Ribosomal_S6e,PatternScan_RIBOSOMAL_S6E FAM75C1 441452 genome.wustl.edu 37 9 90536784 90536784 + Silent SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001145124.1 +1 validated p.A654 0.001 57 0% 180 30% 0 - - - - NULL C9orf174 100499483 genome.wustl.edu 37 9 100075614 100075614 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020893.1 +1 predicted p.A332V 0.000 23 0% 152 32.2% 0 - probably_damaging(0.965) tolerated(0.19) neutral(0.456) NULL ASTN2 23245 genome.wustl.edu 37 9 119495724 119495724 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_198187.3 -1 reviewed p.C825 1.000 22 0% 90 34.4% 0 - - - - NULL LOC389787 389787 genome.wustl.edu 37 9 120845431 120845431 + Missense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 XM_001725747.2 -1 model p.H43L 1.000 202 0% 316 62.3% 0 - - - - HMMPfam_TCTP,superfamily_Mss4-like ZBTB34 403341 genome.wustl.edu 37 9 129642242 129642242 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001099270.1 +1 validated p.T184 0.001 26 0% 59 23.7% 0 - - - - NULL SNAPC4 6621 genome.wustl.edu 37 9 139283016 139283016 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003086.2 -1 validated p.Q335* 1.000 25 0% 176 33% 1 0% - - - HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding ARHGAP21 57584 genome.wustl.edu 37 10 24873527 24873527 + Silent SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020824.3 -1 validated p.G1897 0.001 109 0% 479 64.9% 24 100% - - - NULL PTCHD3 374308 genome.wustl.edu 37 10 27702985 27702985 + Silent SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001034842.3 -1 validated p.D65 0.000 3 0.000 17 0.824 0 - - - - NULL CDH23 64072 genome.wustl.edu 37 10 73464700 73464700 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_022124.5 +1 reviewed p.N922 0.032 4 0.000 13 0.769 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDH23 64072 genome.wustl.edu 37 10 73464825 73464825 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_022124.5 +1 reviewed p.R964Q 1.000 2 0.000 6 1.000 0 - probably_damaging(0.999) tolerated(0.63) deleterious(0.494) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CTBP2 1488 genome.wustl.edu 37 10 126683110 126683110 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_022802.2 -1 reviewed p.S776 1.000 106 0% 264 25.4% 25 36% - - - HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-bd OR51B4 79339 genome.wustl.edu 37 11 5322931 5322931 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_033179.2 -1 validated p.V82 0.000 37 0% 190 12.6% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like NAV2 89797 genome.wustl.edu 37 11 19955177 19955177 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_182964.5 +1 validated p.L463F 1.000 64 0% 136 22.8% 0 - probably_damaging(0.998) tolerated(0.15) deleterious(0.716) NULL LRRC4C 57689 genome.wustl.edu 37 11 40136527 40136527 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020929.1 -1 validated p.A439V 1.000 106 0% 192 67.2% 1 0% benign(0.097) tolerated(0.16) neutral(0.067) HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin CHST1 8534 genome.wustl.edu 37 11 45671651 45671651 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003654.4 -1 validated p.V275M 0.913 7 0.000 21 0.714 1 0% possibly_damaging(0.909) tolerated(0.07) deleterious(0.681) HMMPfam_Sulfotransfer_1,superfamily_SSF52540 ENSG00000205035 0 genome.wustl.edu 37 11 49597858 49597858 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000357667 +1 known p.Q20* 1.000 57 0% 200 25% 0 - - - - NULL OR5AS1 219447 genome.wustl.edu 37 11 55798011 55798011 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001001921.1 +1 provisional p.M39I 0.010 176 0% 131 30.5% 0 - benign(0) deleterious(0.02) neutral(0.383) superfamily_SSF81321 ENSG00000196779 0 genome.wustl.edu 37 11 57876778 57876778 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000357944 -1 known p.A119V 1.000 23 0% 18 22.2% 0 - - - - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 AHNAK 79026 genome.wustl.edu 37 11 62289509 62289509 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001620.1 -1 validated p.P4127L 0.936 154 0% 229 30.6% 2 0% probably_damaging(0.96) tolerated(0.14) deleterious(0.653) NULL SF1 7536 genome.wustl.edu 37 11 64535057 64535057 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000413725 -1 known p.W11* 1.000 9 0.000 83 0.639 49 87.7% unknown(0) deleterious(0.01) - NULL PCNXL3 399909 genome.wustl.edu 37 11 65387853 65387853 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_032223.2 +1 validated p.Y684 0.995 13 0% 74 37.8% 2 0% - - - NULL LRP5 4041 genome.wustl.edu 37 11 68192574 68192574 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002335.2 +1 reviewed p.L1081M 1.000 19 0% 41 73.2% 20 100% benign(0.001) tolerated(0.74) neutral(0.002) HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain MRGPRF 116535 genome.wustl.edu 37 11 68773002 68773002 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001098515.1 -1 validated p.W259* 1.000 9 0.000 46 0.696 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like INPPL1 3636 genome.wustl.edu 37 11 71944186 71944186 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001567.3 +1 reviewed p.W673* 1.000 27 0% 111 65.8% 3 33.3% - - - HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos FAT3 120114 genome.wustl.edu 37 11 92257932 92257932 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001008781.2 +1 validated p.N1142S 1.000 35 0% 118 55.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like TECTA 7007 genome.wustl.edu 37 11 121028594 121028594 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005422.2 +1 reviewed p.R1450 1.000 11 0% 28 35.7% 0 - - - - HMMSmart_SM00215 LEPREL2 10536 genome.wustl.edu 37 12 6938023 6938024 + Frame_Shift_Ins INS - - G rs112583020 byCluster;by1000genomes TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000290510 +1 known p.R141fs 1.000:1.000 - - - - - - - - - NULL C1RL 51279 genome.wustl.edu 37 12 7249140 7249140 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_016546.2 -1 validated p.G437 0.001 25 0% 162 28.4% 6 16.6% - - - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER GSG1 83445 genome.wustl.edu 37 12 13238101 13238101 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080555.1 -1 validated p.E275* 1.000 43 0% 108 20.4% 0 - - - - NULL SLC38A2 54407 genome.wustl.edu 37 12 46757562 46757562 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018976.4 -1 validated p.A334V 1.000 260 0% 396 21.2% 9 0% benign(0.001) tolerated(0.47) neutral(0.011) HMMPfam_Aa_trans ADCY6 112 genome.wustl.edu 37 12 49168472 49168472 + Splice_Site SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015270.3 -1 reviewed e12+2 0.961 32 0% 215 25.6% 0 - - - - - NCKAP5L 57701 genome.wustl.edu 37 12 50195699 50195699 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001037806.3 -1 validated p.R95W 1.000 34 0% 359 21.7% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KRT7 3855 genome.wustl.edu 37 12 52635264 52635265 + Frame_Shift_Del DEL AG AG - novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005556.3 +1 reviewed p.E235fs 0.001:1.000 - - - - - - - - - superfamily_Prefoldin,HMMPfam_Filament KRT85 3891 genome.wustl.edu 37 12 52756743 52756743 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002283.3 -1 reviewed p.T324 0.803 49 0% 332 22% 0 - - - - HMMPfam_Filament KRT6C 286887 genome.wustl.edu 37 12 52867365 52867365 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173086.4 -1 reviewed p.G53* 0.649 51 0% 159 13.2% 0 - - - - NULL MARS 4141 genome.wustl.edu 37 12 57884413 57884413 + Silent SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_004990.2 +1 reviewed p.P252 0.097 61 0% 259 40.5% 21 61.9% - - - NULL PTPRB 5787 genome.wustl.edu 37 12 70954558 70954558 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001109754.1 -1 reviewed p.L1442P 0.896 119 0% 277 24.2% 2 50% possibly_damaging(0.609) tolerated(0.38) neutral(0.228) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III GLIPR1L1 256710 genome.wustl.edu 37 12 75737520 75737520 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_152779.2 +1 provisional p.Q74 0.001 148 0% 265 29.1% 0 - - - - HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular C12orf50 160419 genome.wustl.edu 37 12 88376937 88376937 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_152589.1 -1 predicted p.W388R 1.000 350 0% 254 20.5% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL POC1B 282809 genome.wustl.edu 37 12 89890993 89890993 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_172240.1 -1 provisional p.A76V 1.000 46 0% 227 22.9% 6 16.6% probably_damaging(0.979) deleterious(0.04) deleterious(0.771) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 NUDT4 11163 genome.wustl.edu 37 12 93788488 93788488 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_199040.2 +1 reviewed p.Y68C 1.000 66 0% 301 49.2% 12 75% probably_damaging(0.988) tolerated(0.27) deleterious(0.471) HMMPfam_NUDIX,superfamily_NUDIX_hydrolase,PatternScan_NUDIX NEDD1 121441 genome.wustl.edu 37 12 97328801 97328801 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001135175.1 +1 validated p.G186 1.000 122 0% 297 22.9% 1 0% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1 GAS2L3 283431 genome.wustl.edu 37 12 100994274 100994274 + Missense_Mutation SNP G G C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_174942.1 +1 provisional p.A45P 1.000 83 0% 341 20.5% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) superfamily_Calponin-homology domain CH-domain CHST11 50515 genome.wustl.edu 37 12 105150997 105150997 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018413.5 +1 validated p.A159T 0.968 16 0% 86 27.9% 13 7.6% benign(0) tolerated(0.45) neutral(0.012) HMMPfam_Sulfotransfer_2 LOC341378 341378 genome.wustl.edu 37 12 106565450 106565450 + Missense_Mutation SNP A A C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 XM_001715424.1 +1 model p.E98D 1.000 270 0% 343 28.6% 0 - - - - NULL ACACB 32 genome.wustl.edu 37 12 109696872 109696872 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001093.3 +1 reviewed p.M2152T 0.998 35 0% 169 25.4% 4 0% possibly_damaging(0.671) deleterious(0) deleterious(0.682) HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase C12orf51 283450 genome.wustl.edu 37 12 112622300 112622300 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001109662.2 -1 validated p.S3068 0.981 20 0% 84 33.3% 3 66.6% - - - NULL PTPN11 5781 genome.wustl.edu 37 12 112940031 112940031 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002834.3 +1 reviewed p.P561 0.171 44 0% 149 24.8% 8 25% - - - NULL MSI1 4440 genome.wustl.edu 37 12 120805881 120805881 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002442.2 -1 reviewed p.V66A 1.000 6 0.000 89 0.258 8 25% possibly_damaging(0.947) deleterious(0) deleterious(0.835) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD ZNF10 7556 genome.wustl.edu 37 12 133732893 133732893 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015394.4 +1 reviewed p.C354Y 1.000 206 0% 341 12.3% 1 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers MTUS2 23281 genome.wustl.edu 37 13 29674997 29674997 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001033602.2 +1 validated p.P855R 0.997 15 0% 28 67.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FBXL3 26224 genome.wustl.edu 37 13 77581918 77581918 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_012158.2 -1 reviewed p.L217I 1.000 52 0% 82 28% 5 20% possibly_damaging(0.783) deleterious(0.03) deleterious(0.657) superfamily_SSF52047 MYCBP2 23077 genome.wustl.edu 37 13 77651301 77651301 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015057.4 -1 validated p.F3864L 1.000 212 0% 224 28.1% 1 100% probably_damaging(0.999) tolerated(0.24) deleterious(0.528) NULL SLAIN1 122060 genome.wustl.edu 37 13 78335193 78335193 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001040153.2 +1 validated p.A308T 1.000 28 0% 97 30.9% 0 - benign(0.3) tolerated(0.1) neutral(0.379) NULL OR4N2 390429 genome.wustl.edu 37 14 20295658 20295658 + Silent SNP G G C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001004723.1 +1 provisional p.L17 0.002 246 0% 253 61.7% 0 - - - - superfamily_SSF81321 CEBPE 1053 genome.wustl.edu 37 14 23586714 23586714 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001805.2 -1 reviewed p.G276 0.996 12 0% 63 34.9% 0 - - - - NULL TRIM9 114088 genome.wustl.edu 37 14 51467494 51467494 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015163.5 -1 reviewed p.S457 0.996 53 0% 233 29.6% 3 33.3% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III BMP4 652 genome.wustl.edu 37 14 54418720 54418720 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001202.3 -1 reviewed p.S74N 1.000 10 0% 29 24.1% 1 0% probably_damaging(0.999) tolerated(0.19) deleterious(0.540) HMMPfam_TGFb_propeptide PSMA3 5684 genome.wustl.edu 37 14 58724681 58724681 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002788.2 +1 reviewed p.Y123 1.000 163 0% 310 28.7% 226 45.1% - - - HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) VRTN 55237 genome.wustl.edu 37 14 74823606 74823606 + Silent SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018228.2 +1 validated p.S40 0.998 15 0% 83 31.3% 0 - - - - NULL BATF 10538 genome.wustl.edu 37 14 76012937 76012937 + Frame_Shift_Del DEL C C - novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006399.3 +1 reviewed p.S102fs 0.829 - - - - - - - - - NULL TTC7B 145567 genome.wustl.edu 37 14 91059956 91059956 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001010854.1 -1 provisional p.T661A 1.000 15 0% 65 58.5% 1 0% benign(0.206) tolerated(0.29) neutral(0.049) superfamily_TPR-like IGHV4-61 28391 genome.wustl.edu 37 14 107095423 107095423 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000390630 -1 known p.S19 0.987 106 0% 66 10.6% 2 0% - - - NULL OR4N4 283694 genome.wustl.edu 37 15 22382600 22382600 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001005241.1 +1 provisional p.F43S 0.895 652 0% 1154 11.6% 0 - benign(0.045) tolerated(0.17) neutral(0.061) HMMPfam_7tm_1,superfamily_SSF81321 MGA 23269 genome.wustl.edu 37 15 41962146 41962146 + Missense_Mutation SNP A A T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080541.2 +1 validated p.I352F 0.969 74 0% 91 45.1% 0 - benign(0.054) deleterious(0) neutral(0.448) NULL PLA2G4E 123745 genome.wustl.edu 37 15 42285138 42285138 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080490.1 -1 provisional p.R394C 0.997 26 0% 110 21.8% 0 - probably_damaging(0.979) deleterious(0.01) deleterious(0.828) HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like PLA2G4D 283748 genome.wustl.edu 37 15 42375408 42375408 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_178034.3 -1 validated p.S220 0.006 14 0% 97 27.8% 0 - - - - NULL FBN1 2200 genome.wustl.edu 37 15 48764827 48764827 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000138.4 -1 reviewed p.Q1419 1.000 23 0% 153 20.3% 0 - - - - HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin LEO1 123169 genome.wustl.edu 37 15 52258622 52258622 + Silent SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_138792.2 -1 provisional p.D46 0.007 155 0% 478 23% 9 11.1% - - - NULL CLPX 10845 genome.wustl.edu 37 15 65448152 65448152 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006660.3 -1 provisional p.E397K 1.000 269 0% 582 23% 8 75% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMSmart_SM00382,HMMPfam_AAA_2,superfamily_P-loop containing nucleoside triphosphate hydrolases RPL4 6124 genome.wustl.edu 37 15 66792697 66792697 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000968.2 -1 reviewed p.M284T 1.000 161 0% 338 24.6% 1433 32.4% possibly_damaging(0.694) deleterious(0) deleterious(0.694) NULL CD276 80381 genome.wustl.edu 37 15 74000686 74000686 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001024736.1 +1 validated p.P459H 0.994 66 0% 405 24.4% 19 15.7% benign(0.001) tolerated(0.16) neutral(0.059) NULL PTPN9 5780 genome.wustl.edu 37 15 75782565 75782565 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002833.2 -1 reviewed p.R349Q 0.518 132 0% 492 25.4% 6 0% benign(0) tolerated(0.56) neutral(0.006) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 ADAMTS7 11173 genome.wustl.edu 37 15 79083544 79083544 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014272.3 -1 reviewed p.P281T 1.000 16 0% 98 28.6% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" ADAMTSL3 57188 genome.wustl.edu 37 15 84694125 84694125 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_207517.2 +1 validated p.D1531E 0.107 87 0% 338 46.2% 0 - benign(0.002) tolerated(1) - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat C15orf42 90381 genome.wustl.edu 37 15 90119236 90119236 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_152259.3 +1 validated p.A140V 0.052 6 0.000 14 0.357 0 - benign(0.42) tolerated(0.16) neutral(0.196) NULL NPRL3 8131 genome.wustl.edu 37 16 136809 136809 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001077350.1 -1 validated p.R535H 0.340 15 0% 65 70.8% 20 95% - - - HMMPfam_UPF0171 LOC342346 342346 genome.wustl.edu 37 16 4626297 4626297 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001145011.1 +1 predicted p.A606T 0.017 12 0% 36 69.4% 0 - benign(0.004) deleterious(0) neutral(0.445) NULL GRIN2A 2903 genome.wustl.edu 37 16 9862843 9862843 + Silent SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000833.3 -1 reviewed p.V820 0.987 19 0% 73 39.7% 0 - - - - HMMPfam_Lig_chan ERCC4 2072 genome.wustl.edu 37 16 14041843 14041843 + Missense_Mutation SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005236.2 +1 reviewed p.R797I 0.041 142 0% 265 35.5% 0 - possibly_damaging(0.687) deleterious(0) deleterious(0.690) superfamily_Restrict_endonuc_II-like_core NOMO1 23420 genome.wustl.edu 37 16 14989879 14989879 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000456867 +1 known p.R1239W 0.000 252 0% 468 17.1% 34 17.6% unknown(0) deleterious(0) - NULL MVP 9961 genome.wustl.edu 37 16 29841979 29841979 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005115.3 +1 reviewed p.R37W 1.000 25 0% 154 30.5% 50 36% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Vault ZNF688 146542 genome.wustl.edu 37 16 30581565 30581565 + Missense_Mutation SNP G G A rs188824106 by1000genomes TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_145271.3 -1 validated p.P168L 0.001 8 0.000 43 0.558 5 60% possibly_damaging(0.777) tolerated(0.37) neutral(0.309) NULL ZNF646 9726 genome.wustl.edu 37 16 31092802 31092802 + Silent SNP T T G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014699.3 +1 validated p.L1719 0.863 34 0% 106 79.2% 2 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ENSG00000214627 0 genome.wustl.edu 37 16 32005809 32005809 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000398685 +1 known p.R390W 0.813 23 0% 65 58.5% 0 - - - - HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP ABCC11 85320 genome.wustl.edu 37 16 48221195 48221195 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_032583.3 -1 reviewed p.A950 0.000 37 0% 161 62.7% 0 - - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain EDC4 23644 genome.wustl.edu 37 16 67915236 67915236 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014329.3 +1 validated p.P902L 0.998 15 0% 62 51.6% 14 100% possibly_damaging(0.521) tolerated(0.22) neutral(0.217) NULL WDR59 79726 genome.wustl.edu 37 16 74943405 74943405 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_030581.3 -1 validated p.G546R 1.000 32 0% 99 64.6% 2 100% possibly_damaging(0.663) tolerated(0.08) deleterious(0.534) NULL FAM57A 79850 genome.wustl.edu 37 17 641253 641253 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_024792.1 +1 provisional p.A125V 0.000 35 0% 178 32% 19 52.6% benign(0.001) tolerated(1) - HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724 WRAP53 55135 genome.wustl.edu 37 17 7592200 7592200 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018081.2 +1 validated p.P78 0.000 78 0% 108 58.3% 4 100% - - - NULL KIAA0100 9703 genome.wustl.edu 37 17 26961002 26961002 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014680.2 -1 validated p.R1058Q 1.000 13 0% 48 60.4% 6 50% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Fmp27_GFWDK FKBP10 60681 genome.wustl.edu 37 17 39978633 39978633 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000455106 +1 known p.T378M 0.997 17 0% 93 26.9% 188 40.9% - - - HMMSmart_SM00054 KAT2A 2648 genome.wustl.edu 37 17 40269588 40269588 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_021078.2 -1 validated p.A485 0.989 3 0.000 10 0.800 27 100% - - - NULL INTS2 57508 genome.wustl.edu 37 17 59944942 59944942 + Silent SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020748.2 -1 validated p.I1197 1.000 158 0% 169 28.4% 0 - - - - NULL SDK2 54549 genome.wustl.edu 37 17 71434110 71434110 + Silent SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000416616 -1 known p.S208C 0.316 18 0% 30 53.3% 1 100% - - - HMMSmart_SM00409,superfamily_Immunoglobulin TCEB3C 162699 genome.wustl.edu 37 18 44555147 44555147 + Missense_Mutation SNP T T G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_145653.3 -1 reviewed p.E356A 0.000 70 0% 620 16.5% 0 - benign(0.001) deleterious(0.05) neutral(0.345) HMMPfam_Elongin_A HMHA1 23526 genome.wustl.edu 37 19 1085857 1085858 + In_Frame_Ins INS - - GGACGA novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_012292.2 +1 validated p.1092in_frame_insED 0.000:0.000 - - - - - - - - - NULL SH3GL1 6455 genome.wustl.edu 37 19 4362702 4362702 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003025.2 -1 provisional p.E254K 1.000 13 0% 62 21% 41 51.2% benign(0.111) tolerated(0.08) neutral(0.308) NULL PTPRS 5802 genome.wustl.edu 37 19 5215577 5215577 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002850.3 -1 reviewed p.A1376T 0.854 24 0% 90 62.2% 5 40% benign(0) tolerated(0.91) - superfamily_(Phosphotyrosine protein) phosphatases II MUC16 94025 genome.wustl.edu 37 19 9065283 9065283 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_024690.2 -1 validated p.E7388G 0.000 127 0% 240 32.5% 0 - unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9074416 9074416 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_024690.2 -1 validated p.Q4344* 0.000 108 0% 355 74.9% 0 - - - - NULL MUC16 94025 genome.wustl.edu 37 19 9088485 9088485 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_024690.2 -1 validated p.V1110 0.000 100 0% 242 28.9% 0 - - - - NULL OR1M1 125963 genome.wustl.edu 37 19 9204070 9204070 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001004456.1 +1 provisional p.S50R 0.702 76 0% 275 67.6% 0 - possibly_damaging(0.81) tolerated(0.5) neutral(0.315) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like KEAP1 9817 genome.wustl.edu 37 19 10600021 10600022 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_012289.3 -1 reviewed p.I518fs 0.555:0.047 - - - - - - - - - HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central ZNF100 163227 genome.wustl.edu 37 19 21909506 21909506 + Missense_Mutation SNP C C G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173531.3 -1 validated p.W536C 1.000 164 0% 181 29.3% 2 0% possibly_damaging(0.796) deleterious(0.04) deleterious(0.648) superfamily_C2H2 and C2HC zinc fingers CEBPG 1054 genome.wustl.edu 37 19 33870580 33870580 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001806.2 +1 reviewed p.G145 0.027 70 0% 182 29.7% 44 43.1% - - - NULL ZNF607 84775 genome.wustl.edu 37 19 38189192 38189192 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_032689.4 -1 validated p.D614N 1.000 124 0% 145 26.2% 0 - possibly_damaging(0.624) deleterious(0) deleterious(0.662) superfamily_C2H2 and C2HC zinc fingers SIPA1L3 23094 genome.wustl.edu 37 19 38621400 38621400 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015073.1 +1 validated p.G1044D 1.000 14 0% 47 27.7% 8 75% probably_damaging(0.999) deleterious(0.05) deleterious(0.836) NULL GSK3A 2931 genome.wustl.edu 37 19 42738559 42738559 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_019884.2 -1 validated p.Y284H 1.000 50 0% 162 30.2% 33 51.5% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PSG8 440533 genome.wustl.edu 37 19 43268333 43268333 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_182707.2 -1 validated p.V55 0.005 394 0% 804 33.7% 0 - - - - HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 PSG11 5680 genome.wustl.edu 37 19 43528919 43528919 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_002785.2 -1 validated p.G118 0.015 334 0% 723 26% 0 - - - - HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin QPCTL 54814 genome.wustl.edu 37 19 46196122 46196122 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_017659.3 +1 validated p.G54D 0.471 6 0.000 16 0.688 0 - probably_damaging(0.976) deleterious(0) deleterious(0.863) NULL PNMAL2 57469 genome.wustl.edu 37 19 46998049 46998049 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020709.1 -1 validated p.A225V 0.001 36 0% 72 36.1% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL NR1H2 7376 genome.wustl.edu 37 19 50881931 50881931 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_007121.4 +1 validated p.Q209K 0.903 17 0% 68 26.5% 24 45.8% benign(0.139) tolerated(0.62) neutral(0.016) superfamily_Nuclear receptor ligand-binding domain SIGLEC7 27036 genome.wustl.edu 37 19 51647666 51647666 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014385.2 +1 validated p.L146S 0.080 47 0% 188 67% 0 - probably_damaging(0.984) tolerated(0.08) deleterious(0.730) HMMPfam_V-set,superfamily_Immunoglobulin ZNF808 388558 genome.wustl.edu 37 19 53057924 53057924 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001039886.3 +1 validated p.H585 0.289 188 0% 94 19.1% 2 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers AURKC 6795 genome.wustl.edu 37 19 57746705 57746705 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001015878.1 +1 reviewed p.L284 0.952 91 0% 184 63.6% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ZNF460 10794 genome.wustl.edu 37 19 57802659 57802659 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006635.3 +1 validated p.K250 1.000 74 0% 94 28.7% 3 0% - - - superfamily_SSF57667 ZNF587 84914 genome.wustl.edu 37 19 58353441 58353441 + Missense_Mutation SNP A A T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 XM_002343662.1 +1 model p.M411L 0.000 187 0% 173 24.9% 0 - - - - HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TRIM28 10155 genome.wustl.edu 37 19 59058829 59058829 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005762.2 +1 reviewed p.D225N 1.000 35 0% 86 31.4% 61 39.3% possibly_damaging(0.473) deleterious(0.03) deleterious(0.520) HMMPfam_zf-B_box,HMMSmart_SM00336 CPXM1 56265 genome.wustl.edu 37 20 2776718 2776718 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_019609.4 -1 reviewed p.L444 0.995 32 0% 298 18.1% 12 0% - - - HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases NAA20 51126 genome.wustl.edu 37 20 20007511 20007511 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_016100.3 +1 validated p.R85C 0.999 119 0% 695 40.3% 210 38.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat) FAM83C 128876 genome.wustl.edu 37 20 33875395 33875395 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_178468.4 -1 validated p.R396H 0.040 36 0% 394 16.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL LOC100288393 100288393 genome.wustl.edu 37 20 50769936 50769936 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 XM_002343724.1 +1 model p.A130T 1.000 24 0% 109 28.4% 4 50% - - - NULL CSTF1 1477 genome.wustl.edu 37 20 54978735 54978735 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001033521.1 +1 reviewed p.S416 0.997 19 0% 185 37.8% 31 58% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 CASS4 57091 genome.wustl.edu 37 20 55027941 55027941 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020356.3 +1 validated p.P570L 1.000 66 0% 262 39.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Serine_rich SLCO4A1 28231 genome.wustl.edu 37 20 61288143 61288143 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_016354.3 +1 validated p.A113T 1.000 5 0.000 33 0.364 5 40% benign(0.008) tolerated(0.06) neutral(0.323) HMMPfam_OATP,superfamily_MFS general substrate transporter PRIC285 85441 genome.wustl.edu 37 20 62203546 62203546 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001037335.2 -1 reviewed p.A65T 0.000 8 0.000 56 0.411 1 100% probably_damaging(0.99) tolerated(0.11) deleterious(0.713) NULL KRTAP11-1 337880 genome.wustl.edu 37 21 32253406 32253406 + Silent SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_175858.2 -1 validated p.G146 0.056 14 0% 74 40.5% 0 - - - - HMMPfam_PMG MRAP 56246 genome.wustl.edu 37 21 33686912 33686912 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_206898.1 +1 reviewed p.R86Q 0.008 51 0% 132 25% 9 22.2% benign(0.091) tolerated(0.16) neutral(0.066) NULL URB1 9875 genome.wustl.edu 37 21 33694240 33694240 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014825.2 -1 validated p.Q1785 0.998 4 0.000 77 0.338 4 25% - - - superfamily_ARM repeat URB1 9875 genome.wustl.edu 37 21 33694875 33694875 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_014825.2 -1 validated p.K1751 1.000 29 0% 108 30.6% 4 25% - - - superfamily_ARM repeat LOC100288232 100288232 genome.wustl.edu 37 21 43274799 43274799 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 XM_002343752.1 +1 model p.A169T 0.998 4 0.000 19 0.211 1 0% - - - NULL SLC37A1 54020 genome.wustl.edu 37 21 43974219 43974219 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_018964.3 +1 reviewed p.K272 0.991 151 0% 165 27.9% 10 50% - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter SIK1 150094 genome.wustl.edu 37 21 44838264 44838264 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173354.3 -1 validated p.S540 0.005 5 0.000 25 0.280 3 33.3% - - - NULL SIK1 150094 genome.wustl.edu 37 21 44838995 44838995 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173354.3 -1 validated p.E456D 1.000 8 0.000 23 0.652 3 100% benign(0.054) tolerated(0.36) neutral(0.024) NULL MCM3AP 8888 genome.wustl.edu 37 21 47680752 47680752 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_003906.3 -1 reviewed p.R1179H 0.001 61 0% 289 28.7% 10 60% benign(0.001) tolerated(0.13) neutral(0.253) NULL ENSG00000215575 0 genome.wustl.edu 37 22 17063501 17063501 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000400600 -1 known p.G17S 0.954 63 0% 115 22.6% 0 - - - - HMMPfam_CaKB IGLV4-3 28786 genome.wustl.edu 37 22 23213894 23213894 + Silent SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000390318 +1 known p.L17 0.001 13 0% 41 70.7% 0 - - - - NULL HPS4 89781 genome.wustl.edu 37 22 26864583 26864583 + Silent SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_022081.4 -1 reviewed p.V201 0.679 28 0% 160 65% 3 100% - - - NULL ZC3H7B 23264 genome.wustl.edu 37 22 41735992 41735992 + Missense_Mutation SNP A A G novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_017590.4 +1 reviewed p.K330R 1.000 16 0% 29 65.5% 3 100% possibly_damaging(0.556) tolerated(0.36) neutral(0.209) NULL PKDREJ 10343 genome.wustl.edu 37 22 46657240 46657240 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_006071.1 -1 reviewed p.Q660H 0.999 45 0% 45 40% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_REJ TUBGCP6 85378 genome.wustl.edu 37 22 50662577 50662577 + Nonsense_Mutation SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020461.3 -1 reviewed p.K755* 0.982 27 0% 76 64.5% 0 - - - - HMMPfam_Spc97_Spc98 ASMTL 8623 genome.wustl.edu 37 X 1540671 1540671 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_004192.3 -1 reviewed p.G375 0.990 152 0% 586 22.2% 8 37.5% - - - HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases MXRA5 25878 genome.wustl.edu 37 X 3238160 3238160 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_015419.3 -1 reviewed p.L1856F 0.004 85 0% 235 25.5% 2 100% benign(0.003) tolerated(0.07) neutral(0.319) HMMPfam_I-set,superfamily_Immunoglobulin ATXN3L 92552 genome.wustl.edu 37 X 13337838 13337838 + Silent SNP G G T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001135995.1 -1 validated p.T72 0.995 246 0.4% 474 22.2% 0 - - - - HMMPfam_Josephin GLRA2 2742 genome.wustl.edu 37 X 14625319 14625319 + Missense_Mutation SNP G G C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001118885.1 +1 reviewed p.G215A 1.000 254 0% 568 27.5% 0 - possibly_damaging(0.755) tolerated(0.27) neutral(0.312) HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like RBBP7 5931 genome.wustl.edu 37 X 16867363 16867363 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000444437 -1 known p.R172C 0.001 158 0% 563 45.5% 0 - benign(0.007) tolerated(0.07) neutral(0.319) NULL GPR64 10149 genome.wustl.edu 37 X 19031928 19031928 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001079858.2 -1 validated p.I325 0.118 71 0% 574 23.7% 1 100% - - - NULL LOC100289205 100289205 genome.wustl.edu 37 X 23353157 23353157 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 XM_002343809.1 -1 model p.Q56* 1.000 14 0% 78 26.9% 0 - - - - NULL DMD 1756 genome.wustl.edu 37 X 32486679 32486679 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_004006.2 -1 reviewed p.S1033F 0.820 181 0% 320 18.1% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat FAM47B 170062 genome.wustl.edu 37 X 34961333 34961333 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_152631.2 +1 validated p.H129N 0.005 80 0% 236 28% 0 - possibly_damaging(0.485) deleterious(0.01) deleterious(0.567) NULL FAM47C 442444 genome.wustl.edu 37 X 37028177 37028177 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001013736.2 +1 validated p.T565I 0.016 77 0% 193 20.2% 0 - unknown(0) deleterious(0.03) - NULL ZNF81 347344 genome.wustl.edu 37 X 47775885 47775885 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_007137.3 +1 reviewed p.E614K 0.996 181 0% 322 19.6% 0 - probably_damaging(0.999) tolerated(0.1) deleterious(0.777) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 SLC35A2 7355 genome.wustl.edu 37 X 48761926 48761926 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001032289.1 -1 provisional p.H224Y 0.002 23 0% 119 27.7% 19 89.4% unknown(0) - - NULL CACNA1F 778 genome.wustl.edu 37 X 49062095 49062095 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_005183.2 -1 reviewed p.A1895V 0.999 23 0% 125 22.4% 0 - benign(0.34) deleterious(0) deleterious(0.552) NULL SHROOM4 57477 genome.wustl.edu 37 X 50376870 50376870 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020717.3 -1 reviewed p.Q735* 0.985 48 0% 81 13.6% 0 - - - - NULL ITIH6 347365 genome.wustl.edu 37 X 54785189 54785189 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_198510.2 -1 reviewed p.R440C 0.998 25 0% 165 52.7% 0 - benign(0.186) deleterious(0) neutral(0.462) HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 ZXDA 7789 genome.wustl.edu 37 X 57935263 57935263 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_007156.4 -1 reviewed p.S531F 1.000 137 0% 487 17% 1 0% probably_damaging(0.978) tolerated(0.09) deleterious(0.717) PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 EFNB1 1947 genome.wustl.edu 37 X 68058623 68058623 + Silent SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_004429.4 +1 reviewed p.L98 1.000 29 0% 200 22.5% 5 100% - - - HMMPfam_Ephrin,superfamily_Cupredoxin PGK1 5230 genome.wustl.edu 37 X 77380410 77380410 + Missense_Mutation SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000291.3 +1 reviewed p.E326K 1.000 96 0% 519 48.9% 247 0% benign(0) tolerated(0.29) neutral(0.029) HMMPfam_PGK,superfamily_Phosphoglycerate kinase POF1B 79983 genome.wustl.edu 37 X 84537293 84537293 + Silent SNP G G A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_024921.3 -1 reviewed p.L560 0.992 359 0% 684 22.1% 7 0% - - - NULL RAB40AL 282808 genome.wustl.edu 37 X 102192955 102192955 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001031834.1 +1 reviewed p.R237* 1.000 115 0% 398 24.9% 0 - - - - NULL GPR119 139760 genome.wustl.edu 37 X 129518744 129518744 + Silent SNP A A C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_178471.2 -1 reviewed p.T226 0.969 31 0% 178 41.6% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 MIR450A1 554214 genome.wustl.edu 37 X 133674415 133674415 + RNA SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 ENST00000362262 -1 known NULL 0.957 467 0% 603 25.2% 0 - - - - - ATP11C 286410 genome.wustl.edu 37 X 138823216 138823216 + Missense_Mutation SNP T T C novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_173694.4 -1 validated p.H1026R 1.000 175 0% 291 26.1% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL MAGEA4 4103 genome.wustl.edu 37 X 151092411 151092411 + Missense_Mutation SNP A A T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001011548.1 +1 reviewed p.E92V 0.000 68 0% 121 22.3% 3 33.3% probably_damaging(0.977) tolerated(0.16) deleterious(0.478) NULL ZNF275 10838 genome.wustl.edu 37 X 152612813 152612813 + Missense_Mutation SNP C C A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_001080485.2 +1 validated p.L224I 0.284 36 0% 170 20% 0 - benign(0.007) deleterious(0) neutral(0.445) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TREX2 11219 genome.wustl.edu 37 X 152710760 152710760 + Silent SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_080701.3 -1 reviewed p.P43 0.000 7 0.000 96 0.240 0 - - - - HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T ABCD1 215 genome.wustl.edu 37 X 153005561 153005561 + Missense_Mutation SNP C C T novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_000033.3 +1 reviewed p.H502Y 1.000 15 0% 99 20.2% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540 OPN1LW 5956 genome.wustl.edu 37 X 153409871 153409871 + Splice_Site SNP T T A novel TCGA-BS-A0TE-01A-11D-A10B-09 TCGA-BS-A0TE-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx af96db5a-684f-41d1-a910-5a5193393d9c 362e74bd-a76c-4303-accb-fb77c488cfd9 NM_020061.4 +1 reviewed e1+2 1.000 36 0% 253 22.5% 0 - - - - -