Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain PUSL1 126789 genome.wustl.edu 37 1 1244876 1244876 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153339.1 +1 provisional p.R122 0.060 8 0.000 30 0.400 11 36.3% - - - HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase CCNL2 81669 genome.wustl.edu 37 1 1325671 1325671 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000408952 -1 known p.V92I 1.000 43 0% 126 53.2% 325 48.3% unknown(0) tolerated(0.08) - NULL KIAA1751 85452 genome.wustl.edu 37 1 1888075 1888075 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080484.1 -1 predicted p.Q667R 0.000 19 0% 79 38% 0 - probably_damaging(0.959) tolerated(0.84) neutral(0.403) NULL MEGF6 1953 genome.wustl.edu 37 1 3407477 3407477 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001409.3 -1 validated p.S1521 0.962 11 0% 60 56.7% 0 - - - - superfamily_EGF/Laminin MEGF6 1953 genome.wustl.edu 37 1 3422687 3422687 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001409.3 -1 validated p.R635C 1.000 7 0.000 41 0.512 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00180,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin CHD5 26038 genome.wustl.edu 37 1 6185196 6185196 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015557.1 -1 provisional p.V1453A 1.000 16 0% 41 31.7% 0 - possibly_damaging(0.81) tolerated(0.05) deleterious(0.650) HMMPfam_DUF1086 ESPN 83715 genome.wustl.edu 37 1 6505946 6505946 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031475.2 +1 reviewed p.Q472R 1.000 7 0.000 19 0.526 0 - possibly_damaging(0.941) deleterious(0.01) deleterious(0.792) NULL CAMTA1 23261 genome.wustl.edu 37 1 6880285 6880285 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015215.1 +1 validated p.V30 1.000 91 0% 96 41.7% 146 55.4% - - - NULL RERE 473 genome.wustl.edu 37 1 8526014 8526014 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001042681.1 -1 reviewed p.I392V 1.000 11 0% 33 51.5% 4 25% unknown(0) tolerated(0.26) - HMMSmart_SM00717,superfamily_Homeodomain-like H6PD 9563 genome.wustl.edu 37 1 9324383 9324383 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004285.3 +1 reviewed p.W611R 1.000 5 0.000 15 0.533 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glucosamine_iso,superfamily_SSF100950 CLCN6 1185 genome.wustl.edu 37 1 11888618 11888618 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001286.2 +1 reviewed p.C353F 1.000 85 0% 136 51.5% 0 - probably_damaging(0.964) tolerated(0.69) neutral(0.408) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel PLOD1 5351 genome.wustl.edu 37 1 12027091 12027091 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000302.2 +1 reviewed p.C566 0.998 38 0% 169 43.2% 135 40.7% - - - HMMSmart_P4Hc FHAD1 114827 genome.wustl.edu 37 1 15627815 15627815 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052929.1 +1 provisional p.S265R 0.059 43 0% 49 44.9% 0 - probably_damaging(0.959) tolerated(0.66) neutral(0.405) NULL FHAD1 114827 genome.wustl.edu 37 1 15627853 15627853 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052929.1 +1 provisional p.N277K 0.000 40 0% 45 51.1% 0 - benign(0.006) tolerated(0.73) neutral(0.002) NULL PLEKHM2 23207 genome.wustl.edu 37 1 16051897 16051897 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015164.2 +1 validated p.T266 0.988 8 0.000 45 0.600 6 16.6% - - - NULL IGSF21 84966 genome.wustl.edu 37 1 18618428 18618428 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000412684 +1 known p.T37A 0.836 21 0% 45 35.6% 0 - - - - NULL TAS1R2 80834 genome.wustl.edu 37 1 19180815 19180815 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152232.2 -1 validated p.R383 0.072 24 0% 89 42.7% 0 - - - - HMMPfam_ANF_receptor,superfamily_SSF53822 ECE1 1889 genome.wustl.edu 37 1 21553687 21553687 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001397.2 -1 reviewed p.V605A 1.000 58 0% 109 36.7% 10 30% possibly_damaging(0.462) deleterious(0) deleterious(0.596) "PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain" EPHB2 2048 genome.wustl.edu 37 1 23233421 23233421 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004442.6 +1 reviewed p.E704* 1.000 8 0.000 25 0.400 0 - - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like KDM1A 23028 genome.wustl.edu 37 1 23397737 23397737 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015013.3 +1 reviewed p.K454R 1.000 52 0% 44 50% 6 50% benign(0) tolerated(0.39) neutral(0.016) HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain LUZP1 7798 genome.wustl.edu 37 1 23417942 23417943 + Frame_Shift_Ins INS - - T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142546.1 -1 reviewed p.T938fs 0.001:0.000 - - - - - - - - - NULL LUZP1 7798 genome.wustl.edu 37 1 23418835 23418835 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142546.1 -1 reviewed p.P640 0.827 52 0% 91 40.7% 1 100% - - - NULL HTR1D 3352 genome.wustl.edu 37 1 23520303 23520303 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000864.4 -1 validated p.Y137S 1.000 55 0% 103 46.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 RHCE 6006 genome.wustl.edu 37 1 25729104 25729104 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020485.3 -1 reviewed p.I157V 0.000 115 0% 227 46.3% 0 - benign(0.202) tolerated(0.56) neutral(0.026) HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909) EXTL1 2134 genome.wustl.edu 37 1 26355719 26355719 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004455.2 +1 reviewed p.F272S 1.000 13 0% 33 51.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Exostosin ZNF683 257101 genome.wustl.edu 37 1 26688356 26688356 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001114759.1 -1 validated p.G434V 0.000 47 0% 60 48.3% 17 0% possibly_damaging(0.616) deleterious(0.04) deleterious(0.564) NULL ARID1A 8289 genome.wustl.edu 37 1 27088666 27088666 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006015.4 +1 reviewed p.M759V 1.000 38 0% 66 40.9% 0 - benign(0.01) tolerated(0.07) neutral(0.320) NULL ARID1A 8289 genome.wustl.edu 37 1 27105564 27105564 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006015.4 +1 reviewed p.I1725 0.995 57 0% 124 42.7% 8 37.5% - - - NULL SLC9A1 6548 genome.wustl.edu 37 1 27429171 27429171 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003047.3 -1 validated p.K547E 1.000 17 0% 55 40% 4 50% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL COL16A1 1307 genome.wustl.edu 37 1 32167723 32167723 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001856.3 -1 reviewed p.T24 1.000 36 0% 99 45.5% 0 - - - - NULL CSMD2 114784 genome.wustl.edu 37 1 34190132 34190132 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052896.3 -1 validated p.L917 1.000 16 0% 27 48.1% 0 - - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain KIAA0319L 79932 genome.wustl.edu 37 1 35915518 35915518 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024874.4 -1 reviewed p.D768G 1.000 79 0% 56 44.6% 4 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00089,superfamily_PKD domain CLSPN 63967 genome.wustl.edu 37 1 36202541 36202541 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022111.2 -1 reviewed p.A1295T 0.859 44 0% 65 35.4% 0 - possibly_damaging(0.774) tolerated(0.59) neutral(0.293) NULL EIF2C4 192670 genome.wustl.edu 37 1 36282617 36282617 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017629.2 +1 reviewed p.K52E 1.000 88 0% 103 30.1% 0 - benign(0.004) tolerated(0.09) neutral(0.296) superfamily_PAZ domain RRAGC 64121 genome.wustl.edu 37 1 39318152 39318152 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022157.2 -1 provisional p.L217R 1.000 133 0% 132 48.5% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Gtr1_RagA,superfamily_SSF52540 MACF1 23499 genome.wustl.edu 37 1 39800067 39800067 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033044.2 +1 reviewed p.L1043M 0.008 67 0% 53 39.6% 0 - possibly_damaging(0.437) - - HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399 MACF1 23499 genome.wustl.edu 37 1 39851548 39851548 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033044.2 +1 reviewed p.K3204R 1.000 28 0% 49 26.5% 1 0% benign(0.001) tolerated(0.29) neutral(0.029) HMMSmart_SPEC,superfamily_Spectrin CAP1 10487 genome.wustl.edu 37 1 40530026 40530026 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001105530.1 +1 reviewed p.L141R 1.000 100 0% 79 46.8% 13 7.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP RLF 6018 genome.wustl.edu 37 1 40701779 40701779 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012421.3 +1 validated p.F469V 1.000 63 0% 28 35.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL RLF 6018 genome.wustl.edu 37 1 40703623 40703623 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012421.3 +1 validated p.G1083 0.999 83 0% 67 47.8% 2 0% - - - NULL SCMH1 22955 genome.wustl.edu 37 1 41493882 41493882 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001031694.2 -1 validated p.K656R 1.000 5 0.000 37 0.378 70 54.2% possibly_damaging(0.647) tolerated(0.07) deleterious(0.546) HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain FOXJ3 22887 genome.wustl.edu 37 1 42647691 42647692 + Frame_Shift_Ins INS - - T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014947.3 -1 validated p.N550fs 0.996:1.000 - - - - - - - - - NULL CCDC30 728621 genome.wustl.edu 37 1 43042837 43042837 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080850.2 +1 validated p.S334 0.991 110 0% 45 42.2% 0 - - - - NULL TIE1 7075 genome.wustl.edu 37 1 43773174 43773174 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005424.2 +1 provisional p.T282A 1.000 12 0% 46 47.8% 0 - benign(0.021) tolerated(0.15) neutral(0.242) NULL PTPRF 5792 genome.wustl.edu 37 1 44054579 44054579 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002840.3 +1 reviewed p.E286G 1.000 20 0% 94 46.8% 4 25% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin MAST2 23139 genome.wustl.edu 37 1 46348057 46348057 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015112.2 +1 validated p.R164 1.000 205 0% 124 41.1% 3 33.3% - - - NULL POMGNT1 55624 genome.wustl.edu 37 1 46655562 46655562 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017739.3 -1 reviewed p.K583 0.930 29 0% 96 43.8% 58 60.3% - - - superfamily_Nucleotide-diphospho-sugar transferases DMBX1 127343 genome.wustl.edu 37 1 46976311 46976311 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_147192.2 +1 reviewed p.P111 0.982 14 0% 45 57.8% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1 CYP4X1 260293 genome.wustl.edu 37 1 47498948 47498948 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178033.1 +1 reviewed p.F134V 1.000 69 0% 58 31% 0 - benign(0.184) tolerated(0.09) neutral(0.314) HMMPfam_p450,superfamily_Cytochrome P450 BEND5 79656 genome.wustl.edu 37 1 49201967 49201967 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024603.2 -1 validated p.K351R 1.000 130 0% 98 45.9% 16 50% benign(0.094) tolerated(0.78) neutral(0.008) HMMPfam_BEN AGBL4 84871 genome.wustl.edu 37 1 50162986 50162986 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032785.3 -1 validated p.Q94R 1.000 116 0% 67 37.3% 0 - probably_damaging(0.978) deleterious(0) deleterious(0.865) NULL ZFYVE9 9372 genome.wustl.edu 37 1 52698922 52698922 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004799.2 +1 reviewed p.V15A 1.000 217 0% 126 27.8% 2 50% benign(0.418) deleterious(0) deleterious(0.580) NULL ZCCHC11 23318 genome.wustl.edu 37 1 52889651 52889651 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001009881.1 -1 validated p.R1632G 1.000 44 0% 48 43.8% 34 35.2% possibly_damaging(0.833) deleterious(0) deleterious(0.762) NULL ZCCHC11 23318 genome.wustl.edu 37 1 52891081 52891081 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001009881.1 -1 validated p.Q1604K 1.000 73 0% 81 38.3% 27 29.6% benign(0.205) deleterious(0) neutral(0.465) NULL ZCCHC11 23318 genome.wustl.edu 37 1 52924016 52924016 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001009881.1 -1 validated p.L1143I 1.000 57 0% 58 46.6% 4 25% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) superfamily_PAP/OAS1 substrate-binding domain GPX7 2882 genome.wustl.edu 37 1 53072423 53072423 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015696.4 +1 validated p.Q69R 1.000 19 0% 67 46.3% 11 27.2% benign(0.125) tolerated(0.14) neutral(0.260) HMMPfam_GSHPx,superfamily_Thiordxn-like_fd CPT2 1376 genome.wustl.edu 37 1 53676885 53676885 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000098.2 +1 reviewed p.S513 0.002 16 0% 35 42.9% 8 37.5% - - - HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases PARS2 25973 genome.wustl.edu 37 1 55223427 55223427 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152268.3 -1 validated p.T470A 0.658 17 0% 51 37.3% 1 100% benign(0.012) tolerated(0.8) neutral(0.001) superfamily_Anticodon-binding domain of Class II aaRS C1orf168 199920 genome.wustl.edu 37 1 57207872 57207872 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004303.4 -1 validated p.E522 0.999 237 0% 108 35.2% 1 100% - - - NULL C8A 731 genome.wustl.edu 37 1 57351757 57351757 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000562.2 +1 reviewed p.G338D 1.000 70 0% 36 47.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN INADL 10207 genome.wustl.edu 37 1 62232117 62232117 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_176877.2 +1 reviewed p.F119S 0.990 156 0.6% 106 56.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_PDZ domain-like JAK1 3716 genome.wustl.edu 37 1 65316557 65316557 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002227.2 -1 reviewed p.Q562R 1.000 21 0% 62 33.9% 3 33.3% benign(0) tolerated(0.53) neutral(0.007) superfamily_SSF55550 SGIP1 84251 genome.wustl.edu 37 1 67108512 67108512 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032291.2 +1 validated p.E83G 1.000 55 0% 44 38.6% 1 0% probably_damaging(0.967) deleterious(0) deleterious(0.853) NULL LRRC7 57554 genome.wustl.edu 37 1 70573494 70573494 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020794.2 +1 validated p.G1497 0.941 82 0% 86 45.3% 0 - - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like HHLA3 11147 genome.wustl.edu 37 1 70833370 70833370 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001031693.2 +1 validated p.S109T 0.517 126 0% 74 54.1% 137 62% unknown(0) - - NULL ZRANB2 9406 genome.wustl.edu 37 1 71544238 71544238 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_203350.1 -1 validated p.T40 1.000 127 0% 80 51.2% 6 50% - - - HMMPfam_zf-RanBP,superfamily_Znf265 first zinc-finger domain TYW3 127253 genome.wustl.edu 37 1 75202288 75202288 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138467.2 +1 validated p.L79 0.971 90 0% 120 40% 4 25% - - - HMMPfam_TYW3,superfamily_DUF207 ZZZ3 26009 genome.wustl.edu 37 1 78050242 78050242 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015534.4 -1 provisional p.L535P 1.000 187 0% 172 43.6% 3 66.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL FAM73A 374986 genome.wustl.edu 37 1 78332067 78332067 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198549.2 +1 predicted p.Q518 0.455 131 0% 236 45.8% 1 100% - - - HMMPfam_DUF2217 CLCA2 9635 genome.wustl.edu 37 1 86921185 86921185 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006536.5 +1 reviewed p.K936R 0.001 84 0% 73 49.3% 0 - benign(0.004) deleterious(0) neutral(0.445) NULL CCBL2 56267 genome.wustl.edu 37 1 89427824 89427824 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000260508 -1 known p.I153T 1.000 99 0% 56 50% 2 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases LOC100288649 100288649 genome.wustl.edu 37 1 89525904 89525904 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002342055.1 +1 model p.G93S 0.741 42 0% 49 30.6% 3 0% - - - NULL GBP7 388646 genome.wustl.edu 37 1 89613446 89613446 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207398.2 -1 validated p.K390R 0.002 118 0% 53 37.7% 0 - benign(0.01) tolerated(0.09) neutral(0.297) HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain GBP5 115362 genome.wustl.edu 37 1 89732273 89732273 + Splice_Site SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001134486.1 -1 validated e5-2 0.902 91 0% 105 45.7% 0 - - - - - GBP5 115362 genome.wustl.edu 37 1 89732835 89732835 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001134486.1 -1 validated p.N144D 0.999 35 0% 70 48.6% 1 0% benign(0.001) tolerated(0.05) neutral(0.345) HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases KIAA1107 23285 genome.wustl.edu 37 1 92649686 92649686 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015237.2 +1 validated p.Q1288H 1.000 61 0% 61 37.7% 5 60% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL CCDC18 343099 genome.wustl.edu 37 1 93667511 93667511 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_206886.2 +1 validated p.Q372P 0.997 110 0% 99 45.5% 0 - benign(0.314) tolerated(0.25) neutral(0.135) NULL ABCD3 5825 genome.wustl.edu 37 1 94955469 94955469 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002858.3 +1 reviewed p.G420 0.160 162 0.6% 83 42.2% 2 0% - - - NULL RWDD3 25950 genome.wustl.edu 37 1 95712133 95712133 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000429514 +1 known p.C173R 1.000 246 0% 155 44.5% 15 40% - - - NULL DPYD 1806 genome.wustl.edu 37 1 98144657 98144657 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000110.3 -1 reviewed p.G282* 1.000 65 0% 49 36.7% 0 - - - - HMMPfam_Pyr_redox_2,superfamily_SSF51971 HIAT1 64645 genome.wustl.edu 37 1 100527433 100527433 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000421661 +1 known p.D77Y 1.000 538 0% 324 37.7% 2 50% - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter LOC126987 126987 genome.wustl.edu 37 1 106623385 106623385 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002342097.1 -1 model p.T225I 0.511 4 0.000 24 0.542 0 - - - - NULL SLC25A24 29957 genome.wustl.edu 37 1 108690937 108690937 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013386.3 -1 validated p.A298 0.855 232 0% 140 46.4% 0 - - - - superfamily_Mitochondrial carrier,HMMPfam_Mito_carr PRPF38B 55119 genome.wustl.edu 37 1 109241906 109241906 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018061.2 +1 validated p.Q302R 1.000 21 0% 42 50% 28 46.4% unknown(0) tolerated(0.2) - NULL AKNAD1 254268 genome.wustl.edu 37 1 109366021 109366021 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152763.3 -1 validated p.S713Y 0.009 219 0% 256 42.2% 0 - benign(0) tolerated(0.92) - NULL WDR47 22911 genome.wustl.edu 37 1 109553951 109553951 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142550.1 -1 validated p.D246E 0.997 105 0% 91 48.4% 0 - benign(0.009) tolerated(0.17) neutral(0.059) NULL KIAA1324 57535 genome.wustl.edu 37 1 109727754 109727754 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020775.3 +1 validated p.E347G 1.000 12 0% 45 60% 13 7.6% probably_damaging(0.969) tolerated(0.12) deleterious(0.672) superfamily_Growth factor receptor domain SARS 6301 genome.wustl.edu 37 1 109778706 109778706 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006513.2 +1 reviewed p.Y359* 1.000 36 0% 49 34.7% 26 23% - - - HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases CYB561D1 284613 genome.wustl.edu 37 1 110038621 110038621 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001134400.1 +1 validated p.C166R 1.000 22 0% 81 39.5% 1 100% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_Cytochrom_B561,HMMSmart_B561 AMPD2 271 genome.wustl.edu 37 1 110170130 110170130 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004037.6 +1 validated p.N368D 1.000 47 0% 275 44.4% 10 20% benign(0.005) tolerated(1) - NULL CD53 963 genome.wustl.edu 37 1 111435117 111435118 + Frame_Shift_Ins INS - - T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000560.3 +1 reviewed p.M72fs 1.000:1.000 - - - - - - - - - HMMPfam_Tetraspannin,PatternScan_TM4_1 DRAM2 128338 genome.wustl.edu 37 1 111667415 111667415 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178454.4 -1 validated p.L96 1.000 85 0% 70 54.3% 11 72.7% - - - HMMPfam_Frag1 DENND2D 79961 genome.wustl.edu 37 1 111731340 111731340 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024901.3 -1 provisional p.G361 0.011 53 0% 64 48.4% 17 41.1% - - - NULL LOC100287536 100287536 genome.wustl.edu 37 1 111983882 111983882 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002342100.1 +1 model p.W76R 0.467 45 0% 96 39.6% 75 46.6% - - - NULL MOV10 4343 genome.wustl.edu 37 1 113234384 113234384 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130079.1 +1 validated p.S312R 0.692 23 0% 61 57.4% 8 25% benign(0.002) tolerated(0.14) neutral(0.249) NULL MAGI3 260425 genome.wustl.edu 37 1 114184795 114184795 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142782.1 +1 validated p.N541K 1.000 72 1.4% 72 38.9% 0 - benign(0.122) tolerated(0.89) neutral(0.010) NULL NRAS 4893 genome.wustl.edu 37 1 115256529 115256529 + Missense_Mutation SNP T T C rs11554290 byCluster TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002524.3 -1 reviewed p.Q61R 1.000 75 0% 178 40.4% 2 50% benign(0.004) deleterious(0.01) neutral(0.406) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases IGSF3 3321 genome.wustl.edu 37 1 117122362 117122362 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001542.2 -1 validated p.K1016E 0.997 6 0.000 25 0.280 2 0% benign(0.01) tolerated(1) neutral(0.001) HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726 WARS2 10352 genome.wustl.edu 37 1 119575710 119575710 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015836.3 -1 reviewed p.K303E 1.000 45 0% 126 34.1% 23 39.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase PDE4DIP 9659 genome.wustl.edu 37 1 144854571 144854571 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014644.4 -1 validated p.L2300R 0.984 196 0% 193 20.2% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ITGA10 8515 genome.wustl.edu 37 1 145539391 145539391 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003637.3 +1 reviewed p.T1020 0.000 35 0% 73 54.8% 6 33.3% - - - HMMPfam_Integrin_alpha2,superfamily_Integrin domains GPR89A 653519 genome.wustl.edu 37 1 145804268 145804268 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001097612.1 -1 validated p.Y171 1.000 280 0% 375 15.5% 0 - - - - NULL SETDB1 9869 genome.wustl.edu 37 1 150923195 150923195 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145415.1 +1 reviewed p.R614 0.481 56 0% 80 35% 3 66.6% - - - HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain POGZ 23126 genome.wustl.edu 37 1 151384210 151384210 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015100.2 -1 reviewed p.D606G 0.996 23 0% 63 50.8% 6 66.6% probably_damaging(0.978) tolerated(0.33) neutral(0.445) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CGN 57530 genome.wustl.edu 37 1 151503053 151503053 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020770.2 +1 validated p.R801L 0.447 9 0.000 18 0.444 2 50% possibly_damaging(0.938) deleterious(0.02) deleterious(0.766) NULL S100A10 6281 genome.wustl.edu 37 1 151955722 151955722 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002966.2 -1 reviewed p.S71G 1.000 110 0% 162 45.1% 443 44.6% benign(0) deleterious(0) neutral(0.445) PatternScan_S100_CABP,superfamily_EF-hand TCHHL1 126637 genome.wustl.edu 37 1 152059684 152059684 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001008536.1 -1 provisional p.D158 0.001 177 0% 219 37.4% 0 - - - - NULL FLG 2312 genome.wustl.edu 37 1 152276158 152276158 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002016.1 -1 reviewed p.Q3735R 0.002 74 0% 146 40.4% 0 - benign(0.34) tolerated(0.43) neutral(0.121) NULL SPRR2E 6704 genome.wustl.edu 37 1 153066134 153066134 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001024209.2 -1 validated p.C32R 0.987 101 0% 130 47.7% 1 0% unknown(0) - - NULL ILF2 3608 genome.wustl.edu 37 1 153638139 153638139 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004515.2 -1 reviewed p.V154F 1.000 81 0% 145 48.3% 33 45.4% probably_damaging(0.956) tolerated(0.12) deleterious(0.660) HMMPfam_DZF,HMMSmart_SM00572,superfamily_Nucleotidyltransferase DENND4B 9909 genome.wustl.edu 37 1 153914441 153914441 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014856.2 -1 validated p.V320A 1.000 13 0% 35 54.3% 12 75% possibly_damaging(0.577) deleterious(0) deleterious(0.643) HMMPfam_DENN,HMMSmart_DENN NUP210L 91181 genome.wustl.edu 37 1 154091262 154091262 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207308.2 -1 validated p.K450T 0.001 223 0% 167 48.5% 0 - benign(0) tolerated(0.5) neutral(0.010) superfamily_Invasin_intimin ENSG00000246604 0 genome.wustl.edu 37 1 154184768 154184768 + RNA SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000502106 +1 novel NULL 0.000 21 0% 57 40.4% 20 65% - - - - ASH1L 55870 genome.wustl.edu 37 1 155340697 155340697 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018489.2 -1 reviewed p.E2137G 1.000 104 0% 172 41.9% 2 50% probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_SET,HMMSmart_SM00570,superfamily_SET domain ASH1L 55870 genome.wustl.edu 37 1 155448178 155448178 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018489.2 -1 reviewed p.S1495P 1.000 116 0% 110 47.3% 1 100% possibly_damaging(0.836) deleterious(0.03) deleterious(0.684) NULL ASH1L 55870 genome.wustl.edu 37 1 155451536 155451536 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018489.2 -1 reviewed p.K375N 0.618 139 0% 94 39.4% 1 100% possibly_damaging(0.917) deleterious(0) deleterious(0.812) NULL SMG5 23381 genome.wustl.edu 37 1 156228872 156228872 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015327.2 -1 validated p.E789G 1.000 6 0.000 27 0.333 17 52.9% possibly_damaging(0.818) tolerated(0.16) neutral(0.368) NULL ARHGEF11 9826 genome.wustl.edu 37 1 156908253 156908253 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198236.1 -1 reviewed p.S1383 0.997 43 0% 69 59.4% 5 40% - - - NULL OR10R2 343406 genome.wustl.edu 37 1 158450506 158450506 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004472.1 +1 provisional p.L280R 0.997 115 0% 77 48.1% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_7tm_1,superfamily_SSF81321 SPTA1 6708 genome.wustl.edu 37 1 158589074 158589074 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003126.2 -1 reviewed p.F2156 1.000 145 0% 127 39.4% 0 - - - - superfamily_Spectrin repeat OR6K3 391114 genome.wustl.edu 37 1 158687692 158687692 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005327.2 -1 validated p.W88R 0.025 49 0% 62 40.3% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_7tm_1,superfamily_SSF81321 CCDC19 25790 genome.wustl.edu 37 1 159863068 159863068 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012337.2 -1 validated p.S11P 0.995 37 0% 80 38.8% 1 0% benign(0.396) deleterious(0.04) deleterious(0.476) NULL PEX19 5824 genome.wustl.edu 37 1 160249982 160249982 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002857.3 -1 reviewed p.K217Q 1.000 54 0% 93 47.3% 5 60% probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_Pex19 COPA 1314 genome.wustl.edu 37 1 160265890 160265890 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098398.1 -1 reviewed p.A780 0.993 173 0% 146 37.7% 15 33.3% - - - HMMPfam_Coatomer_WDAD CD244 51744 genome.wustl.edu 37 1 160811258 160811258 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016382.3 -1 reviewed p.R133C 0.000 35 0% 48 37.5% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL F11R 50848 genome.wustl.edu 37 1 160969739 160969739 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016946.4 -1 reviewed p.T207 0.008 24 0% 67 38.8% 10 40% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin NDUFS2 4720 genome.wustl.edu 37 1 161179710 161179710 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004550.4 +1 reviewed p.G231R 1.000 26 0% 65 38.5% 19 31.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Complex1_49kDa,superfamily_SSF56762 HSPA6 3310 genome.wustl.edu 37 1 161496060 161496060 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002155.3 +1 validated p.V538M 0.874 45 0% 133 41.4% 12 0% possibly_damaging(0.828) deleterious(0.01) deleterious(0.720) HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain OLFML2B 25903 genome.wustl.edu 37 1 161993166 161993166 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015441.1 -1 provisional p.W19R 0.414 27 0% 100 37% 0 - possibly_damaging(0.92) deleterious(0) deleterious(0.816) NULL NUF2 83540 genome.wustl.edu 37 1 163325243 163325243 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031423.3 +1 reviewed p.F460S 0.120 159 0% 83 51.8% 6 50% benign(0.071) tolerated(0.11) neutral(0.277) NULL ALDH9A1 223 genome.wustl.edu 37 1 165632326 165632326 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000696.3 -1 reviewed p.T506 0.001 95 0% 107 27.1% 37 18.9% - - - HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH POU2F1 5451 genome.wustl.edu 37 1 167365649 167365649 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002697.2 +1 provisional p.W349R 1.000 99 0% 123 53.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains DCAF6 55827 genome.wustl.edu 37 1 168035689 168035689 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018442.2 +1 validated p.K820E 1.000 81 0% 71 33.8% 35 51.4% possibly_damaging(0.797) tolerated(0.46) neutral(0.311) superfamily_WD40_like C1orf112 55732 genome.wustl.edu 37 1 169799838 169799838 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018186.2 +1 predicted p.Y467D 0.735 331 0% 123 48.8% 2 50% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) NULL PRRC2C 23215 genome.wustl.edu 37 1 171509373 171509373 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015172.3 +1 validated p.R921Q 0.722 63 0% 61 44.3% 1 0% probably_damaging(0.995) tolerated(0.36) deleterious(0.478) NULL SLC9A11 284525 genome.wustl.edu 37 1 173474404 173474404 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178527.3 -1 validated p.S1098R 0.000 222 0% 109 37.6% 0 - benign(0.001) tolerated(0.27) neutral(0.034) NULL SERPINC1 462 genome.wustl.edu 37 1 173873033 173873033 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000488.3 -1 reviewed p.V463 0.000 129 0% 73 38.4% 0 - - - - superfamily_Prot_inh_serpin RC3H1 149041 genome.wustl.edu 37 1 173921239 173921239 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_172071.2 -1 validated p.K803R 1.000 168 0% 161 39.1% 1 0% possibly_damaging(0.679) tolerated(0.72) neutral(0.243) NULL RABGAP1L 9910 genome.wustl.edu 37 1 174247839 174247839 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014857.3 +1 validated p.R415 0.992 104 0% 148 25% 1 0% - - - NULL TNR 7143 genome.wustl.edu 37 1 175375649 175375649 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003285.2 -1 validated p.V68L 1.000 64 0% 150 14.7% 0 - benign(0.138) tolerated(0.07) neutral(0.331) NULL PAPPA2 60676 genome.wustl.edu 37 1 176564104 176564104 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020318.2 +1 validated p.V455A 0.002 26 0% 73 45.2% 0 - benign(0.002) tolerated(0.23) neutral(0.042) NULL PAPPA2 60676 genome.wustl.edu 37 1 176708891 176708891 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020318.2 +1 validated p.S1310P 1.000 35 0% 37 43.2% 0 - benign(0.001) tolerated(0.14) neutral(0.249) NULL PAPPA2 60676 genome.wustl.edu 37 1 176738760 176738760 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020318.2 +1 validated p.T1447 0.003 144 0% 76 43.4% 0 - - - - HMMSmart_SM00032,superfamily_Complement control module/SCR domain TOR1AIP2 163590 genome.wustl.edu 37 1 179815518 179815518 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145034.3 -1 validated p.F367 0.969 78 0% 103 48.5% 1 100% - - - HMMPfam_LAP1C RGSL1 353299 genome.wustl.edu 37 1 182443440 182443440 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001137669.1 +1 validated p.Q398 0.074 71 0% 49 46.9% 0 - - - - superfamily_Regulator of G-protein signaling RGS DHX9 1660 genome.wustl.edu 37 1 182828234 182828234 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001357.4 +1 reviewed p.Q374 0.978 117 0% 86 43% 5 60% - - - NULL LAMC1 3915 genome.wustl.edu 37 1 183087278 183087278 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002293.3 +1 reviewed p.R663G 1.000 125 0% 127 23.6% 0 - benign(0.052) tolerated(0.15) neutral(0.244) HMMPfam_Laminin_B,superfamily_Grow_fac_recept,HMMSmart_LamB LAMC1 3915 genome.wustl.edu 37 1 183099621 183099621 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002293.3 +1 reviewed p.T1141 1.000 54 0% 67 46.3% 2 0% - - - NULL HMCN1 83872 genome.wustl.edu 37 1 186140524 186140524 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031935.2 +1 reviewed p.I5210M 0.993 89 0% 85 40% 0 - benign(0.323) tolerated(0.19) neutral(0.151) PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin PLA2G4A 5321 genome.wustl.edu 37 1 186957617 186957617 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024420.2 +1 reviewed p.F743L 0.980 177 0% 79 45.6% 71 43.6% benign(0) deleterious(0.04) neutral(0.349) NULL CDC73 79577 genome.wustl.edu 37 1 193094329 193094329 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024529.4 +1 reviewed p.V73 0.680 162 0% 310 38.4% 5 20% - - - NULL KCNT2 343450 genome.wustl.edu 37 1 196288638 196288638 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198503.2 -1 validated p.Y775C 1.000 108 0% 31 48.4% 0 - probably_damaging(0.985) deleterious(0) deleterious(0.877) NULL CFHR2 3080 genome.wustl.edu 37 1 196928111 196928111 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005666.2 +1 validated p.E238 0.455 118 0.8% 60 51.7% 0 - - - - HMMSmart_SM00032,superfamily_Complement control module/SCR domain ASPM 259266 genome.wustl.edu 37 1 197070193 197070193 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018136.4 -1 reviewed p.T2730P 0.000 48 0% 19 36.8% 0 - benign(0.064) tolerated(0.15) neutral(0.245) superfamily_P-loop containing nucleoside triphosphate hydrolases ZBTB41 360023 genome.wustl.edu 37 1 197128703 197128703 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_194314.2 -1 validated p.L839R 0.297 226 0% 212 40.6% 3 0% probably_damaging(0.986) deleterious(0) deleterious(0.879) NULL FAM58BP 339521 genome.wustl.edu 37 1 200182862 200182862 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001105517.1 +1 provisional p.T57 0.997 69 0% 188 46.8% 0 - - - - HMMSmart_CYCLIN,superfamily_Cyclin_like KIF14 9928 genome.wustl.edu 37 1 200550398 200550398 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014875.2 -1 validated p.K1089R 1.000 113 0% 131 41.2% 0 - possibly_damaging(0.931) tolerated(0.15) deleterious(0.619) NULL CAMSAP2 23271 genome.wustl.edu 37 1 200811148 200811148 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_203459.1 +1 validated p.E318D 0.988 398 0% 293 46.4% 2 0% possibly_damaging(0.931) deleterious(0) deleterious(0.822) superfamily_Calponin-homology domain CH-domain PKP1 5317 genome.wustl.edu 37 1 201282366 201282366 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000299.2 +1 reviewed p.S127G 0.361 12 0% 14 35.7% 0 - benign(0) tolerated(0.53) neutral(0.007) NULL MFSD4 148808 genome.wustl.edu 37 1 205553189 205553189 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181644.4 +1 validated p.E266G 1.000 20 0% 85 43.5% 1 100% possibly_damaging(0.478) deleterious(0.02) deleterious(0.541) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter C1orf186 440712 genome.wustl.edu 37 1 206239520 206239520 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000331555 -1 known p.N126 0.000 118 0.8% 130 40% 68 60.2% - - - NULL IL24 11009 genome.wustl.edu 37 1 207075402 207075402 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000480741 +1 known p.G56E 0.005 45 0% 114 45.6% 0 - unknown(0) - - NULL CR1L 1379 genome.wustl.edu 37 1 207850821 207850821 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_175710.1 +1 validated p.N62T 0.001 120 0% 178 42.7% 1 0% benign(0.101) tolerated(0.14) neutral(0.257) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain INTS7 25896 genome.wustl.edu 37 1 212120019 212120019 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015434.2 -1 provisional p.I782T 1.000 154 0% 105 47.6% 2 50% possibly_damaging(0.918) tolerated(0.42) neutral(0.383) NULL TMEM206 55248 genome.wustl.edu 37 1 212538612 212538612 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018252.2 -1 validated p.K333R 1.000 298 0% 206 36.4% 7 28.5% probably_damaging(0.991) tolerated(0.32) neutral(0.468) NULL C1orf227 149643 genome.wustl.edu 37 1 213009355 213009355 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001024601.2 -1 predicted p.V46A 0.183 129 0% 81 63% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL RPS6KC1 26750 genome.wustl.edu 37 1 213415093 213415094 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012424.3 +1 validated p.S759fs 0.000:0.000 - - - - - - - - - NULL PROX1 5629 genome.wustl.edu 37 1 214171568 214171568 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002763.3 +1 provisional p.D564Y 1.000 37 0% 67 50.7% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Prox1 CENPF 1063 genome.wustl.edu 37 1 214795546 214795546 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016343.3 +1 reviewed p.I330 0.002 211 0% 109 38.5% 0 - - - - NULL USH2A 7399 genome.wustl.edu 37 1 216074101 216074101 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_206933.2 -1 reviewed p.L2483I 0.168 46 0% 46 41.3% 0 - benign(0.089) deleterious(0.05) neutral(0.352) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III USH2A 7399 genome.wustl.edu 37 1 216595196 216595196 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_206933.2 -1 reviewed p.V161 1.000 55 0% 57 40.4% 0 - - - - HMMSmart_SM00560,superfamily_Concanavalin A-like lectins/glucanases LYPLAL1 127018 genome.wustl.edu 37 1 219366581 219366581 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138794.3 +1 validated p.R117 1.000 124 0% 54 27.8% 1 0% - - - HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases BROX 148362 genome.wustl.edu 37 1 222903388 222903388 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144695.2 +1 validated p.A286 0.965 65 0% 75 38.7% 1 0% - - - HMMPfam_BRO1 DNAH14 127602 genome.wustl.edu 37 1 225230779 225230779 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001373.1 +1 validated p.S577 0.003 113 0% 57 36.8% 0 - - - - NULL C1orf55 163859 genome.wustl.edu 37 1 226180701 226180701 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152608.3 -1 validated p.F81V 1.000 37 0% 63 44.4% 1 100% possibly_damaging(0.919) deleterious(0) deleterious(0.814) NULL LOC391169 391169 genome.wustl.edu 37 1 226681097 226681097 + RNA SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XR_039983.2 -1 model NULL 0.019 39 0% 34 41.2% 0 - - - - - PSEN2 5664 genome.wustl.edu 37 1 227076664 227076664 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000447.2 +1 reviewed p.M234T 1.000 32 0% 127 47.2% 9 77.7% benign(0.008) tolerated(0.29) neutral(0.029) HMMPfam_Presenilin,HMMSmart_SM00730 CDC42BPA 8476 genome.wustl.edu 37 1 227288818 227288818 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003607.3 -1 reviewed p.E708D 1.000 247 0% 106 50.9% 0 - benign(0.002) tolerated(0.12) neutral(0.261) NULL WNT9A 7483 genome.wustl.edu 37 1 228113071 228113071 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003395.2 -1 validated p.L82P 1.000 4 0.000 11 0.455 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_wnt,HMMSmart_WNT1 OBSCN 84033 genome.wustl.edu 37 1 228461571 228461571 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098623.1 +1 reviewed p.S1746 0.000 13 0% 46 52.2% 0 - - - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin C1orf96 126731 genome.wustl.edu 37 1 229462599 229462599 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145257.3 -1 validated p.S174 0.039 412 0.2% 360 43.1% 1 0% - - - NULL NUP133 55746 genome.wustl.edu 37 1 229641811 229641811 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018230.2 -1 reviewed p.M93V 1.000 78 0% 103 39.8% 1 100% benign(0.006) tolerated(0.92) - HMMPfam_Nup133_N DISC1 27185 genome.wustl.edu 37 1 232162285 232162285 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018662.2 +1 reviewed p.D804 1.000 67 0% 41 51.2% 2 50% - - - NULL PCNXL2 80003 genome.wustl.edu 37 1 233388205 233388205 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014801.3 -1 provisional p.T675A 0.996 106 0% 99 15.2% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL HEATR1 55127 genome.wustl.edu 37 1 236735757 236735757 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018072.4 -1 validated p.R1221G 0.994 213 0% 204 37.7% 2 0% benign(0.023) tolerated(0.33) neutral(0.025) superfamily_ARM-type_fold MTR 4548 genome.wustl.edu 37 1 237013715 237013715 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000254.2 +1 reviewed p.F529 1.000 110 0% 96 56.2% 3 66.6% - - - HMMPfam_Pterin_bind,superfamily_Dihydropteroate synthetase-like MTR 4548 genome.wustl.edu 37 1 237060869 237060869 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000254.2 +1 reviewed p.Y1241 1.000 341 0% 630 42.2% 2 50% - - - superfamily_Methionine synthase activation domain-like RYR2 6262 genome.wustl.edu 37 1 237693784 237693784 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001035.2 +1 reviewed p.K960 0.990 180 0% 165 42.4% 0 - - - - NULL RYR2 6262 genome.wustl.edu 37 1 237886435 237886435 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001035.2 +1 reviewed p.D3521G 1.000 221 0% 191 45% 0 - possibly_damaging(0.895) - - NULL RYR2 6262 genome.wustl.edu 37 1 237947794 237947794 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001035.2 +1 reviewed p.L4261P 0.213 45 0% 71 43.7% 0 - benign(0.267) - - NULL FMN2 56776 genome.wustl.edu 37 1 240370260 240370260 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020066.4 +1 validated p.T716 0.000 34 0% 76 46.1% 0 - - - - NULL WDR64 128025 genome.wustl.edu 37 1 241842790 241842790 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000366552 +1 known p.T163A 0.998 56 0% 56 48.2% 0 - probably_damaging(0.987) tolerated(0.56) neutral(0.443) HMMSmart_SM00320,superfamily_WD40 repeat-like WDR64 128025 genome.wustl.edu 37 1 241951197 241951197 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144625.4 +1 validated p.R461* 1.000 182 0.5% 188 42.6% 0 - - - - NULL SDCCAG8 10806 genome.wustl.edu 37 1 243504345 243504345 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006642.2 +1 validated p.L409S 0.839 204 0% 153 36.6% 7 42.8% benign(0.027) tolerated(0.81) neutral(0.002) NULL ADSS 159 genome.wustl.edu 37 1 244586155 244586155 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001126.2 -1 reviewed p.G215 0.794 495 0% 150 38.7% 2 50% - - - HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases AHCTF1 25909 genome.wustl.edu 37 1 247016560 247016560 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015446.4 -1 validated p.T1466A 0.000 91 0% 65 24.6% 2 50% benign(0) tolerated(0.28) neutral(0.032) NULL OR2T11 127077 genome.wustl.edu 37 1 248790015 248790015 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001001964.1 -1 provisional p.L139I 0.004 13 0% 12 58.3% 0 - benign(0.127) tolerated(0.16) neutral(0.070) HMMPfam_7tm_1,superfamily_SSF81321 TPO 7173 genome.wustl.edu 37 2 1488574 1488574 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000446278 +1 known p.P47L 0.222 9 0.000 26 0.462 0 - - - - HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases PXDN 7837 genome.wustl.edu 37 2 1643158 1643158 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012293.1 -1 validated p.Y1330C 0.852 63 0% 158 15.8% 9 33.3% probably_damaging(0.99) tolerated(0.18) deleterious(0.497) NULL MYT1L 23040 genome.wustl.edu 37 2 1947077 1947077 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015025.2 -1 validated p.R61I 1.000 114 0% 212 46.2% 0 - unknown(0) deleterious(0.01) - superfamily_SSF103637 KIDINS220 57498 genome.wustl.edu 37 2 8910800 8910800 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020738.2 -1 validated p.R1004K 1.000 83 0% 50 38% 1 0% benign(0.045) tolerated(0.63) neutral(0.006) NULL ATP6V1C2 245973 genome.wustl.edu 37 2 10918777 10918777 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001039362.1 +1 reviewed p.F348S 1.000 24 0% 170 37.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_V-ATPase_C PDIA6 10130 genome.wustl.edu 37 2 10942672 10942672 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005742.2 -1 validated p.E38D 1.000 123 0% 164 45.7% 7 57.1% benign(0.219) tolerated(0.25) neutral(0.058) superfamily_Thioredoxin-like,HMMPfam_Thioredoxin LPIN1 23175 genome.wustl.edu 37 2 11905720 11905720 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145693.1 +1 reviewed p.L18R 1.000 29 0% 138 37.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lipin_N DDX1 1653 genome.wustl.edu 37 2 15769729 15769729 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004939.1 +1 reviewed p.W627R 1.000 50 0% 46 41.3% 116 38.7% probably_damaging(0.995) deleterious(0) deleterious(0.902) superfamily_P-loop containing nucleoside triphosphate hydrolases C2orf44 80304 genome.wustl.edu 37 2 24260580 24260580 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025203.2 -1 validated p.S595 0.380 123 0% 83 54.2% 0 - - - - NULL ASXL2 55252 genome.wustl.edu 37 2 25967267 25967267 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018263.4 -1 validated p.T647A 1.000 55 0% 112 42.9% 0 - unknown(0) tolerated(0.16) - NULL TMEM214 54867 genome.wustl.edu 37 2 27262945 27262945 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017727.4 +1 validated p.V557A 0.019 23 0% 100 38% 35 37.1% benign(0.019) tolerated(0.11) neutral(0.273) HMMPfam_DUF2359 CGREF1 10669 genome.wustl.edu 37 2 27325438 27325438 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006569.5 -1 validated p.H34 0.000 11 0% 45 35.6% 0 - - - - NULL CAD 790 genome.wustl.edu 37 2 27448625 27448625 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004341.3 +1 reviewed p.F558S 1.000 33 0% 114 47.4% 0 - benign(0.223) deleterious(0) neutral(0.467) HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,superfamily_SSF56059 BRE 9577 genome.wustl.edu 37 2 28268666 28268666 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004899.3 +1 validated p.K190 1.000 83 0% 101 42.6% 8 0% - - - HMMPfam_BRE FOSL2 2355 genome.wustl.edu 37 2 28634913 28634913 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005253.3 +1 reviewed p.I193 1.000 15 0% 29 55.2% 10 50% - - - NULL FOSL2 2355 genome.wustl.edu 37 2 28635086 28635086 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005253.3 +1 reviewed p.I251S 0.995 6 0.000 19 0.316 13 38.4% probably_damaging(0.962) tolerated(0.17) neutral(0.464) NULL CLIP4 79745 genome.wustl.edu 37 2 29355022 29355022 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024692.4 +1 validated p.L93P 1.000 256 0% 128 45.3% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Ankyrin repeat BIRC6 57448 genome.wustl.edu 37 2 32696115 32696115 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016252.3 +1 reviewed p.V2172A 1.000 205 0% 234 42.7% 2 0% possibly_damaging(0.891) deleterious(0.01) deleterious(0.756) NULL BIRC6 57448 genome.wustl.edu 37 2 32724627 32724627 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016252.3 +1 reviewed p.T2828S 1.000 114 0% 126 43.7% 1 100% benign(0.001) tolerated(0.75) neutral(0.002) NULL ENSG00000181250 0 genome.wustl.edu 37 2 33952561 33952561 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000322472 -1 known p.S94 0.873 7 0.000 36 0.306 0 - - - - HMMPfam_MARVEL SULT6B1 391365 genome.wustl.edu 37 2 37406678 37406678 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001032377.1 -1 provisional p.H113R 1.000 107 0% 99 55.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases FAM82A1 151393 genome.wustl.edu 37 2 38202415 38202415 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144713.3 +1 validated p.L408I 0.679 248 0% 366 47.3% 1 0% benign(0.003) tolerated(0.43) neutral(0.013) NULL ATL2 64225 genome.wustl.edu 37 2 38570527 38570527 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000443098 -1 known p.R81K 0.969 95 0% 57 40.4% 1 100% - - - HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases SLC3A1 6519 genome.wustl.edu 37 2 44531376 44531376 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000341.3 +1 reviewed p.N411D 0.656 146 0% 78 39.7% 0 - benign(0) tolerated(0.23) neutral(0.042) HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_Glyco_hydro_cat CAMKMT 79823 genome.wustl.edu 37 2 44970822 44970822 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024766.3 +1 validated p.M229V 1.000 85 0% 49 53.1% 3 33.3% benign(0.011) deleterious(0.02) neutral(0.384) HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases NRXN1 9378 genome.wustl.edu 37 2 51254850 51254850 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001135659.1 -1 reviewed p.R188G 0.057 6 0.000 38 0.421 0 - possibly_damaging(0.816) tolerated(0.4) neutral(0.325) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 EFEMP1 2202 genome.wustl.edu 37 2 56145069 56145069 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001039348.1 -1 reviewed p.Q83R 0.985 100 0% 209 45% 0 - benign(0.315) tolerated(0.14) neutral(0.348) NULL PAPOLG 64895 genome.wustl.edu 37 2 60983615 60983615 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022894.2 +1 reviewed p.M1T 1.000 25 0% 51 39.2% 2 50% benign(0.005) deleterious(0) neutral(0.445) NULL KIAA1841 84542 genome.wustl.edu 37 2 61333717 61333717 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001129993.1 +1 validated p.C511R 0.045 164 0% 192 39.1% 1 0% benign(0.141) tolerated(0.1) neutral(0.298) NULL MDH1 4190 genome.wustl.edu 37 2 63821630 63821630 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005917.2 +1 reviewed p.P4 0.585 129 0% 128 38.3% 30 46.6% - - - superfamily_NAD(P)-binding Rossmann-fold domains AFTPH 54812 genome.wustl.edu 37 2 64779282 64779282 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_203437.2 +1 validated p.P225L 0.961 49 0% 65 46.2% 1 100% possibly_damaging(0.614) deleterious(0.04) deleterious(0.562) NULL ZNF638 27332 genome.wustl.edu 37 2 71576705 71576705 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001014972.1 +1 reviewed p.N207 1.000 122 0% 91 47.3% 1 0% - - - NULL ALMS1 7840 genome.wustl.edu 37 2 73830428 73830428 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015120.4 +1 reviewed p.K4119T 1.000 169 0% 125 43.2% 28 60.7% probably_damaging(0.959) deleterious(0.02) deleterious(0.786) NULL SLC4A5 57835 genome.wustl.edu 37 2 74452120 74452120 + Splice_Site SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000451608 -1 known e24+1 1.000 97 0% 156 48.1% 0 - benign(0.095) deleterious(0) neutral(0.452) - DNAH6 1768 genome.wustl.edu 37 2 84811162 84811162 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001370.1 +1 validated p.M757V 1.000 157 0.6% 140 10.7% 0 - benign(0.253) deleterious(0.04) neutral(0.375) NULL RNF181 51255 genome.wustl.edu 37 2 85824228 85824229 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016494.3 +1 validated p.N111fs 1.000:0.994 - - - - - - - - - HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 POLR1A 25885 genome.wustl.edu 37 2 86274358 86274358 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015425.3 -1 validated p.Q888R 0.993 42 0% 92 35.9% 2 50% benign(0.026) tolerated(0.34) neutral(0.024) HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase LOC344065 344065 genome.wustl.edu 37 2 95880404 95880404 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_292895.7 +1 model p.I224V 0.008 14 0% 16 50% 0 - - - - superfamily_C2H2 and C2HC zinc fingers NCAPH 23397 genome.wustl.edu 37 2 97019069 97019069 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015341.3 +1 reviewed p.D312E 0.969 64 0% 94 42.6% 0 - benign(0.005) tolerated(0.2) neutral(0.049) HMMPfam_Barren LOC653924 653924 genome.wustl.edu 37 2 97747748 97747748 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_001719255.2 +1 model p.T71 0.994 8 0.000 18 0.500 0 - - - - NULL ACTR1B 10120 genome.wustl.edu 37 2 98276021 98276041 + Splice_Site DEL CCTCACCTGCCCTGACCAGAA CCTCACCTGCCCTGACCAGAA - novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 CCTCACCTGCCCTGACCAGAA CCTCACCTGCCCTGACCAGAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000460427 -1 known NULL 0.001:0.024 - - - - - - - - - - VWA3B 200403 genome.wustl.edu 37 2 98928361 98928361 + Nonsense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144992.4 +1 provisional p.R1201* 0.002 12 0% 32 18.8% 2 50% - - - NULL TSGA10 80705 genome.wustl.edu 37 2 99634681 99634681 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025244.2 -1 validated p.L685P 0.876 151 0% 110 45.5% 8 62.5% probably_damaging(0.996) tolerated(0.11) deleterious(0.733) NULL TXNDC9 10190 genome.wustl.edu 37 2 99938615 99938615 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005783.3 -1 reviewed p.K122 0.991 136 0% 129 38.8% 6 33.3% - - - superfamily_Thiordxn-like_fd REV1 51455 genome.wustl.edu 37 2 100055064 100055064 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016316.2 -1 reviewed p.T404 1.000 47 0% 56 48.2% 7 71.4% - - - superfamily_DNA/RNA polymerases MAP4K4 9448 genome.wustl.edu 37 2 102452423 102452424 + Frame_Shift_Ins INS - - CT novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145686.2 +1 reviewed p.K253fs 1.000:1.000 - - - - - - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase MAP4K4 9448 genome.wustl.edu 37 2 102472450 102472450 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000421882 +1 known p.R155G 1.000 150 0% 191 40.3% 18 72.2% - - - superfamily_Protein kinase-like (PK-like) IL18R1 8809 genome.wustl.edu 37 2 103013192 103013192 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003855.2 +1 reviewed p.L491P 0.997 122 0% 112 31.2% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR IL18RAP 8807 genome.wustl.edu 37 2 103040643 103040643 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000417414 +1 known p.I148T 0.000 137 0% 90 35.6% 0 - - - - NULL NCK2 8440 genome.wustl.edu 37 2 106498188 106498188 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004720.2 +1 reviewed p.E211K 1.000 7 0.000 78 0.526 10 40% benign(0.268) tolerated(0.05) neutral(0.374) HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 RGPD3 653489 genome.wustl.edu 37 2 107041488 107041488 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001144013.1 -1 validated p.T979A 1.000 158 0.6% 85 41.2% 2 0% benign(0.005) tolerated(0.12) neutral(0.261) NULL RGPD4 285190 genome.wustl.edu 37 2 108487588 108487588 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182588.2 +1 validated p.Q1043R 1.000 95 0% 56 42.9% 0 - probably_damaging(0.979) deleterious(0.03) deleterious(0.786) HMMSmart_RanBD,superfamily_SSF50729 RANBP2 5903 genome.wustl.edu 37 2 109382906 109382906 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006267.4 +1 reviewed p.F1971L 1.000 127 0% 77 42.9% 7 42.8% possibly_damaging(0.888) - - NULL RANBP2 5903 genome.wustl.edu 37 2 109383782 109383782 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006267.4 +1 reviewed p.S2263A 1.000 339 0.3% 137 46.7% 9 44.4% probably_damaging(0.987) - - NULL SLC35F5 80255 genome.wustl.edu 37 2 114493388 114493388 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000447673 -1 known p.S16G 0.978 124 0% 65 47.7% 2 100% - - - NULL PTPN4 5775 genome.wustl.edu 37 2 120720255 120720255 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002830.2 +1 reviewed p.T782P 1.000 68 2.9% 56 14.3% 9 11.1% benign(0.279) tolerated(0.26) neutral(0.064) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 GLI2 2736 genome.wustl.edu 37 2 121712946 121712946 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005270.4 +1 reviewed p.M195V 0.978 8 0.000 26 0.346 0 - benign(0) tolerated(1) - NULL MKI67IP 84365 genome.wustl.edu 37 2 122488592 122488592 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032390.4 -1 reviewed p.K147 0.743 262 0% 250 44.4% 35 51.4% - - - NULL SAP130 79595 genome.wustl.edu 37 2 128783765 128783765 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024545.3 -1 validated p.P60 0.967 26 0% 143 37.1% 2 50% - - - NULL MGAT5 4249 genome.wustl.edu 37 2 135199351 135199351 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002410.3 +1 validated p.M631T 1.000 17 0% 34 47.1% 0 - possibly_damaging(0.794) tolerated(0.67) neutral(0.300) NULL KYNU 8942 genome.wustl.edu 37 2 143685266 143685266 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003937.2 +1 reviewed p.I110N 0.998 145 0% 163 39.9% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases GALNT13 114805 genome.wustl.edu 37 2 155265593 155265593 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052917.2 +1 validated p.Q465R 1.000 219 0% 84 41.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins ACVR1C 130399 genome.wustl.edu 37 2 158390510 158390510 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145259.2 -1 validated p.N468D 1.000 82 0% 59 42.4% 0 - probably_damaging(0.994) tolerated(0.31) deleterious(0.479) HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ACVR1C 130399 genome.wustl.edu 37 2 158406724 158406724 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145259.2 -1 validated p.V242A 0.998 179 0% 199 39.7% 0 - possibly_damaging(0.687) deleterious(0) deleterious(0.690) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PKP4 8502 genome.wustl.edu 37 2 159481832 159481832 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003628.3 +1 reviewed p.H349R 1.000 7 0.000 37 0.595 5 40% probably_damaging(0.957) tolerated(0.12) deleterious(0.661) NULL TANC1 85461 genome.wustl.edu 37 2 160055563 160055563 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033394.2 +1 validated p.T1081 1.000 65 0% 128 48.4% 3 33.3% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat PLA2R1 22925 genome.wustl.edu 37 2 160826696 160826696 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007366.3 -1 validated p.I875V 1.000 196 0% 60 38.3% 0 - possibly_damaging(0.524) tolerated(0.45) neutral(0.189) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like PLA2R1 22925 genome.wustl.edu 37 2 160843804 160843804 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007366.3 -1 validated p.C634R 1.000 50 0% 31 41.9% 3 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like ITGB6 3694 genome.wustl.edu 37 2 160983020 160983020 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000888.3 -1 provisional p.S585P 0.955 33 0% 29 44.8% 0 - probably_damaging(0.977) deleterious(0.02) deleterious(0.802) HMMPfam_EGF_2,superfamily_EGF/Laminin COBLL1 22837 genome.wustl.edu 37 2 165551729 165551729 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014900.3 -1 validated p.Y763H 1.000 325 0% 224 45.1% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SCN1A 6323 genome.wustl.edu 37 2 166848296 166848296 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006920.4 -1 reviewed p.Q1819R 1.000 98 0% 46 39.1% 0 - benign(0.117) deleterious(0.02) neutral(0.393) NULL SCN9A 6335 genome.wustl.edu 37 2 167056090 167056090 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002977.3 -1 reviewed p.S1676G 1.000 241 0% 269 42% 0 - benign(0.135) deleterious(0.02) neutral(0.395) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SCN9A 6335 genome.wustl.edu 37 2 167168024 167168024 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002977.3 -1 reviewed p.Y81* 1.000 40 0% 42 40.5% 0 - - - - superfamily_Voltage-gated potassium channels XIRP2 129446 genome.wustl.edu 37 2 168106682 168106682 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152381.4 +1 validated p.F2927S 1.000 53 0% 40 57.5% 0 - probably_damaging(1) tolerated(0.31) deleterious(0.527) NULL XIRP2 129446 genome.wustl.edu 37 2 168108293 168108293 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152381.4 +1 validated p.G3464E 0.997 66 0% 36 47.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL LRP2 4036 genome.wustl.edu 37 2 169993921 169993921 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004525.2 -1 reviewed p.K4534T 0.007 90 0% 83 43.4% 0 - benign(0) tolerated(0.51) neutral(0.009) NULL LRP2 4036 genome.wustl.edu 37 2 170034342 170034342 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004525.2 -1 reviewed p.H3455R 0.998 179 0% 143 46.2% 0 - benign(0.061) tolerated(0.18) neutral(0.060) HMMPfam_Ldl_recept_b,superfamily_SSF63825 PPIG 9360 genome.wustl.edu 37 2 170493790 170493790 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004792.2 +1 validated p.S674 0.852 114 0% 67 34.3% 16 43.7% - - - NULL C2orf77 129881 genome.wustl.edu 37 2 170531438 170531438 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001085447.1 -1 validated p.K136R 1.000 217 0% 138 44.9% 0 - probably_damaging(0.979) tolerated(0.09) deleterious(0.718) NULL PHOSPHO2 493911 genome.wustl.edu 37 2 170557502 170557502 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001008489.2 +1 provisional p.F7 1.000 105 0% 95 38.9% 2 50% - - - HMMPfam_Put_Phosphatase,superfamily_HAD-like MYO3B 140469 genome.wustl.edu 37 2 171070934 171070934 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138995.3 +1 validated p.R123G 0.998 39 0% 64 50% 0 - benign(0.001) tolerated(0.16) neutral(0.059) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ZAK 51776 genome.wustl.edu 37 2 174052288 174052288 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016653.2 +1 reviewed p.M118L 1.000 231 0% 77 46.8% 1 0% possibly_damaging(0.64) deleterious(0.02) deleterious(0.607) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) GPR155 151556 genome.wustl.edu 37 2 175346304 175346304 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001033045.2 -1 validated p.P127 0.532 96 0% 147 46.9% 0 - - - - HMMPfam_Mem_trans HOXD4 3233 genome.wustl.edu 37 2 177016574 177016574 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014621.2 +1 reviewed p.S71 0.282 4 0.000 12 0.500 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179414325 179414325 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133378.4 -1 reviewed p.L28140R 0.999 70 0% 60 41.7% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179426396 179426396 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000356127 -1 known p.P25585S 1.000 80 0% 52 9.6% 0 - possibly_damaging(0.935) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179437215 179437215 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133378.4 -1 reviewed p.V21980A 0.963 75 0% 58 36.2% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179446419 179446419 + Silent SNP G G T rs187378247 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133378.4 -1 reviewed p.S19624* 0.045 63 0% 41 41.5% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179463771 179463771 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000356127 -1 known p.D16319G 1.000 76 0% 41 43.9% 1 100% benign(0.04) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179481335 179481335 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000356127 -1 known p.E13493D 1.000 128 0% 57 42.1% 1 0% benign(0.29) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179604346 179604346 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000342175 -1 known p.F4367 0.000 113 0% 58 39.7% 0 - - - - NULL CCDC141 285025 genome.wustl.edu 37 2 179701836 179701836 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173648.2 -1 provisional p.S795 0.000 43 0% 31 41.9% 0 - - - - NULL NCKAP1 10787 genome.wustl.edu 37 2 183791546 183791546 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_205842.1 -1 validated p.M1096V 1.000 230 0% 91 38.5% 8 25% benign(0.123) tolerated(0.12) neutral(0.271) HMMPfam_Nckap1 NCKAP1 10787 genome.wustl.edu 37 2 183793628 183793628 + Splice_Site SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_205842.1 -1 validated e29-1 1.000 97 0% 49 38.8% 0 - - - - - COL5A2 1290 genome.wustl.edu 37 2 189932994 189932994 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000393.3 -1 reviewed p.G420 0.166 51 0% 52 28.8% 0 - - - - HMMPfam_Collagen WDR75 84128 genome.wustl.edu 37 2 190329926 190329926 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032168.1 +1 provisional p.E412G 0.851 155 0% 89 37.1% 13 53.8% benign(0.005) tolerated(0.37) neutral(0.019) superfamily_WD40_like MYO1B 4430 genome.wustl.edu 37 2 192248004 192248004 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130158.1 +1 validated e14-2 1.000 251 0% 139 45.3% 0 - - - - - SDPR 8436 genome.wustl.edu 37 2 192711304 192711304 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004657.5 -1 reviewed p.E116D 1.000 11 0% 75 37.3% 1 0% possibly_damaging(0.717) tolerated(0.08) deleterious(0.559) NULL DNAH7 56171 genome.wustl.edu 37 2 196682518 196682518 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018897.2 -1 validated p.G3109 0.482 151 0% 138 42.8% 1 0% - - - NULL DNAH7 56171 genome.wustl.edu 37 2 196765186 196765186 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018897.2 -1 validated p.P1456 0.769 46 0% 56 39.3% 0 - - - - HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases GTF3C3 9330 genome.wustl.edu 37 2 197664288 197664288 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012086.2 -1 provisional p.I16 0.985 86 0% 166 50.6% 0 - - - - NULL PGAP1 80055 genome.wustl.edu 37 2 197755585 197755585 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024989.3 -1 validated p.I380 1.000 134 0% 95 36.8% 0 - - - - NULL RFTN2 130132 genome.wustl.edu 37 2 198436963 198436963 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144629.2 -1 validated p.K425 0.963 176 0% 165 43% 1 0% - - - NULL SGOL2 151246 genome.wustl.edu 37 2 201436260 201436260 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152524.5 +1 validated p.T397 0.995 42 0% 25 36% 0 - - - - NULL ENSG00000207116 0 genome.wustl.edu 37 2 201694782 201694782 + RNA SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000384388 +1 novel NULL 0.005 122 0% 108 52.8% 0 - - - - - NIF3L1 60491 genome.wustl.edu 37 2 201759985 201759985 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136039.2 +1 validated e3-2 0.981 112 0% 100 43% 7 100% - - - - CASP8 841 genome.wustl.edu 37 2 202141572 202141572 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080125.1 +1 reviewed p.M287T 1.000 73 0% 152 42.1% 3 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMSmart_SM00115,superfamily_Caspase-like ALS2CR11 151254 genome.wustl.edu 37 2 202359442 202359442 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000439140 -1 known p.R541M 0.962 43 0% 33 42.4% 0 - probably_damaging(0.999) - - NULL BMPR2 659 genome.wustl.edu 37 2 203420831 203420831 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001204.6 +1 reviewed p.S815G 0.358 46 0% 65 38.5% 5 40% benign(0) tolerated(0.74) neutral(0.002) NULL DYTN 391475 genome.wustl.edu 37 2 207569664 207569664 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001093730.1 -1 provisional p.L129P 1.000 127 0% 64 39.1% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_efhand_2,superfamily_SSF47473 CREB1 1385 genome.wustl.edu 37 2 208440111 208440111 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_134442.3 +1 reviewed p.I221M 1.000 38 0% 60 43.3% 3 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL RPE 6120 genome.wustl.edu 37 2 210880817 210880817 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_199229.1 +1 provisional p.I108T 1.000 114 0% 119 51.3% 5 20% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Ribul_P_3_epim,superfamily_Ribulose-phoshate binding barrel BARD1 580 genome.wustl.edu 37 2 215645705 215645705 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000465.2 -1 reviewed p.V298A 0.000 93 0% 53 24.5% 0 - benign(0.004) tolerated(0.72) neutral(0.002) NULL ABCA12 26154 genome.wustl.edu 37 2 215838758 215838758 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173076.2 -1 reviewed p.L1826S 0.993 388 0% 206 44.2% 0 - possibly_damaging(0.514) tolerated(0.54) neutral(0.180) NULL MARCH4 57574 genome.wustl.edu 37 2 217142543 217142543 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020814.2 -1 validated p.A239 0.996 18 0% 20 35% 0 - - - - NULL CXCR2 3579 genome.wustl.edu 37 2 219000311 219000311 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001557.3 +1 reviewed p.C263R 1.000 32 0% 53 39.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PRKAG3 53632 genome.wustl.edu 37 2 219692562 219692562 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017431.2 -1 reviewed p.W272R 1.000 104 0% 198 44.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CBS FEV 54738 genome.wustl.edu 37 2 219846787 219846787 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017521.2 -1 reviewed p.Y107H 1.000 9 0.000 67 0.433 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785 CCDC108 255101 genome.wustl.edu 37 2 219892704 219892704 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_194302.2 -1 provisional p.Y627H 0.449 13 0% 21 38.1% 1 0% possibly_damaging(0.466) tolerated(0.54) neutral(0.161) NULL CCDC108 255101 genome.wustl.edu 37 2 219903673 219903673 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_194302.2 -1 provisional p.L33P 0.003 163 0% 178 45.5% 0 - possibly_damaging(0.881) - - NULL INHA 3623 genome.wustl.edu 37 2 220439929 220439929 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002191.2 +1 reviewed p.N261I 0.952 16 0% 92 40.2% 4 0% benign(0.372) tolerated(0.06) neutral(0.441) HMMPfam_TGF_beta,superfamily_Cystine-knot cytokines EPHA4 2043 genome.wustl.edu 37 2 222298975 222298975 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004438.3 -1 reviewed p.A795T 1.000 58 0% 81 42% 0 - probably_damaging(0.999) deleterious(0.05) deleterious(0.836) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like WDFY1 57590 genome.wustl.edu 37 2 224777004 224777004 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020830.3 -1 reviewed p.R82Q 1.000 61 0% 86 50% 1 0% possibly_damaging(0.936) tolerated(0.43) neutral(0.395) HMMSmart_SM00320,superfamily_WD40 repeat-like DOCK10 55619 genome.wustl.edu 37 2 225729366 225729366 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014689.2 -1 validated p.H502 0.991 91 0% 122 44.3% 0 - - - - NULL COL4A4 1286 genome.wustl.edu 37 2 227872073 227872073 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000092.4 -1 reviewed p.S1681R 1.000 66 0% 197 36.5% 0 - unknown(0) deleterious(0) - HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like COL4A4 1286 genome.wustl.edu 37 2 227979372 227979372 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000092.4 -1 reviewed p.F177S 1.000 272 0% 105 36.2% 0 - possibly_damaging(0.847) tolerated(0.41) neutral(0.340) NULL COL4A3 1285 genome.wustl.edu 37 2 228173703 228173703 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000091.3 +1 reviewed p.N1517K 0.992 68 0% 71 38% 0 - unknown(0) deleterious(0.02) - HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like PID1 55022 genome.wustl.edu 37 2 230020653 230020653 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017933.4 -1 validated p.L51M 0.711 32 0% 40 45% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL SPATA3 130560 genome.wustl.edu 37 2 231861022 231861022 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_139073.3 +1 validated p.N25S 0.001 82 0% 255 43.5% 0 - possibly_damaging(0.763) tolerated(0.63) neutral(0.286) NULL HTR2B 3357 genome.wustl.edu 37 2 231974010 231974010 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000867.4 -1 validated p.L223 0.925 117 0% 55 41.8% 3 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like EFHD1 80303 genome.wustl.edu 37 2 233498649 233498649 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025202.3 +1 validated p.N79D 1.000 4 0.000 13 0.462 0 - possibly_damaging(0.484) deleterious(0.03) deleterious(0.525) NULL NGEF 25791 genome.wustl.edu 37 2 233748693 233748693 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000424488 -1 known p.Q125P 0.000 36 0% 99 52.5% 2 50% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ATG16L1 55054 genome.wustl.edu 37 2 234171859 234171859 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030803.6 +1 validated p.E98A 1.000 82 0% 80 40% 3 33.3% possibly_damaging(0.829) tolerated(0.16) neutral(0.374) superfamily_WD40 repeat-like,HMMPfam_ATG16 DGKD 8527 genome.wustl.edu 37 2 234357970 234357970 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152879.2 +1 reviewed p.R612S 0.988 15 0% 75 48% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL COL6A3 1293 genome.wustl.edu 37 2 238247749 238247749 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004369.3 -1 reviewed p.F2826L 1.000 95 0% 76 48.7% 7 0% possibly_damaging(0.88) - - NULL LRRFIP1 9208 genome.wustl.edu 37 2 238688168 238688168 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001137550.1 +1 validated p.Q639R 1.000 26 0% 47 42.6% 21 57.1% probably_damaging(0.963) tolerated(0.15) deleterious(0.647) NULL ESPNL 339768 genome.wustl.edu 37 2 239039396 239039396 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_194312.2 +1 validated p.R681 0.000 4 0.000 20 0.400 0 - - - - NULL PASK 23178 genome.wustl.edu 37 2 242063386 242063386 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015148.2 -1 validated p.L961P 0.000 13 0% 54 44.4% 7 28.5% benign(0.005) tolerated(0.36) neutral(0.020) NULL HDLBP 3069 genome.wustl.edu 37 2 242181891 242181891 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005336.3 -1 validated p.H718R 0.973 18 0% 54 53.7% 58 44.8% benign(0.005) deleterious(0.05) neutral(0.345) HMMSmart_KH,superfamily_SSF54791 ATG4B 23192 genome.wustl.edu 37 2 242593007 242593007 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013325.4 +1 reviewed p.C89R 1.000 8 0.000 44 0.318 32 56.2% benign(0.004) tolerated(0.58) neutral(0.005) HMMPfam_Peptidase_C54 CHL1 10752 genome.wustl.edu 37 3 361544 361544 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006614.2 +1 reviewed p.S29P 0.779 128 0% 67 46.3% 1 100% benign(0) tolerated(0.37) neutral(0.019) NULL CPNE9 151835 genome.wustl.edu 37 3 9771200 9771200 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153635.2 +1 validated p.F496V 1.000 21 0% 124 45.2% 1 0% possibly_damaging(0.86) deleterious(0.02) deleterious(0.716) superfamily_SSF53300 TADA3 10474 genome.wustl.edu 37 3 9825750 9825750 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006354.2 -1 reviewed p.L356 0.991 9 0.000 31 0.290 236 49.1% - - - HMMPfam_Ada3 TMEM111 55831 genome.wustl.edu 37 3 10016098 10016098 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018447.1 -1 provisional p.I128V 1.000 116 0% 108 37% 51 49% benign(0.006) tolerated(0.31) neutral(0.027) HMMPfam_DUF850 SEC13 6396 genome.wustl.edu 37 3 10345786 10345786 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_183352.1 -1 reviewed p.K260R 1.000 26 0% 33 45.5% 194 42.7% benign(0.102) tolerated(0.28) neutral(0.040) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 FGD5 152273 genome.wustl.edu 37 3 14862754 14862754 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152536.3 +1 validated p.R726G 0.048 16 0% 44 29.5% 0 - probably_damaging(0.961) deleterious(0) deleterious(0.849) NULL FGD5 152273 genome.wustl.edu 37 3 14939507 14939507 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152536.3 +1 validated p.A991T 0.005 17 0% 25 68% 0 - benign(0) tolerated(0.35) neutral(0.021) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) ZFYVE20 64145 genome.wustl.edu 37 3 15131961 15131961 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022340.2 -1 validated p.Y78 0.998 145 0% 233 46.8% 0 - - - - NULL ANKRD28 23243 genome.wustl.edu 37 3 15727531 15727531 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015199.2 -1 provisional p.G686E 1.000 137 0% 158 42.4% 1 0% probably_damaging(0.999) tolerated(0.12) deleterious(0.751) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat KCNH8 131096 genome.wustl.edu 37 3 19295166 19295166 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144633.2 +1 reviewed p.N33D 1.000 127 0% 73 50.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF55785 SGOL1 151648 genome.wustl.edu 37 3 20212685 20212685 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001012410.2 -1 provisional p.L441P 0.996 68 0% 81 53.1% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL LRRC3B 116135 genome.wustl.edu 37 3 26751690 26751690 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052953.2 +1 provisional p.V176E 1.000 38 0% 23 21.7% 0 - benign(0.003) tolerated(1) - superfamily_SSF52058 ZCWPW2 152098 genome.wustl.edu 37 3 28476663 28476663 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000428875 +1 known p.W115* 1.000 119 0% 78 44.9% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_PWWP,superfamily_Tudor/PWWP/MBT TGFBR2 7048 genome.wustl.edu 37 3 30713624 30713624 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001024847.2 +1 reviewed p.L342 0.544 30 0% 59 45.8% 2 50% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PDCD6IP 10015 genome.wustl.edu 37 3 33895379 33895379 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013374.4 +1 validated p.H633 0.999 67 0% 44 40.9% 2 0% - - - NULL GOLGA4 2803 genome.wustl.edu 37 3 37368077 37368077 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002078.4 +1 reviewed p.Q1567R 0.940 46 0% 31 35.5% 4 50% benign(0.091) deleterious(0.05) neutral(0.352) NULL DLEC1 9940 genome.wustl.edu 37 3 38153707 38153707 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007337.2 +1 reviewed p.M1174T 0.927 23 0% 44 40.9% 10 60% benign(0.001) tolerated(0.33) neutral(0.024) NULL DLEC1 9940 genome.wustl.edu 37 3 38161956 38161956 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007337.2 +1 reviewed p.S1574 0.702 29 0% 67 35.8% 24 16.6% - - - NULL XYLB 9942 genome.wustl.edu 37 3 38438622 38438622 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005108.3 +1 reviewed p.C470 0.986 113 0% 247 44.1% 1 100% - - - HMMPfam_FGGY_C,superfamily_SSF53067 WDR48 57599 genome.wustl.edu 37 3 39129639 39129639 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020839.2 +1 provisional p.R499* 0.999 57 0% 76 42.1% 2 0% - - - NULL GORASP1 64689 genome.wustl.edu 37 3 39144201 39144201 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031899.2 -1 reviewed p.R106C 0.928 44 0% 133 45.9% 10 20% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) superfamily_PDZ domain-like,HMMPfam_GRASP55_65 XIRP1 165904 genome.wustl.edu 37 3 39226116 39226116 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_194293.2 -1 provisional p.T1607 0.000 37 0% 170 44.1% 0 - - - - NULL CTNNB1 1499 genome.wustl.edu 37 3 41266125 41266125 + Missense_Mutation SNP C C T rs121913413 byCluster TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098209.1 +1 reviewed p.T41I 1.000 33 0% 32 56.2% 23 34.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ANO10 55129 genome.wustl.edu 37 3 43640117 43640117 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018075.3 -1 validated p.I127L 1.000 303 0% 166 42.8% 0 - probably_damaging(0.974) deleterious(0) deleterious(0.861) NULL ABHD5 51099 genome.wustl.edu 37 3 43743874 43743874 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016006.4 +1 reviewed p.N101D 0.000 152 0% 164 44.5% 2 0% benign(0) tolerated(0.87) neutral(0.001) superfamily_SSF53474 ABHD5 51099 genome.wustl.edu 37 3 43759311 43759311 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016006.4 +1 reviewed p.I308V 1.000 83 0% 64 43.8% 8 50% benign(0.005) tolerated(0.38) neutral(0.018) HMMPfam_Abhydrolase_1,superfamily_SSF53474 C3orf77 375337 genome.wustl.edu 37 3 44283874 44283874 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145030.1 +1 validated p.L110S 0.001 15 0% 39 56.4% 0 - probably_damaging(0.989) deleterious(0.01) deleterious(0.845) NULL C3orf77 375337 genome.wustl.edu 37 3 44286630 44286630 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145030.1 +1 validated p.N878D 0.305 68 0% 111 39.6% 0 - benign(0.039) tolerated(0.12) neutral(0.263) NULL CCR5 1234 genome.wustl.edu 37 3 46414381 46414381 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000579.3 +1 reviewed e1-2 0.728 28 0% 37 45.9% 0 - - - - - FBXW12 285231 genome.wustl.edu 37 3 48423486 48423486 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207102.2 +1 validated p.H402Q 0.000 66 0% 89 43.8% 0 - probably_damaging(0.999) tolerated(0.39) deleterious(0.506) superfamily_WD40_like PLXNB1 5364 genome.wustl.edu 37 3 48460728 48460728 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000448774 -1 known p.F725C 0.986 5 0.000 22 0.318 28 57.1% unknown(0) - - NULL IMPDH2 3615 genome.wustl.edu 37 3 49063774 49063774 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000884.2 -1 reviewed p.I330T 1.000 53 0% 175 41.1% 46 43.4% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED,superfamily_SSF51412 LAMB2 3913 genome.wustl.edu 37 3 49159217 49159217 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002292.3 -1 reviewed p.L1667P 0.954 31 0% 137 36.5% 328 44.8% possibly_damaging(0.949) deleterious(0.01) deleterious(0.798) NULL CDHR4 389118 genome.wustl.edu 37 3 49836820 49836820 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001007540.2 -1 provisional p.G34S 0.855 52 0% 214 48.6% 1 0% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL MON1A 84315 genome.wustl.edu 37 3 49947800 49947800 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032355.3 -1 validated p.F474L 1.000 17 0% 107 43.9% 17 47% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) HMMPfam_Mon1 VPRBP 9730 genome.wustl.edu 37 3 51458366 51458366 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014703.2 -1 validated p.I633 1.000 72 0% 76 48.7% 2 50% - - - superfamily_ARM repeat ALAS1 211 genome.wustl.edu 37 3 52238026 52238026 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000688.4 +1 validated p.K192T 1.000 78 0% 90 48.9% 5 40% possibly_damaging(0.73) tolerated(0.4) neutral(0.283) NULL WDR82 80335 genome.wustl.edu 37 3 52294471 52294471 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025222.3 -1 validated p.E158G 1.000 64 0% 128 33.6% 13 69.2% benign(0.022) tolerated(0.16) neutral(0.060) HMMSmart_SM00320,superfamily_WD40 repeat-like PBRM1 55193 genome.wustl.edu 37 3 52637555 52637555 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018165.4 -1 validated p.R889* 0.960 301 0% 128 38.3% 0 - - - - NULL FAM208A 23272 genome.wustl.edu 37 3 56657354 56657354 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015224.3 -1 validated p.D1138V 0.005 187 0% 91 49.5% 19 31.5% benign(0.052) tolerated(0.1) neutral(0.289) NULL HESX1 8820 genome.wustl.edu 37 3 57232257 57232257 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003865.2 -1 reviewed p.K176E 0.995 271 0.4% 178 55.1% 2 50% benign(0.253) deleterious(0.01) neutral(0.432) NULL FLNB 2317 genome.wustl.edu 37 3 58080675 58080675 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001457.3 +1 reviewed p.K300 1.000 84 0% 54 40.7% 1 100% - - - HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin PTPRG 5793 genome.wustl.edu 37 3 62142877 62142877 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002841.3 +1 reviewed p.P273 0.006 72 0% 55 45.5% 1 100% - - - HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase ADAMTS9 56999 genome.wustl.edu 37 3 64524944 64524944 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182920.1 -1 reviewed p.S1850G 0.345 35 0% 63 39.7% 4 25% benign(0.072) tolerated(0.38) neutral(0.023) HMMPfam_GON LRIG1 26018 genome.wustl.edu 37 3 66431203 66431203 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015541.2 -1 validated p.P951 0.007 13 0% 27 33.3% 98 32.6% - - - NULL SUCLG2 8801 genome.wustl.edu 37 3 67578573 67578573 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003848.3 -1 reviewed p.G134S 1.000 326 0% 137 38% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ATP-grasp_2,superfamily_SSF56059 RYBP 23429 genome.wustl.edu 37 3 72428499 72428499 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012234.4 -1 validated p.K70E 1.000 431 0% 200 25% 5 20% unknown(0) tolerated(0.15) - NULL RYBP 23429 genome.wustl.edu 37 3 72428501 72428501 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012234.4 -1 validated p.E69G 1.000 430 0% 192 41.7% 5 40% unknown(0) tolerated(0.12) - NULL ROBO2 6092 genome.wustl.edu 37 3 77614115 77614115 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002942.3 +1 reviewed p.S565G 1.000 30 0% 47 46.8% 1 100% benign(0.006) tolerated(1) - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III GBE1 2632 genome.wustl.edu 37 3 81548282 81548282 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000158.3 -1 reviewed p.M677T 0.872 112 0% 96 34.4% 6 33.3% - - - NULL GBE1 2632 genome.wustl.edu 37 3 81584449 81584449 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000264326 -1 known p.N611D 0.993 179 0% 73 54.8% 4 0% benign(0) tolerated(1) - HMMPfam_Alpha-amylase_C,superfamily_Glycosyl hydrolase domain FILIP1L 11259 genome.wustl.edu 37 3 99567753 99567753 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182909.2 -1 validated p.T923S 0.971 133 0% 148 41.2% 5 0% probably_damaging(0.991) tolerated(0.33) neutral(0.468) NULL FILIP1L 11259 genome.wustl.edu 37 3 99569678 99569678 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182909.2 -1 validated p.V281A 1.000 153 0% 165 35.8% 2 0% benign(0) tolerated(1) - HMMPfam_CortBP2 TBC1D23 55773 genome.wustl.edu 37 3 100016877 100016877 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018309.2 +1 validated p.N329 1.000 72 1.4% 81 38.3% 2 0% - - - superfamily_Rhodanese/Cell cycle control phosphatase TBC1D23 55773 genome.wustl.edu 37 3 100037936 100037936 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018309.2 +1 validated p.S556T 1.000 117 0% 68 38.2% 2 0% probably_damaging(0.991) tolerated(0.54) neutral(0.452) NULL IMPG2 50939 genome.wustl.edu 37 3 100963522 100963522 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016247.2 -1 validated p.S551 0.922 104 0% 61 39.3% 0 - - - - NULL IMPG2 50939 genome.wustl.edu 37 3 101023017 101023017 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016247.2 -1 validated p.S158 0.998 151 0% 114 50% 0 - - - - NULL ZBTB11 27107 genome.wustl.edu 37 3 101390757 101390757 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000461821 -1 known p.V204A 0.000 57 0% 99 40.4% 0 - unknown(0) - - NULL HHLA2 11148 genome.wustl.edu 37 3 108076817 108076817 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007072.2 +1 provisional p.L271P 0.859 168 0% 64 28.1% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 MYH15 22989 genome.wustl.edu 37 3 108189565 108189565 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014981.1 -1 validated p.T475A 1.000 58 0% 64 48.4% 0 - benign(0.056) tolerated(1) neutral(0.004) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases KIAA1524 57650 genome.wustl.edu 37 3 108279571 108279571 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020890.2 -1 validated p.L584 0.988 311 0% 135 40.7% 1 0% - - - NULL KIAA1524 57650 genome.wustl.edu 37 3 108288299 108288299 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020890.2 -1 validated p.Q350 0.993 55 0% 22 31.8% 1 100% - - - superfamily_ARM repeat DZIP3 9666 genome.wustl.edu 37 3 108353782 108353782 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014648.3 +1 validated p.K294R 0.999 326 0% 80 46.3% 0 - possibly_damaging(0.892) deleterious(0) deleterious(0.796) NULL PHLDB2 90102 genome.wustl.edu 37 3 111685472 111685472 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001134438.1 +1 validated p.S1030 0.991 35 0% 69 44.9% 2 0% - - - NULL SLC9A10 285335 genome.wustl.edu 37 3 111927219 111927219 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_183061.1 -1 validated p.Y598D 0.001 137 0% 31 41.9% 0 - possibly_damaging(0.512) tolerated(0.12) neutral(0.432) superfamily_Voltage-gated potassium channels WDR52 55779 genome.wustl.edu 37 3 113122749 113122749 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018338.3 -1 validated p.M374L 0.612 131 0% 144 41% 7 85.7% benign(0) tolerated(1) - HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 KIAA2018 205717 genome.wustl.edu 37 3 113383237 113383237 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001009899.2 -1 validated p.D60G 1.000 338 0% 100 34% 0 - benign(0.039) deleterious(0.05) neutral(0.347) HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain KIAA1407 57577 genome.wustl.edu 37 3 113720512 113720512 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020817.1 -1 predicted p.Q698P 1.000 419 0% 177 38.4% 10 70% probably_damaging(0.989) tolerated(0.08) deleterious(0.740) NULL POGLUT1 56983 genome.wustl.edu 37 3 119211199 119211199 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152305.2 +1 validated p.E365* 1.000 178 0% 136 39% 3 0% - - - HMMSmart_SM00672,HMMPfam_DUF821 STXBP5L 9515 genome.wustl.edu 37 3 121100198 121100198 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014980.2 +1 validated p.K826 1.000 91 0% 64 45.3% 0 - - - - NULL EAF2 55840 genome.wustl.edu 37 3 121573665 121573665 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018456.4 +1 validated p.K111 1.000 34 0% 29 58.6% 16 43.7% - - - HMMPfam_EAF SLC15A2 6565 genome.wustl.edu 37 3 121642109 121642110 + Frame_Shift_Ins INS - - T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021082.3 +1 validated p.L334fs 0.999:0.995 - - - - - - - - - HMMPfam_PTR2,superfamily_MFS_gen_substrate_transporter ILDR1 286676 genome.wustl.edu 37 3 121720678 121720678 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_175924.2 -1 provisional p.W138* 1.000 65 0% 143 43.4% 2 50% - - - HMMSmart_IG,superfamily_SSF48726 PARP9 83666 genome.wustl.edu 37 3 122274418 122274418 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031458.2 -1 validated p.A235 0.994 91 0% 128 42.2% 4 75% - - - HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like HSPBAP1 79663 genome.wustl.edu 37 3 122459289 122459289 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024610.4 -1 provisional p.Q457P 0.000 126 0% 220 46.4% 41 56% possibly_damaging(0.531) deleterious(0.02) deleterious(0.562) NULL RPN1 6184 genome.wustl.edu 37 3 128344420 128344420 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002950.3 -1 reviewed p.F451S 1.000 69 0% 91 50.5% 323 46.7% possibly_damaging(0.819) deleterious(0.03) deleterious(0.674) HMMPfam_Ribophorin_I PLXND1 23129 genome.wustl.edu 37 3 129291780 129291780 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015103.2 -1 validated p.V948M 1.000 4 0.000 47 0.404 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains COL6A5 256076 genome.wustl.edu 37 3 130107955 130107955 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153264.5 +1 validated p.I798 0.018 105 0% 73 42.5% 0 - - - - HMMSmart_VWA,superfamily_SSF53300 COL6A5 256076 genome.wustl.edu 37 3 130114088 130114088 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153264.5 +1 validated p.S1116 0.204 88 0% 57 31.6% 0 - - - - HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 COL6A5 256076 genome.wustl.edu 37 3 130116666 130116666 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153264.5 +1 validated p.S1270G 0.168 109 0% 88 43.2% 0 - benign(0.058) - - superfamily_SSF53300 PIK3R4 30849 genome.wustl.edu 37 3 130463893 130463893 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014602.2 -1 validated p.I57S 1.000 76 0% 96 35.4% 0 - benign(0.229) tolerated(0.1) neutral(0.309) HMMPfam_Pkinase_Tyr,superfamily_Kinase_like DNAJC13 23317 genome.wustl.edu 37 3 132211364 132211364 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015268.3 +1 validated p.Y1244H 1.000 123 0% 83 42.2% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_ARM repeat AMOTL2 51421 genome.wustl.edu 37 3 134078146 134078146 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016201.2 -1 reviewed p.A695T 0.334 17 0% 59 50.8% 2 50% possibly_damaging(0.692) tolerated(0.29) neutral(0.277) NULL MSL2 55167 genome.wustl.edu 37 3 135870183 135870184 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018133.3 -1 validated p.A513fs 1.000:1.000 - - - - - - - - - NULL STAG1 10274 genome.wustl.edu 37 3 136141831 136141831 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005862.2 -1 reviewed p.E569G 1.000 355 0% 182 40.7% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM-type_fold DBR1 51163 genome.wustl.edu 37 3 137881151 137881151 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016216.2 -1 validated p.N405 0.020 159 0% 153 41.8% 4 50% - - - NULL FAIM 55179 genome.wustl.edu 37 3 138341081 138341081 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001033030.1 +1 validated p.Y89H 0.356 119 0% 74 41.9% 9 66.6% benign(0) tolerated(0.57) neutral(0.006) HMMPfam_FAIM1 RASA2 5922 genome.wustl.edu 37 3 141328724 141328724 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006506.2 +1 reviewed p.C779R 1.000 165 0% 72 37.5% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GK5 256356 genome.wustl.edu 37 3 141906610 141906610 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001039547.2 -1 validated p.A185 0.102 185 0% 125 43.2% 0 - - - - HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain AGTR1 185 genome.wustl.edu 37 3 148459374 148459374 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000685.4 +1 reviewed p.Y184 0.025 117 0% 101 40.6% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like HPS3 84343 genome.wustl.edu 37 3 148880571 148880571 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032383.3 +1 reviewed p.Q796R 1.000 119 0% 91 46.2% 52 51.9% possibly_damaging(0.517) tolerated(0.06) deleterious(0.496) NULL CP 1356 genome.wustl.edu 37 3 148897439 148897439 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000096.3 -1 reviewed p.L855 0.000 137 0% 76 40.8% 32 53.1% - - - superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3 RNF13 11342 genome.wustl.edu 37 3 149678722 149678722 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007282.4 +1 reviewed p.L326S 0.908 70 0% 94 52.1% 4 25% possibly_damaging(0.909) deleterious(0.01) deleterious(0.768) NULL AADACL2 344752 genome.wustl.edu 37 3 151475372 151475372 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207365.3 +1 validated p.K399T 0.203 136 0% 57 43.9% 0 - benign(0.11) deleterious(0.04) neutral(0.357) superfamily_alpha/beta-Hydrolases MBNL1 4154 genome.wustl.edu 37 3 152165443 152165443 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207293.1 +1 validated p.K299R 1.000 104 0% 97 36.1% 6 33.3% probably_damaging(0.955) deleterious(0.02) deleterious(0.782) NULL SLC33A1 9197 genome.wustl.edu 37 3 155571118 155571118 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004733.2 -1 reviewed p.A223 0.029 31 0% 86 50% 1 0% - - - superfamily_MFS general substrate transporter SMC4 10051 genome.wustl.edu 37 3 160141268 160141268 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001002800.1 +1 validated p.R692H 1.000 159 0.6% 89 42.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases SMC4 10051 genome.wustl.edu 37 3 160141369 160141369 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001002800.1 +1 validated p.R726G 0.998 268 0% 139 46.8% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases SMC4 10051 genome.wustl.edu 37 3 160150823 160150823 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001002800.1 +1 validated p.P1180 0.976 110 0% 104 48.1% 3 100% - - - HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases LRRC31 79782 genome.wustl.edu 37 3 169574573 169574573 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024727.2 -1 validated p.Q192R 0.162 177 0% 88 37.5% 0 - possibly_damaging(0.701) tolerated(0.13) deleterious(0.504) superfamily_RNI-like PHC3 80012 genome.wustl.edu 37 3 169820416 169820416 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024947.3 -1 validated p.R895H 1.000 50 0% 20 55% 5 60% probably_damaging(0.999) tolerated(0.07) deleterious(0.809) NULL PHC3 80012 genome.wustl.edu 37 3 169846843 169846843 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024947.3 -1 validated p.S473P 1.000 57 0% 85 34.1% 1 0% benign(0.009) tolerated(0.14) neutral(0.250) NULL TNIK 23043 genome.wustl.edu 37 3 170885009 170885009 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015028.2 -1 validated p.S275I 1.000 206 0% 136 42.6% 0 - benign(0.088) tolerated(0.18) neutral(0.062) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase NLGN1 22871 genome.wustl.edu 37 3 173998822 173998822 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014932.2 +1 reviewed p.Q734R 1.000 90 0% 63 36.5% 0 - probably_damaging(0.989) deleterious(0) deleterious(0.884) NULL PIK3CA 5290 genome.wustl.edu 37 3 178936095 178936095 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006218.2 +1 reviewed p.Q546P 1.000 107 0% 71 33.8% 0 - probably_damaging(0.999) tolerated(0.05) deleterious(0.836) HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold ZNF639 51193 genome.wustl.edu 37 3 179051976 179051976 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016331.1 +1 provisional p.C408 1.000 112 0% 113 33.6% 14 21.4% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PEX5L 51555 genome.wustl.edu 37 3 179593217 179593217 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016559.1 -1 provisional p.D185V 1.000 217 0% 294 41.2% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL MCCC1 56922 genome.wustl.edu 37 3 182770009 182770009 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020166.3 -1 reviewed p.V298A 1.000 86 0% 124 40.3% 1 100% benign(0.045) deleterious(0.03) neutral(0.367) HMMPfam_CPSase_L_D2,superfamily_SSF56059 B3GNT5 84002 genome.wustl.edu 37 3 182988032 182988032 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032047.4 +1 reviewed p.E149G 1.000 49 0% 45 44.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Galactosyl_T YEATS2 55689 genome.wustl.edu 37 3 183476686 183476686 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018023.4 +1 validated p.V530A 0.922 144 0% 113 38.1% 0 - benign(0) tolerated(1) - NULL PARL 55486 genome.wustl.edu 37 3 183551561 183551561 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018622.5 -1 reviewed p.G294V 1.000 38 0% 76 36.8% 82 43.9% possibly_damaging(0.833) deleterious(0.02) deleterious(0.701) HMMPfam_Rhomboid DVL3 1857 genome.wustl.edu 37 3 183888118 183888118 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004423.3 +1 reviewed p.S576G 1.000 8 0.000 24 0.500 62 41.9% unknown(0) deleterious(0.03) - NULL PSMD2 5708 genome.wustl.edu 37 3 184024578 184024578 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002808.3 +1 reviewed p.E664K 1.000 140 0% 303 38.6% 59 30.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_ARM-type_fold TRA2B 6434 genome.wustl.edu 37 3 185639898 185639898 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004593.2 -1 validated p.N180S 1.000 125 0% 128 46.1% 26 65.3% benign(0.018) tolerated(0.92) neutral(0.001) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD TBCCD1 55171 genome.wustl.edu 37 3 186269013 186269013 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001134415.1 -1 validated p.I534L 0.997 129 0% 148 43.9% 12 58.3% benign(0.001) tolerated(0.8) neutral(0.001) NULL DNAJB11 51726 genome.wustl.edu 37 3 186289893 186289893 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016306.4 +1 validated p.F26L 1.000 71 0% 159 44% 9 44.4% benign(0.146) tolerated(0.11) neutral(0.284) HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain EIF4A2 1974 genome.wustl.edu 37 3 186505341 186505341 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001967.3 +1 validated p.S323P 1.000 112 0% 208 46.6% 132 47.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases BCL6 604 genome.wustl.edu 37 3 187447093 187447093 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130845.1 -1 reviewed p.P367L 1.000 30 0% 138 13% 28 7.1% benign(0.002) deleterious(0.02) neutral(0.383) NULL BCL6 604 genome.wustl.edu 37 3 187447287 187447287 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130845.1 -1 reviewed p.E302D 1.000 38 0% 130 37.7% 37 40.5% benign(0.049) tolerated(0.24) neutral(0.041) NULL BCL6 604 genome.wustl.edu 37 3 187447566 187447566 + Silent SNP G G T rs33922911 byCluster;byFrequency;by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130845.1 -1 reviewed p.S209 0.099 22 0% 92 46.7% 17 70.5% - - - NULL TP63 8626 genome.wustl.edu 37 3 189526205 189526205 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003722.4 +1 reviewed p.D157Y 1.000 51 0% 159 43.4% 0 - probably_damaging(0.979) deleterious(0.01) deleterious(0.828) NULL LEPREL1 55214 genome.wustl.edu 37 3 189704624 189704624 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018192.3 -1 validated p.L381M 0.997 72 0% 68 32.4% 0 - possibly_damaging(0.644) deleterious(0.05) deleterious(0.571) NULL IL1RAP 3556 genome.wustl.edu 37 3 190374360 190374360 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000317757 +1 known p.T676 0.974 20 0% 55 41.8% 0 - - - - NULL MB21D2 151963 genome.wustl.edu 37 3 192516950 192516950 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178496.3 -1 validated p.D234G 1.000 91 0% 145 51% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ATP13A5 344905 genome.wustl.edu 37 3 192997193 192997193 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198505.2 -1 provisional p.L1093M 0.864 87 0% 68 38.2% 0 - benign(0.012) tolerated(0.38) neutral(0.018) superfamily_SSF81665 ATP13A4 84239 genome.wustl.edu 37 3 193185121 193185121 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000428352 -1 known p.P6L 0.022 25 0% 30 43.3% 0 - - - - HMMPfam_E1-E2_ATPase OPA1 4976 genome.wustl.edu 37 3 193372701 193372701 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_130837.2 +1 reviewed p.I688T 1.000 117 0% 56 35.7% 6 33.3% possibly_damaging(0.879) deleterious(0.01) deleterious(0.748) NULL MUC4 4585 genome.wustl.edu 37 3 195513605 195513605 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018406.5 -1 reviewed p.P1616S 0.016 141 2.8% 286 11.9% 1 0% possibly_damaging(0.948) - - NULL LMLN 89782 genome.wustl.edu 37 3 197762718 197762718 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136049.2 +1 reviewed p.P594 0.979 73 0% 131 32.1% 1 0% - - - "HMMPfam_Peptidase_M8,superfamily_Metalloproteases (""zincins"") catalytic domain" GAK 2580 genome.wustl.edu 37 4 887767 887767 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005255.2 -1 validated p.F258I 1.000 8 0.000 51 0.471 11 54.5% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) superfamily_Kinase_like,HMMPfam_Pkinase SLC26A1 10861 genome.wustl.edu 37 4 984935 984935 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022042.2 -1 reviewed p.L186P 0.479 6 0.000 22 0.409 5 80% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL SLBP 7884 genome.wustl.edu 37 4 1698020 1698020 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006527.2 -1 reviewed p.R180* 0.997 131 0% 167 44.3% 9 0% - - - NULL WHSC1 7468 genome.wustl.edu 37 4 1957436 1957436 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001042424.2 +1 reviewed p.C845* 1.000 5 0.000 27 0.407 9 44.4% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD HAUS3 79441 genome.wustl.edu 37 4 2233702 2233702 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024511.5 -1 provisional p.E588D 0.997 136 0% 79 39.2% 3 33.3% probably_damaging(0.989) tolerated(0.61) neutral(0.444) NULL MFSD10 10227 genome.wustl.edu 37 4 2934906 2934906 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000507272 -1 known e3-2 1.000 14 0% 65 47.7% 30 36.6% - - - - NOP14 8602 genome.wustl.edu 37 4 2940929 2940929 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003703.1 -1 validated p.S820 0.000 144 0% 307 42% 10 30% - - - HMMPfam_Nop14 DOK7 285489 genome.wustl.edu 37 4 3491473 3491473 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173660.4 +1 reviewed p.L241P 1.000 4 0.000 22 0.409 2 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL TMEM128 85013 genome.wustl.edu 37 4 4239580 4239580 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032927.2 -1 provisional p.I137F 0.998 97 0% 128 26.6% 13 38.4% benign(0.139) deleterious(0.01) neutral(0.418) NULL CYTL1 54360 genome.wustl.edu 37 4 5016953 5016953 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000509419 -1 known p.Y68C 0.690 86 0% 138 43.5% 0 - - - - NULL KIAA0232 9778 genome.wustl.edu 37 4 6826412 6826412 + Splice_Site SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001100590.1 +1 validated e1+1 1.000 50 0% 72 43.1% 2 100% - - - - GRPEL1 80273 genome.wustl.edu 37 4 7064164 7064164 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025196.2 -1 provisional p.T85 0.517 90 0% 210 42.4% 34 44.1% - - - HMMPfam_GrpE SORCS2 57537 genome.wustl.edu 37 4 7533325 7533325 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020777.2 +1 reviewed p.N206S 1.000 19 0% 77 49.4% 0 - benign(0.004) tolerated(0.66) neutral(0.003) HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase HTRA3 94031 genome.wustl.edu 37 4 8305971 8305971 + Nonsense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_053044.2 +1 provisional p.Y387* 0.454 20 0% 85 32.9% 1 0% - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like LOC100287077 100287077 genome.wustl.edu 37 4 8620979 8620979 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002342426.1 -1 model p.Q152 0.000 8 0.000 42 0.548 0 - - - - NULL ENSG00000219492 0 genome.wustl.edu 37 4 9388999 9388999 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000508324 -1 known p.K5 0.846 265 0% 156 34.6% 0 - - - - NULL ZNF518B 85460 genome.wustl.edu 37 4 10445928 10445928 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_053042.2 -1 validated p.S675 0.978 95 0% 67 29.9% 1 0% - - - NULL RAB28 9364 genome.wustl.edu 37 4 13476025 13476025 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001017979.2 -1 reviewed p.L60V 0.942 176 0% 100 49% 5 60% benign(0) tolerated(1) - HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases BOD1L 259282 genome.wustl.edu 37 4 13597536 13597536 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_148894.2 -1 validated p.G2684 0.000 141 0% 115 46.1% 1 100% - - - NULL BOD1L 259282 genome.wustl.edu 37 4 13606000 13606000 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_148894.2 -1 validated p.S842T 1.000 369 0% 284 44.7% 0 - benign(0.068) deleterious(0.01) neutral(0.410) superfamily_SSF81995 CC2D2A 57545 genome.wustl.edu 37 4 15517530 15517530 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080522.2 +1 reviewed p.R307K 0.994 28 0% 51 43.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM200B 285550 genome.wustl.edu 37 4 15689465 15689465 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145191.1 +1 validated p.K289E 1.000 63 0% 55 43.6% 1 100% benign(0.176) tolerated(0.55) neutral(0.023) NULL TAPT1 202018 genome.wustl.edu 37 4 16215511 16215511 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153365.2 -1 reviewed p.L70 0.995 325 0% 178 48.9% 0 - - - - NULL MED28 80306 genome.wustl.edu 37 4 17623294 17623294 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025205.3 +1 provisional p.V104A 1.000 86 0% 81 34.6% 23 39.1% benign(0.104) tolerated(0.63) neutral(0.011) NULL LCORL 254251 genome.wustl.edu 37 4 17885652 17885652 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000382226 -1 known p.S500 1.000 112 0% 71 26.8% 1 0% - - - NULL SLIT2 9353 genome.wustl.edu 37 4 20550700 20550700 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004787.1 +1 provisional p.L813P 0.989 256 0% 122 45.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like PPARGC1A 10891 genome.wustl.edu 37 4 23814463 23814463 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013261.3 -1 reviewed p.H642 0.999 90 0% 97 41.2% 0 - - - - superfamily_RNA-binding domain RBD ZCCHC4 29063 genome.wustl.edu 37 4 25363488 25363488 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024936.2 +1 validated p.Y340C 1.000 68 0% 48 47.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RBPJ 3516 genome.wustl.edu 37 4 26432143 26432143 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005349.2 +1 validated p.R396G 1.000 62 0% 70 40% 63 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIG,superfamily_E set domains DTHD1 401124 genome.wustl.edu 37 4 36292120 36292120 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136536.3 +1 validated p.D48V 1.000 202 0% 102 40.2% 0 - benign(0.059) deleterious(0.02) neutral(0.387) NULL N4BP2 55728 genome.wustl.edu 37 4 40104192 40104192 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018177.3 +1 reviewed p.S243P 0.260 85 0% 52 51.9% 0 - benign(0) tolerated(0.26) neutral(0.034) NULL RBM47 54502 genome.wustl.edu 37 4 40440109 40440109 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098634.1 -1 validated p.Q268* 1.000 6 0.000 51 0.392 3 0% - - - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD ATP8A1 10396 genome.wustl.edu 37 4 42557994 42557994 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006095.2 -1 reviewed p.Q468 0.999 199 0% 168 51.2% 0 - - - - HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N GABRA4 2557 genome.wustl.edu 37 4 46979580 46979580 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000809.2 -1 reviewed p.I114N 1.000 201 0% 110 37.3% 0 - probably_damaging(0.992) deleterious(0.01) deleterious(0.853) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD NFXL1 152518 genome.wustl.edu 37 4 47886396 47886396 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152995.4 -1 validated p.L628S 0.718 41 0% 58 41.4% 3 33.3% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMSmart_SM00438 FIP1L1 81608 genome.wustl.edu 37 4 54324841 54324841 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030917.3 +1 reviewed p.Y507 1.000 83 0% 37 40.5% 60 36.6% - - - NULL CEP135 9662 genome.wustl.edu 37 4 56819412 56819412 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025009.3 +1 validated p.L92P 0.996 129 0% 108 47.2% 0 - possibly_damaging(0.501) deleterious(0) deleterious(0.612) NULL LPHN3 23284 genome.wustl.edu 37 4 62936114 62936114 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015236.4 +1 reviewed p.D1300Y 0.998 64 0% 69 42% 0 - possibly_damaging(0.453) deleterious(0) deleterious(0.593) HMMPfam_Latrophilin EPHA5 2044 genome.wustl.edu 37 4 66230764 66230764 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004439.5 -1 reviewed p.I736N 1.000 208 0% 96 42.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) CENPC1 1060 genome.wustl.edu 37 4 68359665 68359665 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001812.2 -1 reviewed p.T743S 0.987 138 0% 114 43% 9 33.3% benign(0.067) tolerated(0.48) neutral(0.015) NULL YTHDC1 91746 genome.wustl.edu 37 4 69184568 69184568 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001031732.2 -1 validated p.D566V 1.000 109 0% 83 38.6% 20 45% unknown(0) deleterious(0) - NULL UGT2A1 10941 genome.wustl.edu 37 4 70465019 70465019 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006798.2 -1 validated p.P270H 1.000 96 0% 48 37.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase PROL1 58503 genome.wustl.edu 37 4 71275323 71275323 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021225.4 +1 reviewed p.I93S 0.001 211 0% 321 43% 0 - possibly_damaging(0.767) - - NULL AMBN 258 genome.wustl.edu 37 4 71472270 71472270 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016519.4 +1 reviewed p.P389 0.982 23 0% 27 37% 0 - - - - HMMPfam_Amelin,HMMSmart_SM00817 ANKRD17 26057 genome.wustl.edu 37 4 73963901 73963901 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032217.3 -1 reviewed p.N1637S 1.000 195 0% 178 43.8% 6 33.3% benign(0) tolerated(0.36) neutral(0.020) NULL ANKRD17 26057 genome.wustl.edu 37 4 74019637 74019637 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032217.3 -1 reviewed p.N398 1.000 64 0% 92 52.2% 2 100% - - - HMMPfam_Ank,superfamily_Ankyrin repeat ALB 213 genome.wustl.edu 37 4 74280785 74280785 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000477.5 +1 reviewed p.D364E 0.000 206 0% 120 42.5% 0 - benign(0) tolerated(1) - superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103 THAP6 152815 genome.wustl.edu 37 4 76442188 76442188 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144721.4 +1 validated p.Q96R 1.000 116 0% 182 54.9% 0 - benign(0.026) tolerated(0.18) neutral(0.057) NULL G3BP2 9908 genome.wustl.edu 37 4 76584079 76584079 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012297.4 -1 validated p.H42R 1.000 114 0% 164 43.9% 6 33.3% unknown(0) - - HMMPfam_NTF2,superfamily_NTF2-like SHROOM3 57619 genome.wustl.edu 37 4 77661799 77661799 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020859.3 +1 validated p.F825L 0.000 11 0% 40 42.5% 1 0% benign(0) tolerated(1) - NULL CNOT6L 246175 genome.wustl.edu 37 4 78695785 78695785 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000515506 -1 known p.S100P 1.000 77 0% 97 46.4% 1 0% - - - HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like SEC31A 22872 genome.wustl.edu 37 4 83774724 83774724 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001077207.1 -1 reviewed p.Q718R 1.000 92 0% 76 43.4% 23 39.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL HERC6 55008 genome.wustl.edu 37 4 89334369 89334369 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017912.3 +1 validated p.P503 0.991 123 0% 94 36.2% 3 100% - - - NULL ATOH1 474 genome.wustl.edu 37 4 94750106 94750106 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005172.1 +1 reviewed p.W10L 1.000 9 0.000 29 0.586 0 - possibly_damaging(0.643) deleterious(0) deleterious(0.670) NULL C4orf17 84103 genome.wustl.edu 37 4 100451032 100451032 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032149.2 +1 validated p.C155R 0.000 108 0% 88 48.9% 0 - benign(0.31) tolerated(0.24) neutral(0.134) NULL CENPE 1062 genome.wustl.edu 37 4 104053963 104053963 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001813.2 -1 validated p.F2271I 0.984 297 0% 158 38.6% 0 - probably_damaging(0.957) deleterious(0) deleterious(0.845) NULL TET2 54790 genome.wustl.edu 37 4 106157137 106157137 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001127208.1 +1 validated p.R680G 0.001 66 0% 78 56.4% 0 - probably_damaging(0.968) deleterious(0.04) deleterious(0.759) NULL GSTCD 79807 genome.wustl.edu 37 4 106640293 106640293 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001031720.2 +1 validated p.Q168R 0.000 42 0% 38 50% 0 - benign(0.001) tolerated(0.48) neutral(0.011) superfamily_Glutathione S-transferase (GST) C-terminal domain RPL34 6164 genome.wustl.edu 37 4 109546291 109546291 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000995.3 +1 reviewed p.R93C 1.000 156 0% 55 34.5% 8029 45.4% benign(0.011) deleterious(0) neutral(0.445) HMMPfam_Ribosomal_L34e LOC389217 389217 genome.wustl.edu 37 4 110474797 110474797 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_001717714.1 -1 model p.L165I 1.000 11 0% 17 47.1% 0 - - - - HMMPfam_NAP LRIT3 345193 genome.wustl.edu 37 4 110773023 110773023 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198506.2 +1 validated p.L115 0.959 26 0% 36 47.2% 0 - - - - HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like C4orf21 55345 genome.wustl.edu 37 4 113479375 113479375 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000505019 -1 known p.G1684V 0.000 78 0% 164 51.2% 5 40% benign(0.344) tolerated(0.05) neutral(0.454) superfamily_P-loop containing nucleoside triphosphate hydrolases ANK2 287 genome.wustl.edu 37 4 114290684 114290684 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001148.4 +1 reviewed p.G3778E 1.000 14 0.000 8 0.625 0 - probably_damaging(1) - - NULL SEC24D 9871 genome.wustl.edu 37 4 119661885 119661885 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014822.2 -1 reviewed p.D724V 1.000 54 0% 59 37.3% 2 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Sec23_BS,superfamily_beta-sandwich domain of Sec23/24 PDE5A 8654 genome.wustl.edu 37 4 120422387 120422477 + Frame_Shift_Del DEL TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA - novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001083.3 -1 reviewed p.D803fs 1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.995:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like KIAA1109 84162 genome.wustl.edu 37 4 123167408 123167408 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000446180 +1 known p.I286T 0.967 87 1.1% 34 52.9% 0 - - - - NULL KIAA1109 84162 genome.wustl.edu 37 4 123176053 123176053 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000446180 +1 known p.L629P 0.017 93 0% 74 33.8% 0 - - - - NULL FAT4 79633 genome.wustl.edu 37 4 126240054 126240054 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024582.4 +1 validated p.I830V 1.000 48 0% 154 46.1% 0 - possibly_damaging(0.903) deleterious(0.02) deleterious(0.741) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT4 79633 genome.wustl.edu 37 4 126411551 126411551 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024582.4 +1 validated p.L4525P 1.000 37 0% 47 34% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PCDH10 57575 genome.wustl.edu 37 4 134072029 134072029 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032961.1 +1 reviewed p.D245G 1.000 15 0% 62 33.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like SMARCA5 8467 genome.wustl.edu 37 4 144469261 144469261 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003601.2 +1 reviewed p.F985L 1.000 116 0% 79 53.2% 48 47.9% possibly_damaging(0.733) tolerated(0.1) deleterious(0.554) HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_SLIDE FREM3 166752 genome.wustl.edu 37 4 144620167 144620167 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000329798 -1 known p.L554 0.001 20 0% 82 48.8% 0 - - - - NULL OTUD4 54726 genome.wustl.edu 37 4 146071745 146071745 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001102653.1 -1 reviewed p.S328 0.003 183 0.5% 195 42.6% 0 - - - - NULL FAM160A1 729830 genome.wustl.edu 37 4 152571386 152571386 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001109977.1 +1 predicted p.P731 0.000 69 0% 67 47.8% 2 50% - - - NULL LRAT 9227 genome.wustl.edu 37 4 155670149 155670149 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004744.3 +1 reviewed p.V185A 1.000 305 0% 354 41.8% 0 - benign(0.073) tolerated(0.29) neutral(0.034) NULL NPY2R 4887 genome.wustl.edu 37 4 156135096 156135096 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000910.2 +1 provisional p.G2D 1.000 93 0% 172 47.7% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL MAP9 79884 genome.wustl.edu 37 4 156274072 156274072 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001039580.1 -1 validated p.V560 0.999 333 0% 115 35.7% 1 0% - - - NULL ETFDH 2110 genome.wustl.edu 37 4 159618812 159618812 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004453.2 +1 reviewed p.H311Q 0.954 179 0% 147 40.1% 5 60% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_FAD/NAD(P)-binding domain FNIP2 57600 genome.wustl.edu 37 4 159790523 159790523 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020840.1 +1 validated p.L912P 0.000 9 0.000 8 0.625 0 - probably_damaging(0.957) tolerated(0.33) neutral(0.425) NULL NPY1R 4886 genome.wustl.edu 37 4 164247674 164247674 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000909.4 -1 validated p.N11 0.077 241 0% 190 43.2% 0 - - - - superfamily_Family A G protein-coupled receptor-like NPY5R 4889 genome.wustl.edu 37 4 164271441 164271441 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006174.2 +1 provisional p.D6N 0.256 103 0% 135 37.8% 0 - benign(0.002) tolerated(0.05) neutral(0.345) superfamily_SSF81321 TRIM60 166655 genome.wustl.edu 37 4 165961440 165961440 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152620.2 +1 reviewed p.R72 0.000 98 0% 172 44.2% 0 - - - - superfamily_SSF57850 KLHL2 11275 genome.wustl.edu 37 4 166215609 166215609 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007246.3 +1 validated p.S215A 1.000 233 0% 93 41.9% 5 0% benign(0.317) deleterious(0.01) deleterious(0.505) HMMPfam_BACK DDX60 55601 genome.wustl.edu 37 4 169194492 169194492 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017631.5 -1 validated p.S838G 0.001 69 0% 87 33.3% 0 - benign(0) tolerated(0.5) neutral(0.010) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases GALNT7 51809 genome.wustl.edu 37 4 174235157 174235157 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017423.2 +1 reviewed p.F480V 1.000 96 0% 78 34.6% 4 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_Nucleotide-diphospho-sugar transferases FBXO8 26269 genome.wustl.edu 37 4 175160160 175160160 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012180.2 -1 reviewed p.L253I 1.000 100 0% 81 45.7% 12 75% benign(0.129) tolerated(0.05) neutral(0.356) HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain CDKN2AIP 55602 genome.wustl.edu 37 4 184367365 184367365 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017632.2 +1 provisional p.S176 0.001 41 0% 137 43.8% 2 50% - - - NULL TLR3 7098 genome.wustl.edu 37 4 187005015 187005015 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003265.2 +1 reviewed p.F725 0.978 113 0% 98 37.8% 1 0% - - - NULL KLKB1 3818 genome.wustl.edu 37 4 187172790 187172790 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000892.3 +1 reviewed p.C340G 0.998 253 0% 236 39% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1 FAT1 2195 genome.wustl.edu 37 4 187540503 187540503 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005245.3 -1 reviewed p.K2413Q 0.956 47 0% 39 33.3% 0 - benign(0) tolerated(1) - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187542225 187542225 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005245.3 -1 reviewed p.E1839* 1.000 60 0% 53 35.8% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like CCDC127 133957 genome.wustl.edu 37 5 216866 216866 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145265.2 -1 provisional p.P33 0.752 87 0% 207 34.3% 3 66.6% - - - NULL EXOC3 11336 genome.wustl.edu 37 5 447830 447830 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007277.4 +1 reviewed p.L109 0.989 8 0.000 43 0.744 4 75% - - - NULL SLC6A3 6531 genome.wustl.edu 37 5 1416241 1416241 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001044.4 -1 reviewed p.Y335H 1.000 38 0% 163 44.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_SNF C5orf38 153571 genome.wustl.edu 37 5 2755148 2755148 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178569.2 +1 provisional p.R137I 0.005 109 0% 174 49.4% 1 0% unknown(0) - - NULL PAPD7 11044 genome.wustl.edu 37 5 6753066 6753066 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006999.4 +1 reviewed p.S450 0.000 56 0% 205 47.3% 4 50% - - - NULL CTNND2 1501 genome.wustl.edu 37 5 10973663 10973663 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001332.2 -1 validated p.T1194A 1.000 35 0% 60 51.7% 0 - probably_damaging(0.991) deleterious(0.02) deleterious(0.827) NULL ZNF622 90441 genome.wustl.edu 37 5 16465344 16465344 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033414.2 -1 provisional p.P144L 1.000 45 0% 107 52.3% 4 50% probably_damaging(0.997) deleterious(0.04) deleterious(0.815) NULL MYO10 4651 genome.wustl.edu 37 5 16703175 16703175 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012334.2 -1 validated p.K790R 0.006 129 0% 173 28.3% 9 11.1% benign(0.037) tolerated(0.57) neutral(0.008) HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540 CDH9 1007 genome.wustl.edu 37 5 26903828 26903828 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016279.3 -1 reviewed p.S306N 1.000 135 0% 126 42.9% 0 - benign(0.408) tolerated(0.27) neutral(0.166) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin ADAMTS12 81792 genome.wustl.edu 37 5 33577049 33577049 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030955.2 -1 reviewed p.R1028G 0.000 81 0% 102 36.3% 0 - benign(0) tolerated(0.37) neutral(0.019) NULL RXFP3 51289 genome.wustl.edu 37 5 33938067 33938067 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016568.3 +1 validated p.A408T 0.946 5 0.000 25 0.360 0 - benign(0.002) tolerated(0.41) neutral(0.015) superfamily_SSF81321 SPEF2 79925 genome.wustl.edu 37 5 35654804 35654804 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024867.3 +1 validated p.Q318H 0.997 61 0% 43 46.5% 7 57.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SPEF2 79925 genome.wustl.edu 37 5 35806967 35806967 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024867.3 +1 validated p.T1723 0.001 124 0% 58 50% 13 53.8% - - - HMMPfam_hATC LMBRD2 92255 genome.wustl.edu 37 5 36122513 36122513 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001007527.1 -1 validated p.L330R 1.000 115 0% 55 52.7% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_LMBR1 NIPBL 25836 genome.wustl.edu 37 5 36985595 36985595 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133433.3 +1 reviewed p.P771 0.733 49 0% 82 43.9% 0 - - - - superfamily_ARM repeat NIPBL 25836 genome.wustl.edu 37 5 37049388 37049388 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133433.3 +1 reviewed p.L2313 1.000 80 0% 76 44.7% 2 100% - - - superfamily_ARM repeat C5orf42 65250 genome.wustl.edu 37 5 37183342 37183342 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_023073.3 -1 predicted p.L528 0.004 206 0% 143 50.3% 0 - - - - NULL WDR70 55100 genome.wustl.edu 37 5 37722992 37722992 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018034.2 +1 provisional p.K518T 1.000 97 0% 59 35.6% 47 42.5% possibly_damaging(0.83) deleterious(0.01) deleterious(0.721) NULL OSMR 9180 genome.wustl.edu 37 5 38925391 38925391 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003999.2 +1 reviewed p.Y710 0.261 60 0% 47 34% 16 75% - - - HMMSmart_SM00060,superfamily_Fibronectin type III DAB2 1601 genome.wustl.edu 37 5 39376971 39376971 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001343.2 -1 validated p.L640 1.000 45 0% 57 63.2% 7 28.5% - - - NULL FBXO4 26272 genome.wustl.edu 37 5 41941323 41941323 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012176.2 +1 reviewed p.T368 0.652 216 0% 149 36.9% 22 31.8% - - - NULL CCDC152 100129792 genome.wustl.edu 37 5 42762544 42762544 + Splice_Site SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001134848.1 +1 validated e2-1 1.000 145 0% 91 36.3% 0 - - - - - GPBP1 65056 genome.wustl.edu 37 5 56527023 56527023 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001127235.2 +1 validated p.R96C 1.000 105 0% 131 48.9% 19 52.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL KIF2A 3796 genome.wustl.edu 37 5 61643936 61643936 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098511.1 +1 validated p.P74L 1.000 105 0% 104 48.1% 9 44.4% probably_damaging(0.989) tolerated(0.33) neutral(0.464) NULL RGS7BP 401190 genome.wustl.edu 37 5 63803660 63803660 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001029875.1 +1 provisional p.C96 1.000 20 0% 118 44.9% 1 0% - - - NULL CENPK 64105 genome.wustl.edu 37 5 64848335 64848335 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022145.3 -1 validated p.T51 0.730 142 0% 81 34.6% 0 - - - - NULL ERBB2IP 55914 genome.wustl.edu 37 5 65320241 65320241 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018695.2 +1 reviewed p.L260 1.000 118 0% 63 36.5% 0 - - - - HMMPfam_LRR_1,superfamily_SSF52058 ERBB2IP 55914 genome.wustl.edu 37 5 65371029 65371029 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018695.2 +1 reviewed p.R1271G 1.000 43 0% 84 44% 12 8.3% probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_PDZ PIK3R1 5295 genome.wustl.edu 37 5 67584577 67584577 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181524.1 +1 reviewed p.Q5R 1.000 120 0% 237 51.5% 1 100% benign(0.119) tolerated(0.11) neutral(0.281) NULL MARVELD2 153562 genome.wustl.edu 37 5 68728461 68728461 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001038603.2 +1 validated p.P430 0.000 35 0% 55 47.3% 2 50% - - - NULL NSA2 10412 genome.wustl.edu 37 5 74069744 74069744 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014886.3 +1 provisional p.F192L 1.000 106 0% 63 55.6% 312 41.3% benign(0.199) deleterious(0.04) neutral(0.368) HMMPfam_Ribosomal_S8e POC5 134359 genome.wustl.edu 37 5 74990653 74990653 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001099271.1 -1 validated p.N173H 1.000 132 0% 95 36.8% 6 16.6% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL SV2C 22987 genome.wustl.edu 37 5 75427697 75427697 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014979.1 +1 provisional p.Y41C 1.000 98 0% 79 49.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_MFS_gen_substrate_transporter IQGAP2 10788 genome.wustl.edu 37 5 75884742 75884742 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006633.2 +1 validated p.F157S 1.000 125 0% 83 33.7% 0 - benign(0.019) deleterious(0) neutral(0.446) HMMPfam_CH,superfamily_Calponin-homology domain CH-domain AGGF1 55109 genome.wustl.edu 37 5 76342248 76342248 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018046.3 +1 validated p.M316T 1.000 104 0% 167 38.9% 3 0% benign(0.002) tolerated(0.63) neutral(0.004) NULL CMYA5 202333 genome.wustl.edu 37 5 79029280 79029280 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153610.3 +1 validated p.E1564D 0.001 72 0% 39 35.9% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL ZCCHC9 84240 genome.wustl.edu 37 5 80604784 80604784 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001131035.1 +1 validated p.K185N 1.000 199 0% 161 42.2% 14 21.4% benign(0.394) deleterious(0.01) deleterious(0.532) HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains VCAN 1462 genome.wustl.edu 37 5 82815466 82815466 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004385.4 +1 reviewed p.L447 0.216 72 0% 61 60.7% 0 - - - - NULL VCAN 1462 genome.wustl.edu 37 5 82817216 82817216 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004385.4 +1 reviewed p.T1031P 0.003 48 0% 31 35.5% 0 - benign(0.013) tolerated(0.1) neutral(0.287) NULL VCAN 1462 genome.wustl.edu 37 5 82834420 82834420 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004385.4 +1 reviewed p.V1866 0.000 37 0% 45 40% 0 - - - - NULL RASA1 5921 genome.wustl.edu 37 5 86674321 86674323 + In_Frame_Del DEL TTT TTT - novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 TTT TTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002890.1 +1 reviewed p.L819in_frame_del 1.000:0.992:1.000 - - - - - - - - - HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP CCNH 902 genome.wustl.edu 37 5 86703989 86703989 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001239.2 -1 reviewed p.F110S 1.000 82 0% 70 45.7% 12 50% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like GPR98 84059 genome.wustl.edu 37 5 89913724 89913724 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032119.3 +1 reviewed p.D104G 0.998 107 0% 95 41.1% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMSmart_SM00237 GPR98 84059 genome.wustl.edu 37 5 89941819 89941819 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032119.3 +1 reviewed p.L978P 0.439 159 0% 97 40.2% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00237 GPR98 84059 genome.wustl.edu 37 5 89979951 89979951 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032119.3 +1 reviewed p.S2071 0.017 93 0% 60 35% 0 - - - - HMMPfam_Calx-beta,HMMSmart_SM00237 GPR98 84059 genome.wustl.edu 37 5 90004707 90004707 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000509621 +1 known p.L501P 0.973 173 0% 171 41.5% 0 - - - - NULL GPR98 84059 genome.wustl.edu 37 5 90050869 90050869 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032119.3 +1 reviewed p.L3816S 1.000 118 0% 97 44.3% 0 - probably_damaging(0.992) tolerated(0.25) deleterious(0.484) NULL GPR98 84059 genome.wustl.edu 37 5 90149927 90149927 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032119.3 +1 reviewed p.D5835Y 0.456 145 0% 217 50.2% 0 - benign(0.163) tolerated(0.07) neutral(0.334) NULL TTC37 9652 genome.wustl.edu 37 5 94852889 94852889 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014639.2 -1 provisional p.Q751R 0.909 212 0% 67 40.3% 3 66.6% benign(0.174) tolerated(0.4) neutral(0.032) superfamily_Prenyl_trans TTC37 9652 genome.wustl.edu 37 5 94864790 94864790 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014639.2 -1 provisional p.P303 0.964 56 0% 78 42.3% 2 0% - - - HMMSmart_TPR,superfamily_SSF48452 ERAP1 51752 genome.wustl.edu 37 5 96139605 96139605 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016442.3 -1 validated p.S9A 0.023 41 0% 94 46.8% 1 0% benign(0.002) tolerated(0.89) - NULL RIOK2 55781 genome.wustl.edu 37 5 96503536 96503536 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018343.2 -1 validated p.K344 0.001 74 0% 42 54.8% 8 37.5% - - - NULL CHD1 1105 genome.wustl.edu 37 5 98192207 98192207 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001270.2 -1 reviewed p.A1670 1.000 103 0% 93 46.2% 10 40% - - - NULL SLCO4C1 353189 genome.wustl.edu 37 5 101597657 101597657 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_180991.4 -1 validated p.S327Y 1.000 159 0.6% 101 40.6% 0 - probably_damaging(0.953) deleterious(0.04) deleterious(0.746) HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter SLCO6A1 133482 genome.wustl.edu 37 5 101735323 101735323 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173488.3 -1 validated p.F584L 0.021 166 0% 69 50.7% 0 - possibly_damaging(0.765) tolerated(0.19) neutral(0.333) HMMPfam_OATP,superfamily_MFS general substrate transporter PPIP5K2 23262 genome.wustl.edu 37 5 102522058 102522058 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015216.2 +1 provisional p.L1069 1.000 44 0% 52 44.2% 0 - - - - NULL NREP 9315 genome.wustl.edu 37 5 111311066 111311066 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142475.1 -1 validated p.E14* 0.000 99 0% 177 45.2% 0 - - - - NULL APC 324 genome.wustl.edu 37 5 112173624 112173624 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000038.4 +1 reviewed p.N778S 1.000 47 0% 43 48.8% 0 - possibly_damaging(0.533) tolerated(0.07) deleterious(0.499) NULL TMED7 51014 genome.wustl.edu 37 5 114952081 114952081 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181836.5 -1 validated p.H167R 1.000 74 0% 84 42.9% 3 66.6% probably_damaging(0.982) tolerated(0.12) deleterious(0.687) HMMPfam_EMP24_GP25L CDO1 1036 genome.wustl.edu 37 5 115142133 115142133 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001801.2 -1 validated p.D162 0.000 176 0% 161 44.1% 0 - - - - HMMPfam_CDO_I ZNF608 57507 genome.wustl.edu 37 5 123983535 123983535 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020747.2 -1 validated p.D848Y 1.000 38 0% 135 43% 2 100% possibly_damaging(0.901) deleterious(0) deleterious(0.801) NULL LMNB1 4001 genome.wustl.edu 37 5 126161746 126161746 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005573.2 +1 reviewed p.S520P 1.000 49 0% 59 52.5% 10 50% benign(0.387) deleterious(0) deleterious(0.569) HMMPfam_IF_tail,superfamily_Lamin A/C globular tail domain CTXN3 613212 genome.wustl.edu 37 5 126993302 126993302 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001048252.2 +1 validated p.T30K 0.997 80 0% 40 32.5% 0 - probably_damaging(0.989) tolerated(0.1) deleterious(0.726) NULL FBN2 2201 genome.wustl.edu 37 5 127714517 127714517 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001999.3 -1 reviewed p.Y557C 1.000 51 0% 28 50% 0 - possibly_damaging(0.903) tolerated(0.18) neutral(0.414) PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin RAPGEF6 51735 genome.wustl.edu 37 5 130771776 130771776 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000308008 -1 known p.K1348 1.000 339 0% 311 45.7% 0 - - - - NULL FNIP1 96459 genome.wustl.edu 37 5 131006245 131006245 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133372.2 -1 validated p.S1007T 0.996 47 0% 60 50% 0 - benign(0.001) tolerated(0.85) neutral(0.001) NULL RAD50 10111 genome.wustl.edu 37 5 131939633 131939633 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005732.3 +1 reviewed p.R807 1.000 80 0% 45 48.9% 2 50% - - - HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF3A 11127 genome.wustl.edu 37 5 132039168 132039168 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007054.5 -1 validated p.L458I 1.000 321 0% 216 42.6% 0 - probably_damaging(0.986) tolerated(0.16) deleterious(0.494) NULL SAR1B 51128 genome.wustl.edu 37 5 133948404 133948404 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001033503.2 -1 reviewed p.F74C 1.000 29 0% 48 41.7% 29 31% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SAR,HMMPfam_Arf,superfamily_SSF52540 DDX46 9879 genome.wustl.edu 37 5 134113268 134113268 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014829.2 +1 reviewed p.D206 1.000 210 0% 155 41.9% 20 45% - - - NULL H2AFY 9555 genome.wustl.edu 37 5 134705209 134705209 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138610.2 -1 reviewed p.G122R 1.000 77 0% 123 39.8% 51 37.2% probably_damaging(0.996) tolerated(0.16) deleterious(0.521) superfamily_Histone-fold KDM3B 51780 genome.wustl.edu 37 5 137726894 137726894 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016604.3 +1 validated p.L525 1.000 171 0% 119 49.6% 2 0% - - - NULL CTNNA1 1495 genome.wustl.edu 37 5 138261077 138261077 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001903.2 +1 validated p.K627R 1.000 25 0% 57 42.1% 64 39% benign(0) tolerated(1) - HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin ANKHD1-EIF4EBP3 404734 genome.wustl.edu 37 5 139889375 139889375 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020690.4 +1 reviewed p.F1307V 1.000 75 0% 59 35.6% 14 57.1% possibly_damaging(0.67) tolerated(0.62) neutral(0.241) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK SRA1 10011 genome.wustl.edu 37 5 139931572 139931572 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001035235.2 -1 reviewed p.T129A 0.582 23 0% 87 39.1% 114 45.6% benign(0.021) tolerated(0.19) neutral(0.051) HMMPfam_SRA1 SLC35A4 113829 genome.wustl.edu 37 5 139947202 139947202 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_080670.2 +1 provisional p.M150L 0.970 17 0% 46 28.3% 13 38.4% benign(0.011) tolerated(0.75) neutral(0.002) HMMPfam_Nuc_sug_transp,superfamily_SSF103481 PCDHA9 9752 genome.wustl.edu 37 5 140229335 140229335 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031857.1 +1 reviewed p.S419P 0.000 23 0% 109 48.6% 0 - benign(0.001) tolerated(0.22) neutral(0.042) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA13 56136 genome.wustl.edu 37 5 140263889 140263889 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018904.2 +1 reviewed p.S679L 0.000 4 0.000 32 0.469 0 - benign(0.004) tolerated(0.26) neutral(0.034) NULL PCDHB7 56129 genome.wustl.edu 37 5 140554680 140554680 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018940.2 +1 reviewed p.G755V 0.218 29 0% 202 44.1% 0 - possibly_damaging(0.937) deleterious(0.01) deleterious(0.788) NULL PCDHB8 56128 genome.wustl.edu 37 5 140558805 140558805 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019120.2 +1 reviewed p.S397Y 0.044 54 0% 156 39.1% 0 - possibly_damaging(0.472) deleterious(0) deleterious(0.601) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB8 56128 genome.wustl.edu 37 5 140559237 140559237 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019120.2 +1 reviewed p.A541D 0.941 19 0% 105 42.9% 0 - possibly_damaging(0.952) deleterious(0.01) deleterious(0.801) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHGA5 56110 genome.wustl.edu 37 5 140744010 140744010 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018918.2 +1 reviewed p.E38G 1.000 20 0% 90 46.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGB3 56102 genome.wustl.edu 37 5 140752382 140752382 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032097.1 +1 reviewed p.S807 0.962 92 0% 180 38.9% 0 - - - - NULL PCDHGB5 56101 genome.wustl.edu 37 5 140779998 140779998 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018925.2 +1 reviewed p.Q768 0.000 206 0% 566 41% 0 - - - - NULL PCDHGC5 56097 genome.wustl.edu 37 5 140869908 140869908 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018929.2 +1 reviewed p.T367 0.393 65 0% 275 39.3% 0 - - - - HMMPfam_Cadherin,superfamily_Cadherin-like ARAP3 64411 genome.wustl.edu 37 5 141034936 141034936 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022481.5 -1 reviewed p.M1381T 1.000 23 0% 62 58.1% 51 45% probably_damaging(0.959) deleterious(0.01) deleterious(0.808) NULL ARAP3 64411 genome.wustl.edu 37 5 141038026 141038026 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022481.5 -1 reviewed p.A1144 0.698 51 0% 189 43.9% 47 55.3% - - - HMMPfam_RA NDFIP1 80762 genome.wustl.edu 37 5 141511805 141511805 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030571.3 +1 reviewed p.G60 0.998 83 0% 98 49% 29 51.7% - - - HMMPfam_DUF2370 LARS 51520 genome.wustl.edu 37 5 145493761 145493761 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020117.9 -1 reviewed p.F1147L 1.000 51 0% 48 43.8% 138 44.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PCYOX1L 78991 genome.wustl.edu 37 5 148743721 148743721 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024028.3 +1 validated p.S140R 1.000 67 0% 298 40.9% 3 33.3% probably_damaging(0.997) tolerated(0.1) deleterious(0.752) HMMPfam_Prenylcys_lyase,superfamily_FAD/NAD(P)-binding domain ARHGEF37 389337 genome.wustl.edu 37 5 149011705 149011705 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001001669.2 +1 validated p.L660S 1.000 48 0% 94 44.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 FAT2 2196 genome.wustl.edu 37 5 150946578 150946578 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001447.2 -1 reviewed p.K639E 0.514 154 0% 99 46.5% 0 - possibly_damaging(0.442) deleterious(0.03) deleterious(0.509) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like LARP1 23367 genome.wustl.edu 37 5 154169883 154169883 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015315.3 +1 validated e2-2 1.000 31 0% 86 36% 0 - - - - - LARP1 23367 genome.wustl.edu 37 5 154183836 154183836 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015315.3 +1 validated p.R762C 0.999 31 0% 80 42.5% 12 58.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL HAVCR2 84868 genome.wustl.edu 37 5 156533846 156533846 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032782.3 -1 validated p.E62 0.000 44 0% 50 38% 0 - - - - HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin FAM71B 153745 genome.wustl.edu 37 5 156590216 156590216 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_130899.2 -1 validated p.E354* 0.000 25 0% 30 53.3% 0 - - - - NULL C1QTNF2 114898 genome.wustl.edu 37 5 159776297 159776297 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031908.4 -1 validated p.E291K 1.000 29 0% 68 52.9% 1 0% possibly_damaging(0.938) tolerated(0.13) deleterious(0.636) HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like MAT2B 27430 genome.wustl.edu 37 5 162943750 162943750 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000421814 +1 known p.E251 0.000 48 0% 60 45% 0 - - - - HMMPfam_RmlD_sub_bind RARS 5917 genome.wustl.edu 37 5 167919668 167919668 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002887.3 +1 reviewed p.L62P 1.000 107 0% 80 41.2% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain SLIT3 6586 genome.wustl.edu 37 5 168134982 168134982 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003062.2 -1 validated p.K948R 1.000 8 0.000 18 0.333 1 0% probably_damaging(0.998) tolerated(0.31) deleterious(0.501) HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin DOCK2 1794 genome.wustl.edu 37 5 169506071 169506071 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004946.2 +1 validated p.R1696L 0.999 43 0% 51 43.1% 1 0% probably_damaging(0.98) deleterious(0.01) deleterious(0.830) NULL MSX2 4488 genome.wustl.edu 37 5 174156441 174156441 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002449.4 +1 reviewed p.F220S 1.000 22 0% 87 51.7% 69 43.4% possibly_damaging(0.694) tolerated(0.09) deleterious(0.545) NULL UIMC1 51720 genome.wustl.edu 37 5 176395953 176395953 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016290.3 -1 provisional p.Q268R 0.993 33 0% 105 42.9% 1 100% benign(0.133) tolerated(0.17) neutral(0.070) NULL NSD1 64324 genome.wustl.edu 37 5 176687066 176687066 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022455.4 +1 reviewed p.I1681 0.990 58 0% 138 39.1% 0 - - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger RAB24 53917 genome.wustl.edu 37 5 176728799 176728799 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001031677.2 -1 validated p.G186D 1.000 18 0% 121 43% 221 45.2% possibly_damaging(0.849) deleterious(0) deleterious(0.770) NULL SLC34A1 6569 genome.wustl.edu 37 5 176824910 176824910 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003052.4 +1 reviewed p.A515T 0.999 19 0% 95 48.4% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Na_Pi_cotrans ZFP2 80108 genome.wustl.edu 37 5 178358543 178358543 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030613.2 +1 provisional p.N77D 0.001 87 0% 82 54.9% 2 0% benign(0.049) tolerated(0.29) neutral(0.032) NULL GRM6 2916 genome.wustl.edu 37 5 178419154 178419154 + Silent SNP G G C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000319065 -1 known p.G93 0.005 14 0% 20 35% 0 - - - - HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I ZNF879 345462 genome.wustl.edu 37 5 178459787 178459787 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136116.1 +1 provisional p.R280G 1.000 54 0% 70 48.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers BTNL3 10917 genome.wustl.edu 37 5 180432438 180432438 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_197975.1 +1 validated p.K323E 0.150 110 0% 99 63.6% 0 - possibly_damaging(0.902) tolerated(1) neutral(0.357) HMMSmart_PRY TRIM41 90933 genome.wustl.edu 37 5 180659802 180659802 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000503114 +1 known p.V332A 1.000 7 0.000 37 0.568 4 0% - - - NULL SERPINB9 5272 genome.wustl.edu 37 6 2890602 2890602 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004155.4 -1 validated p.L309P 1.000 68 0% 66 50% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin FAM50B 26240 genome.wustl.edu 37 6 3850586 3850586 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012135.1 +1 provisional p.K181E 0.999 6 0.000 13 0.462 8 75% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_XAP5 FAM50B 26240 genome.wustl.edu 37 6 3850879 3850879 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012135.1 +1 provisional p.S278 1.000 16 0% 38 44.7% 12 0% - - - HMMPfam_XAP5 PRPF4B 8899 genome.wustl.edu 37 6 4032619 4032619 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003913.4 +1 reviewed p.K290E 1.000 69 0% 51 54.9% 0 - probably_damaging(0.985) tolerated(0.16) deleterious(0.491) NULL PRPF4B 8899 genome.wustl.edu 37 6 4052327 4052327 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003913.4 +1 reviewed p.S771G 1.000 73 0% 106 38.7% 1 100% unknown(0) deleterious(0.01) - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase GCM2 9247 genome.wustl.edu 37 6 10876230 10876230 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004752.3 -1 reviewed p.H159R 1.000 191 0% 234 41.9% 0 - probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_GCM,superfamily_GCM_motif LOC221710 221710 genome.wustl.edu 37 6 11134758 11134758 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001135575.1 +1 validated p.S67P 0.002 146 0% 49 44.9% 7 28.5% benign(0.278) - - NULL HIVEP1 3096 genome.wustl.edu 37 6 12124532 12124532 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002114.2 +1 validated p.N1502D 0.000 76 0% 72 43.1% 0 - benign(0) tolerated(0.66) neutral(0.003) NULL GFOD1 54438 genome.wustl.edu 37 6 13470128 13470128 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033069.2 -1 predicted p.M129L 0.000 235 0% 114 43.9% 0 - unknown(0) - - NULL DTNBP1 84062 genome.wustl.edu 37 6 15638032 15638032 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032122.3 -1 reviewed p.Y55 1.000 55 0% 86 45.3% 7 57.1% - - - NULL KIF13A 63971 genome.wustl.edu 37 6 17873612 17873612 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022113.4 -1 validated p.Y72 1.000 161 0% 162 43.8% 0 - - - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases ENSG00000200681 0 genome.wustl.edu 37 6 18307268 18307268 + RNA SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000363811 -1 novel NULL 0.437 133 0% 99 45.5% 0 - - - - - MBOAT1 154141 genome.wustl.edu 37 6 20144532 20144532 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080480.1 -1 provisional p.V113A 1.000 136 0% 103 42.7% 6 66.6% benign(0.014) tolerated(0.26) neutral(0.035) NULL CDKAL1 54901 genome.wustl.edu 37 6 20546588 20546588 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017774.3 +1 reviewed p.S3P 1.000 107 0% 104 44.2% 2 0% benign(0.001) deleterious(0.03) neutral(0.364) NULL KIAA0319 9856 genome.wustl.edu 37 6 24564457 24564457 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014809.3 -1 reviewed p.D802N 0.994 10 0% 17 47.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00089,superfamily_PKD domain ACOT13 55856 genome.wustl.edu 37 6 24701831 24701831 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018473.3 +1 reviewed p.H137 1.000 148 0% 127 30.7% 158 56.9% - - - superfamily_Thioesterase/thiol ester dehydrase-isomerase HIST1H2BF 8343 genome.wustl.edu 37 6 26199855 26199855 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003522.3 +1 reviewed p.Q23 1.000 43 0% 142 40.1% 0 - - - - superfamily_Histone-fold POM121L2 94026 genome.wustl.edu 37 6 27278260 27278260 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000444565 -1 known p.S564P 0.007 62 0% 84 41.7% 0 - benign(0.004) tolerated(0.13) neutral(0.253) NULL HIST1H3J 8356 genome.wustl.edu 37 6 27858425 27858425 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003535.2 -1 reviewed p.L49S 1.000 7 0.000 25 0.560 0 - probably_damaging(1) - - HMMSmart_SM00428,superfamily_Histone-fold GPX5 2880 genome.wustl.edu 37 6 28501822 28501822 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001509.2 +1 reviewed p.N182D 1.000 65 0% 60 38.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Thiordxn-like_fd TRIM31 11074 genome.wustl.edu 37 6 30079484 30079484 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007028.3 -1 reviewed p.K152Q 0.369 197 0% 317 47% 2 100% possibly_damaging(0.88) tolerated(0.14) deleterious(0.593) NULL ABCF1 23 genome.wustl.edu 37 6 30554058 30554058 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001025091.1 +1 reviewed p.S621R 1.000 14 0% 35 34.3% 11 45.4% possibly_damaging(0.598) deleterious(0.05) deleterious(0.552) NULL ATF6B 1388 genome.wustl.edu 37 6 32084593 32084593 + Splice_Site SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004381.4 -1 reviewed e16-1 1.000 28 0% 99 48.5% 1 100% - - - - ITPR3 3710 genome.wustl.edu 37 6 33653552 33653552 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002224.2 +1 validated p.P1872L 1.000 8 0.000 32 0.438 14 64.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_RIH_assoc LEMD2 221496 genome.wustl.edu 37 6 33746088 33746088 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181336.3 -1 validated p.M363V 1.000 24 0% 93 38.7% 25 52% benign(0.081) deleterious(0.02) neutral(0.389) NULL GRM4 2914 genome.wustl.edu 37 6 34004123 34004123 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000841.1 -1 reviewed p.A588 0.067 4 0.000 27 0.444 0 - - - - NULL ANKS1A 23294 genome.wustl.edu 37 6 35047375 35047375 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015245.2 +1 validated p.H789R 0.998 26 0% 75 52% 1 0% possibly_damaging(0.553) tolerated(0.24) neutral(0.226) HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology RPL10A 4736 genome.wustl.edu 37 6 35438049 35438049 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007104.4 +1 reviewed p.P135L 1.000 37 0% 88 43.2% 2323 47% benign(0.195) deleterious(0.05) neutral(0.364) HMMPfam_Ribosomal_L1,PatternScan_RIBOSOMAL_L1,superfamily_Ribosomal protein L1 PNPLA1 285848 genome.wustl.edu 37 6 36259299 36259299 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145716.1 +1 validated p.S41 0.268 17 0% 70 44.3% 0 - - - - HMMPfam_Patatin MTCH1 23787 genome.wustl.edu 37 6 36938237 36938237 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014341.1 -1 provisional p.M306V 1.000 15 0% 45 42.2% 70 48.5% benign(0) tolerated(0.43) neutral(0.013) superfamily_Mitochondrial carrier TMEM217 221468 genome.wustl.edu 37 6 37186319 37186319 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145316.3 -1 validated p.I163T 0.000 82 0% 90 42.2% 0 - benign(0.031) tolerated(0.06) neutral(0.324) NULL CCDC167 154467 genome.wustl.edu 37 6 37452636 37452636 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138493.2 -1 validated p.R47K 0.965 34 0% 95 53.7% 57 31.5% benign(0) tolerated(0.98) - NULL MDGA1 266727 genome.wustl.edu 37 6 37605869 37605869 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000505425 -1 known p.L963P 0.000 27 0% 85 47.1% 0 - unknown(0) tolerated(0.15) - NULL DNAH8 1769 genome.wustl.edu 37 6 38890885 38890885 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001371.2 +1 validated p.T3355A 0.001 40 0% 35 71.4% 0 - benign(0.01) tolerated(1) neutral(0.001) NULL DAAM2 23500 genome.wustl.edu 37 6 39835441 39835441 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015345.2 +1 validated p.L195P 1.000 12 0% 28 25% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Drf_GBD LRFN2 57497 genome.wustl.edu 37 6 40400660 40400660 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020737.1 -1 provisional p.I65V 1.000 10 0% 20 30% 0 - benign(0) tolerated(0.99) - superfamily_L domain-like TREML2 79865 genome.wustl.edu 37 6 41162432 41162432 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024807.2 -1 validated p.L172 0.000 29 0% 150 42.7% 0 - - - - NULL TREML4 285852 genome.wustl.edu 37 6 41197400 41197400 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000358696 +1 known p.C163R 0.002 31 0% 47 40.4% 0 - - - - NULL FOXP4 116113 genome.wustl.edu 37 6 41552534 41552534 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001012426.1 +1 reviewed p.P110S 1.000 9 0.000 40 0.550 5 40% probably_damaging(0.98) deleterious(0.01) deleterious(0.830) NULL CUL7 9820 genome.wustl.edu 37 6 43011323 43011323 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014780.4 -1 reviewed p.L1073P 1.000 5 0.000 14 0.357 9 55.5% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL CUL7 9820 genome.wustl.edu 37 6 43014723 43014723 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014780.4 -1 reviewed p.G764 0.255 27 0% 72 40.3% 4 100% - - - NULL NFKBIE 4794 genome.wustl.edu 37 6 44230331 44230331 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004556.2 -1 validated p.Q284R 1.000 17 0% 105 56.2% 7 0% possibly_damaging(0.584) tolerated(0.16) neutral(0.261) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK CDC5L 988 genome.wustl.edu 37 6 44358050 44358050 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001253.2 +1 reviewed p.W31R 1.000 221 0% 282 39% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding CDC5L 988 genome.wustl.edu 37 6 44397637 44397637 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001253.2 +1 reviewed p.K694M 1.000 67 0% 57 43.9% 17 41.1% benign(0.29) tolerated(0.12) neutral(0.350) NULL TDRD6 221400 genome.wustl.edu 37 6 46657394 46657394 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001010870.2 +1 validated p.N510S 0.001 61 0% 151 47% 0 - benign(0.001) tolerated(0.51) neutral(0.009) HMMPfam_TUDOR TDRD6 221400 genome.wustl.edu 37 6 46659036 46659036 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001010870.2 +1 validated p.K1057 0.995 93 0% 165 45.5% 0 - - - - HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748 GPR116 221395 genome.wustl.edu 37 6 46834771 46834771 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098518.1 -1 validated p.P575 0.216 101 0% 86 47.7% 0 - - - - NULL GPR115 221393 genome.wustl.edu 37 6 47681542 47681542 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153838.3 +1 validated p.S187 0.000 33 0% 35 54.3% 0 - - - - NULL MUT 4594 genome.wustl.edu 37 6 49425413 49425413 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000255.3 -1 reviewed p.Y248 0.994 108 0% 79 40.5% 5 60% - - - HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes LOC647163 647163 genome.wustl.edu 37 6 52268209 52268209 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_001725956.2 -1 model p.E17* 1.000 17 0% 67 41.8% 0 - benign(0.027) tolerated(0.47) neutral(0.012) NULL MLIP 90523 genome.wustl.edu 37 6 54034342 54034342 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138569.2 +1 validated p.P304Q 1.000 232 0% 88 47.7% 0 - benign(0) deleterious(0.04) neutral(0.349) NULL DST 667 genome.wustl.edu 37 6 56328521 56328521 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015548.4 -1 reviewed p.L4954 0.911 29 0% 52 50% 5 20% - - - NULL DST 667 genome.wustl.edu 37 6 56458981 56458981 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015548.4 -1 reviewed p.E1446A 1.000 34 0% 27 44.4% 0 - benign(0.089) - - NULL DST 667 genome.wustl.edu 37 6 56463430 56463430 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015548.4 -1 reviewed p.E1301D 1.000 249 0% 86 39.5% 1 100% possibly_damaging(0.796) - - HMMSmart_SM00150,superfamily_Spectrin repeat DST 667 genome.wustl.edu 37 6 56489961 56489961 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015548.4 -1 reviewed p.I1071 0.993 176 0% 195 42.6% 0 - - - - HMMSmart_SM00150,superfamily_Spectrin repeat KIAA1586 57691 genome.wustl.edu 37 6 56918938 56918938 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020931.2 +1 validated p.S547 0.995 79 0% 74 36.5% 0 - - - - NULL ZNF451 26036 genome.wustl.edu 37 6 57015654 57015654 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001031623.2 +1 validated p.F916I 1.000 141 0% 80 47.5% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRIM2 5558 genome.wustl.edu 37 6 57246834 57246834 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000425433 +1 known p.P187 1.000 309 0% 217 26.7% 2 50% - - - HMMPfam_DNA_primase_lrg PHF3 23469 genome.wustl.edu 37 6 64421206 64421206 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000505138 +1 known p.L104R 1.000 107 0% 75 48% 7 57.1% - - - HMMPfam_SPOC COL19A1 1310 genome.wustl.edu 37 6 70900040 70900040 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001858.4 +1 reviewed p.E1017* 1.000 347 0% 118 42.4% 0 - - - - NULL FAM135A 57579 genome.wustl.edu 37 6 71190664 71190664 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001105531.2 +1 validated p.D201E 1.000 167 0% 84 44% 1 0% benign(0.1) tolerated(0.84) neutral(0.008) NULL FAM135A 57579 genome.wustl.edu 37 6 71237993 71237993 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001105531.2 +1 validated e13-2 1.000 130 0% 80 50% 0 - - - - - SMAP1 60682 genome.wustl.edu 37 6 71567931 71567931 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001044305.1 +1 reviewed p.Q423R 1.000 12 0% 27 37% 7 28.5% possibly_damaging(0.902) deleterious(0) deleterious(0.801) NULL B3GAT2 135152 genome.wustl.edu 37 6 71571416 71571416 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_080742.2 -1 reviewed p.L308I 1.000 120 0% 81 44.4% 28 25% probably_damaging(0.96) deleterious(0.04) deleterious(0.752) superfamily_Nucleotide-diphospho-sugar transferases COL12A1 1303 genome.wustl.edu 37 6 75827141 75827141 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004370.5 -1 reviewed p.I2492 0.128 106 0% 54 46.3% 0 - - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like FILIP1 27145 genome.wustl.edu 37 6 76024555 76024555 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015687.2 -1 validated p.L331 0.987 287 0% 160 40% 0 - - - - HMMPfam_CortBP2 MYO6 4646 genome.wustl.edu 37 6 76532568 76532568 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004999.3 +1 reviewed p.C63R 1.000 229 0.4% 74 43.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases IMPG1 3617 genome.wustl.edu 37 6 76782178 76782178 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001563.2 -1 provisional p.F10I 0.672 253 0% 100 37% 0 - benign(0.011) deleterious(0.04) neutral(0.349) NULL PHIP 55023 genome.wustl.edu 37 6 79655035 79655035 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017934.5 -1 validated p.S1604P 0.865 270 0% 138 43.5% 3 33.3% benign(0) tolerated(0.83) neutral(0.001) NULL DOPEY1 23033 genome.wustl.edu 37 6 83847765 83847765 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015018.2 +1 validated p.Y1335C 1.000 86 0% 59 42.4% 0 - probably_damaging(1) tolerated(0.15) deleterious(0.741) NULL RIPPLY2 134701 genome.wustl.edu 37 6 84566959 84566959 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001009994.1 +1 provisional e4-2 1.000 98 0% 171 45% 0 - - - - - KIAA1009 22832 genome.wustl.edu 37 6 84884490 84884490 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014895.2 -1 validated p.E661* 1.000 285 0% 120 37.5% 0 - - - - NULL KIAA1009 22832 genome.wustl.edu 37 6 84904689 84904689 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014895.2 -1 validated p.N314D 0.000 419 0% 475 42.9% 0 - benign(0.153) tolerated(0.08) neutral(0.314) NULL LOC100289483 100289483 genome.wustl.edu 37 6 86351149 86351149 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002342647.1 +1 model p.C21R 1.000 145 0% 202 44.1% 13 61.5% - - - NULL ORC3 23595 genome.wustl.edu 37 6 88344575 88344575 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181837.1 +1 reviewed p.L400I 0.658 216 0% 126 42.9% 4 100% benign(0.189) tolerated(0.18) neutral(0.074) NULL RNGTT 8732 genome.wustl.edu 37 6 89479568 89479568 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003800.3 -1 validated p.D455A 1.000 259 0% 80 41.2% 2 100% benign(0.03) tolerated(0.21) neutral(0.045) HMMPfam_mRNA_cap_enzyme,superfamily_DNA ligase/mRNA capping enzyme catalytic domain MDN1 23195 genome.wustl.edu 37 6 90382011 90382011 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014611.1 -1 provisional p.T4568A 0.996 42 0% 77 46.8% 1 0% benign(0) tolerated(0.59) neutral(0.004) NULL MAP3K7 6885 genome.wustl.edu 37 6 91257010 91257010 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145331.1 -1 reviewed p.S393P 1.000 88 0% 139 40.3% 7 42.8% probably_damaging(0.969) deleterious(0.03) deleterious(0.776) NULL SIM1 6492 genome.wustl.edu 37 6 100838931 100838931 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005068.2 -1 reviewed p.S536Y 1.000 40 0% 64 43.8% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_SIM_C LIN28B 389421 genome.wustl.edu 37 6 105526633 105526633 + Nonsense_Mutation SNP C C G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004317.2 +1 provisional p.S243* 0.991 59 0% 24 41.7% 0 - - - - NULL BVES 11149 genome.wustl.edu 37 6 105577343 105577343 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007073.3 -1 reviewed p.R88* 1.000 52 0% 103 40.8% 0 - - - - NULL AKD1 221264 genome.wustl.edu 37 6 109863339 109863339 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000424296 -1 known p.V166 0.977 337 0% 155 47.7% 0 - - - - superfamily_SSF52540 SLC22A16 85413 genome.wustl.edu 37 6 110757086 110757086 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033125.2 -1 provisional p.Y464H 0.998 77 0% 88 43.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MFS_1,superfamily_MFS general substrate transporter SLC16A10 117247 genome.wustl.edu 37 6 111498515 111498515 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018593.4 +1 validated p.K197Q 1.000 65 0% 107 44.9% 0 - possibly_damaging(0.752) deleterious(0.02) deleterious(0.659) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter TSPYL4 23270 genome.wustl.edu 37 6 116574636 116574636 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021648.4 -1 validated p.V179A 0.000 32 0% 106 50% 4 75% benign(0.005) tolerated(0.94) - NULL FAM26E 254228 genome.wustl.edu 37 6 116836906 116836906 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153711.2 +1 validated p.N228K 0.000 113 0% 91 41.8% 0 - benign(0.004) tolerated(0.3) neutral(0.029) NULL MAN1A1 4121 genome.wustl.edu 37 6 119628150 119628150 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005907.2 -1 reviewed p.K204R 1.000 210 0% 119 47.1% 0 - benign(0.021) tolerated(0.42) neutral(0.015) HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47 SERINC1 57515 genome.wustl.edu 37 6 122775014 122775014 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020755.2 -1 provisional p.I164V 1.000 102 0% 80 42.5% 3 0% benign(0.333) deleterious(0) deleterious(0.549) HMMPfam_Serinc CLVS2 134829 genome.wustl.edu 37 6 123319050 123319050 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001010852.2 +1 provisional p.D43A 1.000 35 0% 156 43.6% 0 - probably_damaging(1) tolerated(0.2) deleterious(0.549) HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain HINT3 135114 genome.wustl.edu 37 6 126298820 126298820 + Nonstop_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138571.4 +1 validated p.*183R 1.000 177 0% 76 38.2% 2 50% - - - NULL THEMIS 387357 genome.wustl.edu 37 6 128040909 128040909 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001010923.2 -1 reviewed p.K606 0.031 203 0% 107 45.8% 0 - - - - NULL L3MBTL3 84456 genome.wustl.edu 37 6 130387503 130387503 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032438.1 +1 validated p.C290 1.000 66 0% 45 40% 4 100% - - - HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT EPB41L2 2037 genome.wustl.edu 37 6 131229989 131229989 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001431.3 -1 validated p.P275 0.973 169 0% 83 12% 2 50% - - - HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_B41,superfamily_SSF54236 STX7 8417 genome.wustl.edu 37 6 132789610 132789610 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003569.2 -1 validated p.D181G 1.000 267 0% 123 37.4% 7 14.2% probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins HBS1L 10767 genome.wustl.edu 37 6 135286419 135286419 + Nonstop_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006620.3 -1 reviewed p.*685G 1.000 150 0% 71 45.1% 28 35.7% - - - NULL REPS1 85021 genome.wustl.edu 37 6 139241431 139241431 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000415951 -1 known p.I168V 0.887 354 0% 181 38.1% 3 33.3% - - - NULL NMBR 4829 genome.wustl.edu 37 6 142396996 142396996 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002511.2 -1 validated p.P321Q 1.000 58 0% 45 35.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 GPR126 57211 genome.wustl.edu 37 6 142689047 142689047 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198569.2 +1 reviewed p.V149F 1.000 51 0% 51 41.2% 0 - probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMSmart_CUB,superfamily_CUB HIVEP2 3097 genome.wustl.edu 37 6 143091489 143091489 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006734.3 -1 provisional p.E1463* 1.000 153 0% 243 44.9% 3 66.6% - - - NULL HIVEP2 3097 genome.wustl.edu 37 6 143095185 143095185 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006734.3 -1 provisional p.N231H 1.000 50 0% 105 41.9% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 LTV1 84946 genome.wustl.edu 37 6 144178922 144178922 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032860.3 +1 provisional p.E191 1.000 107 0% 88 40.9% 13 38.4% - - - HMMPfam_LTV UTRN 7402 genome.wustl.edu 37 6 144837436 144837436 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007124.2 +1 reviewed p.F1772L 0.938 106 0% 40 32.5% 3 100% benign(0) tolerated(1) - NULL UTRN 7402 genome.wustl.edu 37 6 145093051 145093051 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007124.2 +1 reviewed p.T2835K 1.000 51 0% 51 45.1% 2 50% possibly_damaging(0.715) deleterious(0.04) deleterious(0.608) HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP RAET1L 154064 genome.wustl.edu 37 6 150342213 150342213 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_130900.2 -1 validated p.S153 0.001 265 0% 400 47.2% 0 - - - - HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog MTHFD1L 25902 genome.wustl.edu 37 6 151358233 151358233 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015440.3 +1 validated p.I943V 1.000 44 0% 45 37.8% 37 40.5% possibly_damaging(0.734) tolerated(0.3) neutral(0.297) HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases RMND1 55005 genome.wustl.edu 37 6 151766483 151766483 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017909.2 -1 validated p.Q155R 1.000 93 0% 161 41% 8 62.5% benign(0.23) deleterious(0.03) neutral(0.388) NULL SYNE1 23345 genome.wustl.edu 37 6 152629695 152629696 + Frame_Shift_Del DEL TG TG - novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 TG TG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182961.2 -1 reviewed p.H5758fs 1.000:1.000 - - - - - - - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152652073 152652073 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182961.2 -1 reviewed p.I4583V 1.000 277 0% 161 41% 0 - possibly_damaging(0.868) - - HMMSmart_SM00150,superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152652486 152652486 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182961.2 -1 reviewed p.R4445I 0.997 43 0% 79 43% 0 - probably_damaging(0.999) - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152751763 152751763 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182961.2 -1 reviewed p.T1515A 0.996 128 0% 97 40.2% 0 - benign(0.394) - - HMMSmart_SM00150,superfamily_Spectrin repeat FBXO5 26271 genome.wustl.edu 37 6 153292541 153292541 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012177.3 -1 reviewed p.K367 1.000 60 0% 104 31.7% 2 50% - - - NULL FBXO5 26271 genome.wustl.edu 37 6 153296143 153296143 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012177.3 -1 reviewed p.M239I 1.000 191 0% 209 37.8% 0 - probably_damaging(0.999) deleterious(0.05) deleterious(0.836) NULL FBXO5 26271 genome.wustl.edu 37 6 153296570 153296570 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012177.3 -1 reviewed p.G97E 0.130 209 0% 271 34.7% 2 100% benign(0.001) tolerated(0.56) neutral(0.006) NULL ARID1B 57492 genome.wustl.edu 37 6 157495218 157495218 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017519.2 +1 validated p.E963D 1.000 90 0% 78 39.7% 3 66.6% possibly_damaging(0.617) tolerated(0.56) neutral(0.221) NULL IGF2R 3482 genome.wustl.edu 37 6 160468290 160468290 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000876.2 +1 reviewed p.N717 0.036 64 0% 77 45.5% 0 - - - - superfamily_Mannose 6-phosphate receptor domain IGF2R 3482 genome.wustl.edu 37 6 160501309 160501309 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000876.2 +1 reviewed e39+2 0.972 15 0% 50 36% 1 100% - - - - AGPAT4 56895 genome.wustl.edu 37 6 161557582 161557582 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020133.2 -1 reviewed p.L376R 1.000 32 0% 98 38.8% 4 0% benign(0.013) tolerated(0.86) neutral(0.001) NULL UNC93A 54346 genome.wustl.edu 37 6 167705020 167705020 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018974.3 +1 validated p.F15V 0.996 122 0% 172 36% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_DUF895,superfamily_MFS_gen_substrate_transporter LOC100289471 100289471 genome.wustl.edu 37 6 169648505 169648505 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002342681.1 +1 model e1-2 0.000 6 0.000 39 0.410 0 - - - - - PHF10 55274 genome.wustl.edu 37 6 170110429 170110429 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018288.3 -1 reviewed p.S339Y 0.006 99 0% 155 41.9% 9 44.4% benign(0.159) tolerated(0.07) neutral(0.333) NULL SUN1 23353 genome.wustl.edu 37 7 883046 883046 + Frame_Shift_Del DEL T T - novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130965.2 +1 reviewed p.F183fs 1.000 - - - - - - - - - HMMPfam_MRP GNA12 2768 genome.wustl.edu 37 7 2771138 2771138 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007353.2 -1 validated p.N275D 1.000 23 0% 71 46.5% 9 66.6% probably_damaging(0.982) tolerated(0.58) neutral(0.431) HMMPfam_G-alpha,superfamily_SSF52540 CARD11 84433 genome.wustl.edu 37 7 2983886 2983886 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032415.3 -1 validated p.K215T 1.000 16 0% 40 42.5% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PMS2 5395 genome.wustl.edu 37 7 6035205 6035205 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000535.5 -1 reviewed p.Q288R 1.000 59 0% 119 48.7% 7 28.5% possibly_damaging(0.917) deleterious(0.02) deleterious(0.751) HMMPfam_DNA_mis_repair,superfamily_Ribosomal protein S5 domain 2-like CYTH3 9265 genome.wustl.edu 37 7 6213283 6213283 + Splice_Site SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004227.3 -1 reviewed e6+1 1.000 115 0% 170 50% 0 - - - - - PHF14 9678 genome.wustl.edu 37 7 11082384 11082384 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000303905 +1 known p.L752P 1.000 306 0% 184 44% 27 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD THSD7A 221981 genome.wustl.edu 37 7 11419327 11419327 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015204.2 -1 validated p.V1507A 0.960 35 0% 41 56.1% 1 0% benign(0.122) tolerated(0.76) neutral(0.011) NULL THSD7A 221981 genome.wustl.edu 37 7 11501636 11501636 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015204.2 -1 validated e10+2 1.000 34 0% 44 50% 1 100% - - - - TWISTNB 221830 genome.wustl.edu 37 7 19738110 19738110 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001002926.1 -1 validated p.K282 0.295 85 0% 113 43.4% 1 0% - - - NULL MACC1 346389 genome.wustl.edu 37 7 20197899 20197899 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182762.3 -1 validated p.Y695 1.000 155 0% 76 46.1% 1 0% - - - superfamily_DEATH domain DNAH11 8701 genome.wustl.edu 37 7 21675637 21675637 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003777.3 +1 reviewed p.F1555S 1.000 119 0% 104 38.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DHC_N2 DNAH11 8701 genome.wustl.edu 37 7 21882215 21882215 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003777.3 +1 reviewed p.I3589T 1.000 147 0% 93 50.5% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL GPNMB 10457 genome.wustl.edu 37 7 23313810 23313810 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005340.1 +1 reviewed p.L562 1.000 47 0% 39 38.5% 5 0% - - - NULL OSBPL3 26031 genome.wustl.edu 37 7 24892253 24892253 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015550.2 -1 reviewed p.V343A 1.000 26 0% 42 47.6% 2 100% benign(0.015) deleterious(0.03) neutral(0.365) NULL NFE2L3 9603 genome.wustl.edu 37 7 26225319 26225319 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004289.6 +1 reviewed p.T667 0.010 49 0% 82 35.4% 31 22.5% - - - NULL CBX3 11335 genome.wustl.edu 37 7 26251822 26251822 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007276.3 +1 reviewed p.A182 1.000 70 0% 60 23.3% 4 50% - - - NULL HOXA1 3198 genome.wustl.edu 37 7 27134120 27134120 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005522.4 -1 reviewed p.S316Y 1.000 15 0% 98 54.1% 0 - benign(0.113) deleterious(0) neutral(0.454) NULL FKBP9 11328 genome.wustl.edu 37 7 33039856 33039856 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007270.3 +1 validated p.Y452 0.422 74 0% 152 30.3% 4 25% - - - HMMPfam_FKBP_C,superfamily_SSF54534 BBS9 27241 genome.wustl.edu 37 7 33427642 33427642 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000434373 +1 known p.*234R 0.996 62 0% 104 43.3% 5 20% - - - NULL HECW1 23072 genome.wustl.edu 37 7 43540347 43540347 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015052.3 +1 validated p.L1163M 1.000 94 0% 128 36.7% 1 100% possibly_damaging(0.926) deleterious(0.02) deleterious(0.758) NULL ZMIZ2 83637 genome.wustl.edu 37 7 44802856 44802856 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031449.3 +1 validated p.I568 1.000 31 0% 104 51.9% 94 59.5% - - - NULL NACAD 23148 genome.wustl.edu 37 7 45120312 45120312 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000258775 -1 known p.Q1534R 1.000 15 0% 89 43.8% 3 33.3% benign(0.359) deleterious(0) deleterious(0.558) NULL HUS1 3364 genome.wustl.edu 37 7 48008864 48008864 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004507.2 -1 reviewed p.L198I 0.800 409 0% 286 42.7% 4 50% benign(0) tolerated(0.42) neutral(0.014) HMMPfam_Hus1 UPP1 7378 genome.wustl.edu 37 7 48139359 48139359 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003364.2 +1 validated p.F46S 1.000 124 0% 146 42.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Purine and uridine phosphorylases ZNF107 51427 genome.wustl.edu 37 7 64167168 64167168 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001013746.1 +1 validated p.C162 0.035 32 0% 46 45.7% 1 100% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 RABGEF1 27342 genome.wustl.edu 37 7 66248718 66248718 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014504.2 +1 validated p.T135A 1.000 104 0% 72 33.3% 0 - benign(0.005) tolerated(0.44) neutral(0.013) superfamily_SSF109993 RABGEF1 27342 genome.wustl.edu 37 7 66270163 66270163 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014504.2 +1 validated p.D286G 1.000 69 0% 75 45.3% 15 46.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993 LAT2 7462 genome.wustl.edu 37 7 73635986 73635986 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014146.3 +1 reviewed p.Y118H 0.007 45 0% 109 41.3% 1 0% possibly_damaging(0.926) tolerated(0.07) deleterious(0.694) NULL PION 54103 genome.wustl.edu 37 7 76957927 76957927 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017439.3 -1 validated p.N587K 0.000 181 0% 94 33% 8 87.5% benign(0.014) tolerated(0.88) neutral(0.001) NULL HGF 3082 genome.wustl.edu 37 7 81388045 81388045 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000601.4 -1 reviewed p.K110 0.881 203 0% 128 44.5% 1 0% - - - HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Kringle-like,superfamily_Hairpin loop containing domain-like PCLO 27445 genome.wustl.edu 37 7 82453556 82453556 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000426442 -1 known p.Q1133R 1.000 95 0% 100 40% 1 100% - - - NULL PCLO 27445 genome.wustl.edu 37 7 82580023 82580023 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033026.5 -1 validated p.E3294V 1.000 57 0% 76 42.1% 0 - probably_damaging(0.995) - - NULL PCLO 27445 genome.wustl.edu 37 7 82580161 82580161 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033026.5 -1 validated p.Q3248R 1.000 28 0% 40 37.5% 0 - possibly_damaging(0.891) - - NULL STEAP4 79689 genome.wustl.edu 37 7 87912245 87912245 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024636.2 -1 validated p.K232R 0.853 112 0% 66 42.4% 0 - benign(0.005) tolerated(0.13) neutral(0.253) NULL STEAP2 261729 genome.wustl.edu 37 7 89866209 89866209 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000394632 +1 known p.F397S 0.004 141 0% 98 45.9% 21 71.4% benign(0.001) tolerated(0.38) neutral(0.018) NULL C7orf63 79846 genome.wustl.edu 37 7 89903409 89903409 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001039706.2 +1 validated p.P323 0.995 124 0% 82 35.4% 2 0% - - - superfamily_ARM-type_fold AKAP9 10142 genome.wustl.edu 37 7 91630937 91630937 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005751.4 +1 reviewed p.E569G 1.000 72 0% 48 41.7% 1 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL AKAP9 10142 genome.wustl.edu 37 7 91724479 91724479 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005751.4 +1 reviewed p.E3241* 1.000 87 0% 53 37.7% 3 0% - - - NULL KRIT1 889 genome.wustl.edu 37 7 91855063 91855063 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004912.3 -1 reviewed p.K409E 1.000 436 0% 369 46.6% 6 50% benign(0.103) deleterious(0.03) neutral(0.372) superfamily_Ankyrin repeat PEX1 5189 genome.wustl.edu 37 7 92148327 92148327 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000466.2 -1 reviewed p.A113 0.998 274 0% 191 39.8% 0 - - - - superfamily_ADC-like,HMMPfam_PEX-1N SAMD9 54809 genome.wustl.edu 37 7 92733856 92733856 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017654.2 -1 validated p.S519P 0.970 104 0% 88 47.7% 1 100% possibly_damaging(0.861) tolerated(0.17) neutral(0.392) NULL SAMD9L 219285 genome.wustl.edu 37 7 92765062 92765062 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152703.2 -1 validated p.L75M 0.000 170 0% 119 43.7% 0 - probably_damaging(0.962) deleterious(0) deleterious(0.850) superfamily_SAM/Pointed domain ASNS 440 genome.wustl.edu 37 7 97486112 97486112 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001673.4 -1 reviewed p.G307V 1.000 98 0% 75 44% 24 70.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Asn_synthase,superfamily_SSF52402 ASNS 440 genome.wustl.edu 37 7 97493674 97493674 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001673.4 -1 reviewed p.T128 0.733 99 0% 85 29.4% 17 70.5% - - - HMMPfam_GATase_2,superfamily_SSF56235 TECPR1 25851 genome.wustl.edu 37 7 97872903 97872903 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015395.1 -1 provisional p.I178T 1.000 21 0% 58 39.7% 3 33.3% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL TRRAP 8295 genome.wustl.edu 37 7 98547077 98547077 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003496.2 +1 validated p.D1584G 1.000 22 0% 50 32% 1 0% possibly_damaging(0.783) tolerated(0.09) deleterious(0.589) superfamily_ARM repeat PTCD1 26024 genome.wustl.edu 37 7 99032599 99032599 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015545.2 -1 validated p.F89 1.000 31 0% 109 36.7% 0 - - - - NULL TAF6 6878 genome.wustl.edu 37 7 99709413 99709413 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005641.2 -1 reviewed p.I280V 1.000 24 0% 127 39.4% 16 43.7% possibly_damaging(0.714) deleterious(0.02) deleterious(0.641) NULL AGFG2 3268 genome.wustl.edu 37 7 100148117 100148117 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006076.4 +1 reviewed p.K138N 1.000 157 0% 170 45.9% 2 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain PCOLCE 5118 genome.wustl.edu 37 7 100204049 100204049 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002593.3 +1 reviewed p.S246P 1.000 9 0.000 64 0.297 102 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ZAN 7455 genome.wustl.edu 37 7 100391654 100391654 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000427578 +1 known p.Q2688H 0.001 9 0.000 38 0.474 0 - unknown(0) - - NULL SRRT 51593 genome.wustl.edu 37 7 100485720 100485720 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015908.5 +1 validated p.L795R 1.000 28 0% 184 47.3% 167 40.1% possibly_damaging(0.844) tolerated(0.35) neutral(0.344) HMMPfam_ARS2 ACHE 43 genome.wustl.edu 37 7 100490887 100490887 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015831.2 -1 reviewed p.E323* 0.975 8 0.000 59 0.508 0 - - - - HMMPfam_COesterase,superfamily_SSF53474 MUC17 140453 genome.wustl.edu 37 7 100681252 100681252 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001040105.1 +1 provisional p.P2185 0.134 113 0% 121 36.4% 0 - - - - NULL MUC17 140453 genome.wustl.edu 37 7 100682702 100682702 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001040105.1 +1 provisional p.G2669* 0.003 73 0% 113 50.4% 0 - - - - NULL FIS1 51024 genome.wustl.edu 37 7 100883143 100883143 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016068.2 -1 validated p.G135S 1.000 6 0.000 41 0.561 373 48.5% unknown(0) - - NULL ORC5 5001 genome.wustl.edu 37 7 103807265 103807265 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002553.2 -1 reviewed p.L315 0.997 105 0% 131 45.8% 4 75% - - - NULL MLL5 55904 genome.wustl.edu 37 7 104751041 104751041 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018682.3 +1 reviewed p.L1321R 0.268 127 0% 122 35.2% 16 25% possibly_damaging(0.462) tolerated(0.21) neutral(0.196) NULL LAMB1 3912 genome.wustl.edu 37 7 107570033 107570033 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002291.2 -1 reviewed p.A1523 0.746 100 0% 122 42.6% 75 32% - - - NULL TMEM168 64418 genome.wustl.edu 37 7 112407776 112407776 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022484.4 -1 validated p.T524A 1.000 28 0% 14 50% 1 0% possibly_damaging(0.649) tolerated(0.1) deleterious(0.514) NULL TMEM168 64418 genome.wustl.edu 37 7 112415294 112415294 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022484.4 -1 validated p.L403S 1.000 74 0% 66 33.3% 2 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL MDFIC 29969 genome.wustl.edu 37 7 114619644 114619644 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000393486 +1 known p.T101P 0.149 67 0% 42 31% 1 0% benign(0) tolerated(0.24) neutral(0.037) NULL WNT2 7472 genome.wustl.edu 37 7 116963072 116963072 + RNA SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NR_024047.1 -1 reviewed NULL 1.000 7 0.000 55 0.473 1 0% - - - - KCND2 3751 genome.wustl.edu 37 7 119915204 119915204 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012281.2 +1 reviewed p.R173K 1.000 25 0% 85 44.7% 0 - benign(0.19) tolerated(0.23) neutral(0.059) NULL KCND2 3751 genome.wustl.edu 37 7 119915634 119915634 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012281.2 +1 reviewed p.T316 0.000 43 0% 167 41.9% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels LMOD2 442721 genome.wustl.edu 37 7 123296107 123296107 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207163.1 +1 validated p.L30 1.000 27 0% 28 57.1% 0 - - - - NULL ZNF800 168850 genome.wustl.edu 37 7 127013394 127013394 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000265827 -1 known e4+2 1.000 160 0% 88 40.9% 0 - - - - - OPN1SW 611 genome.wustl.edu 37 7 128415770 128415770 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001708.2 -1 reviewed p.Q25 1.000 26 0% 57 35.1% 0 - - - - superfamily_Family A G protein-coupled receptor-like CCDC136 64753 genome.wustl.edu 37 7 128445448 128445448 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022742.3 +1 validated p.Q273R 0.378 25 0% 37 43.2% 0 - benign(0.297) tolerated(0.53) neutral(0.100) NULL STRA8 346673 genome.wustl.edu 37 7 134939933 134939933 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182489.1 +1 provisional p.N292D 0.000 87 0% 108 43.5% 0 - benign(0) tolerated(1) - NULL NUP205 23165 genome.wustl.edu 37 7 135285616 135285616 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015135.2 +1 validated e16-2 1.000 380 0% 210 44.8% 0 - - - - - ZC3HAV1 56829 genome.wustl.edu 37 7 138761051 138761051 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020119.3 -1 reviewed p.C560R 0.980 66 0% 103 41.7% 4 75% possibly_damaging(0.828) deleterious(0) deleterious(0.758) NULL KLRG2 346689 genome.wustl.edu 37 7 139138360 139138360 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000393039 -1 known p.P284H 1.000 7 0.000 26 0.462 0 - unknown(0) - - NULL TRBV7-8 28590 genome.wustl.edu 37 7 142099635 142099635 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000390359 -1 known p.Q56R 0.005 43 0% 51 27.5% 0 - possibly_damaging(0.812) tolerated(0.1) deleterious(0.592) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 EPHA1 2041 genome.wustl.edu 37 7 143088824 143088824 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005232.4 -1 reviewed p.P914L 0.985 17 0% 53 37.7% 49 30.6% probably_damaging(0.998) tolerated(0.15) deleterious(0.716) HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain ARHGEF5 7984 genome.wustl.edu 37 7 144068342 144068342 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005435.3 +1 reviewed p.R1207Q 0.141 80 0% 140 20.7% 4 25% benign(0.108) deleterious(0.05) neutral(0.354) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) CUL1 8454 genome.wustl.edu 37 7 148487426 148487426 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003592.2 +1 validated p.T567A 1.000 98 0% 148 46.6% 16 31.2% benign(0.2) tolerated(0.4) neutral(0.035) HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain ZNF786 136051 genome.wustl.edu 37 7 148769512 148769512 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152411.3 -1 validated p.P118T 0.000 58 0% 165 46.1% 2 50% benign(0.001) tolerated(0.07) neutral(0.319) NULL ZNF398 57541 genome.wustl.edu 37 7 148875741 148875741 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_170686.2 +1 reviewed p.D259 0.965 52 0% 121 49.6% 3 100% - - - NULL ZNF862 643641 genome.wustl.edu 37 7 149558307 149558307 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001099220.1 +1 provisional p.R686 1.000 7 0.000 21 0.619 6 50% - - - NULL MLL3 58508 genome.wustl.edu 37 7 151879155 151879155 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_170606.2 -1 reviewed p.S1930 0.000 46 0% 37 48.6% 0 - - - - NULL NOM1 64434 genome.wustl.edu 37 7 156756639 156756639 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138400.1 +1 provisional p.M651T 1.000 91 0% 105 43.8% 3 66.6% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL UBE3C 9690 genome.wustl.edu 37 7 157060412 157060412 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014671.2 +1 validated p.Y1072C 0.999 43 0% 136 36.8% 11 45.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain MIR153-2 406945 genome.wustl.edu 37 7 157367048 157367048 + RNA SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000385225 -1 known NULL 1.000 51 0% 126 42.9% 0 - - - - - PTPRN2 5799 genome.wustl.edu 37 7 157959832 157959832 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002847.3 -1 reviewed p.D234G 0.035 5 0.000 43 0.488 0 - benign(0.244) deleterious(0.03) neutral(0.389) NULL NCAPG2 54892 genome.wustl.edu 37 7 158482643 158482643 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017760.5 -1 validated p.G180 1.000 94 0% 63 49.2% 0 - - - - NULL FBXO25 26260 genome.wustl.edu 37 8 385641 385641 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_183421.1 +1 reviewed p.E105 1.000 97 0% 55 45.5% 2 50% - - - NULL XKR6 286046 genome.wustl.edu 37 8 10756041 10756041 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000382461 -1 known p.S226Y 1.000 66 0% 58 53.4% 0 - - - - HMMPfam_XK-related BLK 640 genome.wustl.edu 37 8 11420545 11420545 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001715.2 +1 validated p.T413I 1.000 11 0% 60 45% 0 - probably_damaging(0.985) deleterious(0) deleterious(0.877) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) PCM1 5108 genome.wustl.edu 37 8 17843071 17843071 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006197.3 +1 validated p.H1408 1.000 95 0% 110 39.1% 10 40% - - - NULL CSGALNACT1 55790 genome.wustl.edu 37 8 19276174 19276174 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130518.1 -1 validated p.Q407R 1.000 87 0% 57 36.8% 0 - benign(0.001) tolerated(0.27) neutral(0.034) HMMPfam_CHGN,superfamily_SSF53448 LPL 4023 genome.wustl.edu 37 8 19813489 19813489 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000311322 +1 known p.C305R 1.000 51 0% 50 50% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases LPL 4023 genome.wustl.edu 37 8 19818465 19818465 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000311322 +1 known p.D398G 0.997 143 0% 45 28.9% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain) FAM160B2 64760 genome.wustl.edu 37 8 21959293 21959293 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022749.5 +1 validated p.P594 0.031 21 0% 110 45.5% 92 46.7% - - - NULL KIAA1967 57805 genome.wustl.edu 37 8 22477160 22477160 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021174.4 +1 validated p.W913R 1.000 9 0.000 52 0.365 46 41.3% possibly_damaging(0.926) tolerated(0.21) neutral(0.418) NULL ADAM28 10863 genome.wustl.edu 37 8 24201060 24201060 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014265.4 +1 reviewed p.W651C 1.000 46 0% 91 45.1% 105 53.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) PatternScan_EGF_2 EXTL3 2137 genome.wustl.edu 37 8 28574701 28574701 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001440.2 +1 provisional p.Y375 0.990 4 0.000 33 0.424 1 0% - - - HMMPfam_Exostosin TEX15 56154 genome.wustl.edu 37 8 30700635 30700635 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031271.3 -1 validated p.A1967S 0.001 112 0% 45 40% 0 - benign(0.005) tolerated(0.11) neutral(0.272) NULL TEX15 56154 genome.wustl.edu 37 8 30702526 30702526 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031271.3 -1 validated p.Q1336H 0.000 167 0% 119 42% 0 - possibly_damaging(0.842) tolerated(0.16) neutral(0.382) NULL NRG1 3084 genome.wustl.edu 37 8 32505761 32505761 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013959.3 +1 reviewed p.K175N 0.886 105 0% 265 41.9% 0 - benign(0.304) tolerated(0.05) neutral(0.440) NULL ADAM32 203102 genome.wustl.edu 37 8 39022345 39022345 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145004.5 +1 validated p.L219 0.994 248 0% 172 38.4% 1 100% - - - "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" ANK1 286 genome.wustl.edu 37 8 41522411 41522411 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142445.1 -1 reviewed p.L44P 1.000 10 0% 49 30.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL KAT6A 7994 genome.wustl.edu 37 8 41791031 41791031 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001099412.1 -1 validated p.Y1569 0.331 24 0% 118 44.1% 2 0% - - - NULL KAT6A 7994 genome.wustl.edu 37 8 41832220 41832220 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001099412.1 -1 validated e7+2 1.000 171 0% 105 31.4% 0 - - - - - PRKDC 5591 genome.wustl.edu 37 8 48694765 48694765 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000314191 -1 known p.L3815P 0.981 55 0% 65 41.5% 3 0% probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like) PRKDC 5591 genome.wustl.edu 37 8 48697738 48697738 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000314191 -1 known p.K3680N 0.922 150 0% 181 42% 3 33.3% benign(0.085) deleterious(0.03) neutral(0.370) superfamily_Protein kinase-like (PK-like) PRKDC 5591 genome.wustl.edu 37 8 48848299 48848299 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000314191 -1 known p.S480 1.000 68 0% 79 54.4% 1 100% - - - superfamily_ARM repeat MCM4 4173 genome.wustl.edu 37 8 48882479 48882479 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005914.2 +1 reviewed p.L432 0.967 76 0% 140 43.6% 1 0% - - - HMMSmart_MCM SNTG1 54212 genome.wustl.edu 37 8 51571167 51571167 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018967.2 +1 reviewed p.W328R 1.000 115 0% 54 46.3% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00233,superfamily_PH domain-like PXDNL 137902 genome.wustl.edu 37 8 52325771 52325771 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144651.4 -1 validated p.L615I 0.997 201 0% 291 49.8% 0 - benign(0.016) tolerated(0.19) neutral(0.050) NULL ST18 9705 genome.wustl.edu 37 8 53049159 53049159 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014682.2 -1 validated p.Q764R 1.000 40 0% 41 36.6% 0 - probably_damaging(0.998) tolerated(0.09) deleterious(0.771) superfamily_SSF103637 ST18 9705 genome.wustl.edu 37 8 53092736 53092736 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014682.2 -1 validated p.S75G 0.378 121 0% 148 41.9% 0 - benign(0) deleterious(0.01) neutral(0.406) NULL RB1CC1 9821 genome.wustl.edu 37 8 53555272 53555272 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014781.4 -1 reviewed p.R1363Q 1.000 427 0.2% 134 48.5% 2 0% possibly_damaging(0.747) tolerated(0.1) deleterious(0.560) NULL RB1CC1 9821 genome.wustl.edu 37 8 53558314 53558314 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014781.4 -1 reviewed p.R1312I 1.000 152 0% 68 41.2% 3 0% possibly_damaging(0.856) deleterious(0.01) deleterious(0.736) NULL RB1CC1 9821 genome.wustl.edu 37 8 53568809 53568809 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014781.4 -1 reviewed p.K1194Q 1.000 380 0% 210 39.5% 1 100% benign(0.002) tolerated(0.22) neutral(0.042) NULL IMPAD1 54928 genome.wustl.edu 37 8 57876368 57876368 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017813.3 -1 validated p.K355R 1.000 28 0% 31 41.9% 1 100% benign(0.113) tolerated(0.3) neutral(0.037) HMMPfam_Inositol_P CHD7 55636 genome.wustl.edu 37 8 61763845 61763845 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017780.2 +1 reviewed p.D1878N 1.000 152 0% 89 37.1% 1 0% possibly_damaging(0.937) tolerated(0.14) deleterious(0.633) NULL TRIM55 84675 genome.wustl.edu 37 8 67064668 67064668 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_184085.1 +1 reviewed p.E348* 0.103 69 0% 65 41.5% 0 - - - - NULL C8orf46 254778 genome.wustl.edu 37 8 67425791 67425791 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152765.3 +1 validated p.R120Q 1.000 17 0% 60 60% 2 100% probably_damaging(0.975) tolerated(0.13) deleterious(0.669) NULL VCPIP1 80124 genome.wustl.edu 37 8 67576776 67576776 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025054.4 -1 validated p.R806 1.000 133 0% 195 41.5% 1 100% - - - NULL C8orf84 157869 genome.wustl.edu 37 8 73993283 73993283 + Missense_Mutation SNP G G A rs150036727 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153225.3 -1 validated p.P127L 0.000 6 0.167 17 0.588 229 48.4% benign(0.012) tolerated(0.71) neutral(0.002) HMMSmart_TSP1 HNF4G 3174 genome.wustl.edu 37 8 76470901 76470901 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004133.4 +1 validated p.D284 0.986 168 0% 71 39.4% 1 100% - - - HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor SLC10A5 347051 genome.wustl.edu 37 8 82605955 82605955 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001010893.2 -1 validated p.Y418C 1.000 94 0% 54 50% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL RALYL 138046 genome.wustl.edu 37 8 85785545 85785545 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001100391.1 +1 validated p.K213E 1.000 136 0% 70 51.4% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL PSKH2 85481 genome.wustl.edu 37 8 87076630 87076630 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033126.1 -1 provisional p.L139P 1.000 27 0% 63 49.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase MMP16 4325 genome.wustl.edu 37 8 89068484 89068484 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005941.4 -1 reviewed p.K415 1.000 106 0% 35 45.7% 0 - - - - superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120 OSGIN2 734 genome.wustl.edu 37 8 90937219 90937219 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001126111.1 +1 validated p.P370L 1.000 72 0% 57 31.6% 2 50% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_FAD/NAD(P)-binding domain SLC26A7 115111 genome.wustl.edu 37 8 92350457 92350457 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_134266.1 +1 reviewed p.Q292R 1.000 257 0.4% 105 42.9% 0 - benign(0.025) tolerated(0.48) neutral(0.011) HMMPfam_Sulfate_transp RBM12B 389677 genome.wustl.edu 37 8 94746449 94746449 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_203390.2 -1 validated p.H730Q 0.001 6 0.000 38 0.368 4 25% benign(0.04) deleterious(0.03) neutral(0.367) NULL RBM12B 389677 genome.wustl.edu 37 8 94748072 94748072 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_203390.2 -1 validated p.H189 0.031 135 0% 230 42.2% 4 25% - - - HMMSmart_SM00360,superfamily_RNA-binding domain RBD SDC2 6383 genome.wustl.edu 37 8 97620652 97620652 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002998.3 +1 reviewed p.T132 0.458 98 0% 57 43.9% 82 46.3% - - - HMMPfam_Syndecan MATN2 4147 genome.wustl.edu 37 8 99019445 99019445 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002380.3 +1 reviewed p.K480N 1.000 20 0% 61 42.6% 3 33.3% probably_damaging(0.985) deleterious(0) deleterious(0.877) HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin NIPAL2 79815 genome.wustl.edu 37 8 99264767 99264767 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024759.1 -1 provisional p.G100 0.960 25 0% 51 43.1% 0 - - - - HMMPfam_DUF803,superfamily_SSF103481 SPAG1 6674 genome.wustl.edu 37 8 101252959 101252959 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003114.3 +1 reviewed p.Y870F 1.000 110 0% 89 40.4% 4 100% benign(0.214) tolerated(0.53) neutral(0.029) NULL RRM2B 50484 genome.wustl.edu 37 8 103237118 103237118 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015713.4 -1 reviewed p.K150N 1.000 149 0% 111 45% 0 - benign(0) tolerated(0.14) neutral(0.249) HMMPfam_Ribonuc_red_sm,superfamily_Ferritin-like UBR5 51366 genome.wustl.edu 37 8 103359210 103359210 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015902.4 -1 reviewed p.D166G 1.000 26 0% 39 59% 1 100% possibly_damaging(0.888) tolerated(0.07) deleterious(0.666) NULL OXR1 55074 genome.wustl.edu 37 8 107718791 107718791 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018002.2 +1 validated p.R348* 1.000 58 0% 62 43.5% 1 0% - - - NULL EIF3E 3646 genome.wustl.edu 37 8 109254087 109254087 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001568.2 -1 validated p.N49I 1.000 200 0% 131 41.2% 22 54.5% probably_damaging(0.983) deleterious(0) deleterious(0.873) HMMPfam_eIF3_N NUDCD1 84955 genome.wustl.edu 37 8 110308739 110308739 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032869.3 -1 validated p.C111 0.003 108 0% 82 46.3% 1 0% - - - NULL PKHD1L1 93035 genome.wustl.edu 37 8 110504113 110504113 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_177531.4 +1 validated p.W3376R 1.000 28 0% 60 38.3% 5 40% benign(0.234) tolerated(0.29) neutral(0.053) HMMSmart_SM00710,superfamily_Pectin lyase-like CSMD3 114788 genome.wustl.edu 37 8 113314020 113314020 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198123.1 -1 validated e53+2 1.000 112 0% 97 43.3% 0 - - - - - CSMD3 114788 genome.wustl.edu 37 8 113348978 113348978 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198123.1 -1 validated p.D2308Y 1.000 93 0% 67 49.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CSMD3 114788 genome.wustl.edu 37 8 113988155 113988155 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198123.1 -1 validated p.H418R 1.000 220 0.5% 150 36% 0 - unknown(0) deleterious(0) - NULL UTP23 84294 genome.wustl.edu 37 8 117783954 117783954 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032334.2 +1 validated p.L208S 1.000 55 0% 50 44% 3 100% possibly_damaging(0.914) deleterious(0.02) deleterious(0.749) NULL RAD21 5885 genome.wustl.edu 37 8 117875482 117875482 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006265.2 -1 reviewed p.R54Q 1.000 159 0% 137 39.4% 9 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Rad21_Rec8_N MED30 90390 genome.wustl.edu 37 8 118540964 118540964 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_080651.2 +1 validated p.Q84H 0.918 127 0% 151 47% 7 28.5% possibly_damaging(0.913) deleterious(0.03) deleterious(0.729) NULL SAMD12 401474 genome.wustl.edu 37 8 119391750 119391750 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207506.2 -1 validated p.K171R 0.000 141 0% 107 40.2% 0 - benign(0.301) deleterious(0) deleterious(0.537) NULL ENPP2 5168 genome.wustl.edu 37 8 120595979 120595979 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006209.3 -1 reviewed p.I559 0.978 196 0% 120 46.7% 0 - - - - superfamily_Alkaline phosphatase-like ATAD2 29028 genome.wustl.edu 37 8 124358425 124358425 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014109.3 -1 reviewed p.P811 0.998 78 0% 55 49.1% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases SQLE 6713 genome.wustl.edu 37 8 126021290 126021290 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003129.3 +1 reviewed p.V300 0.222 197 0% 179 41.3% 6 66.6% - - - HMMPfam_SE,superfamily_SSF51905 MYC 4609 genome.wustl.edu 37 8 128752945 128752945 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002467.4 +1 reviewed p.V369D 1.000 35 0% 103 49.5% 16 43.7% benign(0) tolerated(1) - NULL EFR3A 23167 genome.wustl.edu 37 8 132952757 132952757 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015137.3 +1 validated p.C8R 1.000 121 0% 107 46.7% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PTK2 5747 genome.wustl.edu 37 8 141669667 141669667 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005607.3 -1 reviewed p.Q1041H 0.946 46 0% 100 48% 33 39.3% benign(0) tolerated(0.17) neutral(0.059) HMMPfam_Focal_AT,superfamily_Focal_AT EPPK1 83481 genome.wustl.edu 37 8 144940264 144940264 + Missense_Mutation SNP G G T rs141324367 TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031308.1 -1 validated p.F2386L 1.000 35 0% 211 31.3% 8 50% probably_damaging(0.991) tolerated(0.17) deleterious(0.503) HMMSmart_SM00250,superfamily_Plakin repeat PLEC 5339 genome.wustl.edu 37 8 144996955 144996955 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_201380.2 -1 reviewed p.E2518G 1.000 4 0.000 8 0.500 23 30.4% probably_damaging(0.972) - - NULL PLEC 5339 genome.wustl.edu 37 8 145004570 145004570 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_201380.2 -1 reviewed p.C950 0.996 4 0.000 22 0.455 6 33.3% - - - HMMSmart_SM00150,superfamily_Spectrin repeat SHARPIN 81858 genome.wustl.edu 37 8 145153828 145153828 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030974.3 -1 validated p.T373P 1.000 12 0% 87 28.7% 314 52.8% probably_damaging(0.999) tolerated(0.23) deleterious(0.532) HMMPfam_zf-RanBP,HMMSmart_SM00547,superfamily_NZF domain FOXD4 2298 genome.wustl.edu 37 9 118107 118107 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207305.3 -1 validated p.R5G 0.976 21 0% 104 31.7% 2 0% probably_damaging(0.958) deleterious(0) deleterious(0.846) NULL DOCK8 81704 genome.wustl.edu 37 9 377046 377046 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_203447.3 +1 reviewed p.V691M 1.000 8 0.000 13 0.462 2 0% possibly_damaging(0.768) tolerated(0.1) deleterious(0.571) NULL RFX3 5991 genome.wustl.edu 37 9 3247939 3247939 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002919.2 -1 reviewed p.M687I 0.002 91 0% 49 36.7% 0 - benign(0) - - NULL CD274 29126 genome.wustl.edu 37 9 5463113 5463113 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014143.3 +1 validated p.V225A 0.858 111 0% 87 37.9% 0 - probably_damaging(0.969) deleterious(0.05) deleterious(0.757) HMMSmart_SM00409,superfamily_Immunoglobulin ERMP1 79956 genome.wustl.edu 37 9 5801252 5801252 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024896.2 -1 validated p.L664R 1.000 231 0% 147 40.8% 2 50% possibly_damaging(0.846) deleterious(0.03) deleterious(0.690) NULL LOC645969 645969 genome.wustl.edu 37 9 6278942 6278942 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002342907.1 +1 model p.N66 1.000 297 0% 384 47.1% 0 - - - - HMMPfam_SelT UHRF2 115426 genome.wustl.edu 37 9 6420974 6420974 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152896.1 +1 reviewed p.L72 1.000 101 0% 166 42.8% 2 100% - - - HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like PTPRD 5789 genome.wustl.edu 37 9 8341877 8341877 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002839.3 -1 reviewed p.M1588T 1.000 252 0% 141 37.6% 0 - probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II PTPRD 5789 genome.wustl.edu 37 9 8521393 8521393 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002839.3 -1 reviewed p.M282T 1.000 101 0% 52 42.3% 0 - possibly_damaging(0.513) tolerated(0.16) neutral(0.232) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin LOC138864 138864 genome.wustl.edu 37 9 14069295 14069295 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002342892.1 +1 model p.M122T 0.981 71 0% 32 46.9% 0 - - - - HMMPfam_Mt_ATP-synt_D FREM1 158326 genome.wustl.edu 37 9 14824037 14824037 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144966.5 -1 reviewed p.R719W 0.994 74 0% 47 44.7% 0 - probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL PSIP1 11168 genome.wustl.edu 37 9 15486003 15486003 + Splice_Site SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001128217.1 -1 validated e5+1 1.000 237 0% 180 42.8% 11 100% - - - - KIAA1797 54914 genome.wustl.edu 37 9 20764956 20764956 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017794.3 +1 validated p.R195* 0.161 151 0% 72 51.4% 2 0% - - - NULL IFNA8 3445 genome.wustl.edu 37 9 21409744 21409744 + Nonstop_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002170.3 +1 validated p.*190L 0.000 89 0% 87 36.8% 0 - - - - NULL TOPORS 10210 genome.wustl.edu 37 9 32542291 32542291 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005802.3 -1 reviewed p.F744 0.999 243 0% 184 43.5% 0 - - - - NULL TAF1L 138474 genome.wustl.edu 37 9 32630348 32630348 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153809.2 -1 provisional p.L1744I 0.990 130 0% 196 44.9% 0 - probably_damaging(0.994) tolerated(0.46) neutral(0.464) NULL BAG1 573 genome.wustl.edu 37 9 33255272 33255272 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004323.5 -1 reviewed p.N328S 0.984 19 0% 45 44.4% 177 37.8% benign(0.013) tolerated(0.89) neutral(0.001) superfamily_BAG domain ANKRD18B 441459 genome.wustl.edu 37 9 33567210 33567210 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_001718334.2 +1 model p.M1017T 0.002 18 0% 10 50% 0 - possibly_damaging(0.794) tolerated(0.05) deleterious(0.643) NULL UNC13B 10497 genome.wustl.edu 37 9 35403533 35403533 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006377.3 +1 reviewed p.R1476K 1.000 28 0% 44 34.1% 11 63.6% possibly_damaging(0.906) tolerated(0.08) deleterious(0.659) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB TLN1 7094 genome.wustl.edu 37 9 35704812 35704812 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006289.3 -1 reviewed p.I1912L 1.000 15 0% 92 46.7% 18 55.5% benign(0.017) tolerated(0.15) neutral(0.241) HMMPfam_VBS GBA2 57704 genome.wustl.edu 37 9 35738217 35738217 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000378088 -1 known p.G11 0.000 58 0% 174 41.4% 23 56.5% - - - NULL GNE 10020 genome.wustl.edu 37 9 36219883 36219883 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001128227.1 -1 reviewed p.Y621D 1.000 36 0% 103 49.5% 1 0% possibly_damaging(0.807) deleterious(0) deleterious(0.748) HMMPfam_ROK,superfamily_SSF53067 GNE 10020 genome.wustl.edu 37 9 36223467 36223467 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001128227.1 -1 reviewed p.N469 1.000 170 0% 129 16.3% 2 0% - - - HMMPfam_ROK,superfamily_SSF53067 RNF38 152006 genome.wustl.edu 37 9 36357786 36357786 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022781.4 -1 reviewed p.S242G 1.000 17 0% 48 45.8% 5 40% possibly_damaging(0.706) deleterious(0.01) deleterious(0.659) NULL DCAF10 79269 genome.wustl.edu 37 9 37860048 37860048 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024345.3 +1 validated p.V390A 1.000 57 0% 56 42.9% 3 33.3% benign(0.001) tolerated(0.14) neutral(0.249) superfamily_WD40 repeat-like MAMDC2 256691 genome.wustl.edu 37 9 72723296 72723296 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153267.4 +1 validated p.F106 0.303 117 0% 42 52.4% 0 - - - - HMMPfam_MAM,HMMSmart_SM00137 TMC1 117531 genome.wustl.edu 37 9 75406926 75406926 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138691.2 +1 reviewed p.L450P 1.000 267 0% 132 43.2% 0 - possibly_damaging(0.901) tolerated(0.08) deleterious(0.657) NULL TRPM6 140803 genome.wustl.edu 37 9 77455036 77455036 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017662.4 -1 reviewed p.T150A 0.932 115 0.9% 153 41.8% 0 - unknown(0) tolerated(0.46) - NULL C9orf41 138199 genome.wustl.edu 37 9 77598705 77598705 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152420.1 -1 predicted p.F403S 1.000 139 0% 78 47.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_N2227,superfamily_SSF53335 VPS13A 23230 genome.wustl.edu 37 9 80018161 80018161 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033305.2 +1 reviewed p.N3067D 1.000 260 0% 116 50% 4 50% benign(0) deleterious(0) neutral(0.445) NULL KIF27 55582 genome.wustl.edu 37 9 86506303 86506303 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017576.1 -1 provisional p.D572 0.998 194 0% 111 51.4% 0 - - - - NULL FAM75C1 441452 genome.wustl.edu 37 9 90535941 90535941 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145124.1 +1 validated p.A373 0.011 55 0% 156 44.2% 0 - - - - NULL FAM75C1 441452 genome.wustl.edu 37 9 90538261 90538261 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145124.1 +1 validated p.R1147W 0.000 88 0% 219 45.2% 0 - - - - NULL NFIL3 4783 genome.wustl.edu 37 9 94171799 94171799 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005384.2 -1 validated p.K406 0.926 102 0% 244 45.5% 11 45.4% - - - HMMPfam_Vert_IL3-reg_TF CENPP 401541 genome.wustl.edu 37 9 95374861 95374862 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001012267.1 +1 validated p.L236fs 0.956:0.228 - - - - - - - - - NULL PHF2 5253 genome.wustl.edu 37 9 96437249 96437249 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005392.3 +1 reviewed p.F889 1.000 31 0% 92 43.5% 9 55.5% - - - NULL FBP2 8789 genome.wustl.edu 37 9 97346904 97346904 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003837.2 -1 reviewed p.I127 0.389 67 0% 143 36.4% 0 - - - - HMMPfam_FBPase,superfamily_SSF56655 C9orf3 84909 genome.wustl.edu 37 9 97535336 97535336 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032823.3 +1 provisional p.C284R 1.000 59 0% 95 50.5% 0 - possibly_damaging(0.449) deleterious(0) deleterious(0.592) superfamily_SSF63737 C9orf102 375748 genome.wustl.edu 37 9 98684692 98684692 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001010895.2 +1 validated p.K480E 0.995 64 0% 71 45.1% 0 - possibly_damaging(0.541) tolerated(0.76) neutral(0.184) NULL C9orf174 100499483 genome.wustl.edu 37 9 100082479 100082479 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020893.1 +1 predicted p.K567R 0.903 75 0% 92 43.5% 4 50% unknown(0) deleterious(0.03) - NULL NCBP1 4686 genome.wustl.edu 37 9 100403116 100403116 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002486.4 +1 reviewed p.N25 0.999 109 0% 121 45.5% 0 - - - - NULL NR4A3 8013 genome.wustl.edu 37 9 102606981 102606981 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173200.1 +1 reviewed p.Q446 0.997 68 0% 59 45.8% 0 - - - - superfamily_Str_ncl_receptor TEX10 54881 genome.wustl.edu 37 9 103109156 103109156 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017746.3 -1 validated p.L238S 1.000 96 0% 156 41.7% 0 - possibly_damaging(0.703) deleterious(0.01) deleterious(0.658) NULL CYLC2 1539 genome.wustl.edu 37 9 105767096 105767096 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001340.3 +1 reviewed p.K100N 0.020 98 0% 80 38.8% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL ABCA1 19 genome.wustl.edu 37 9 107646735 107646735 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005502.2 -1 reviewed p.G92E 1.000 83 0% 80 53.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL KLF4 9314 genome.wustl.edu 37 9 110249589 110249589 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004235.4 -1 validated p.P362 0.948 27 0% 142 47.2% 1 100% - - - NULL EPB41L4B 54566 genome.wustl.edu 37 9 112013779 112013779 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019114.3 -1 validated p.V431A 0.998 58 0% 72 9.7% 4 0% benign(0.104) tolerated(0.34) neutral(0.031) NULL MUSK 4593 genome.wustl.edu 37 9 113547199 113547199 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005592.3 +1 reviewed p.I497V 0.999 256 0% 296 45.6% 0 - probably_damaging(0.975) tolerated(0.14) deleterious(0.666) NULL MUSK 4593 genome.wustl.edu 37 9 113562624 113562624 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005592.3 +1 reviewed p.E656* 1.000 29 0% 76 47.4% 0 - - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) PTGR1 22949 genome.wustl.edu 37 9 114348403 114348403 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012212.3 -1 reviewed p.I84 0.104 51 0% 98 43.9% 36 91.6% - - - superfamily_GroES_like ENSG00000221734 0 genome.wustl.edu 37 9 117554487 117554487 + RNA SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000408807 +1 novel NULL 0.001 104 0% 31 48.4% 0 - - - - - TNC 3371 genome.wustl.edu 37 9 117849490 117849490 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002160.2 -1 validated p.C174G 1.000 11 0% 28 39.3% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_EGF_1,PatternScan_EGF_2 FBXW2 26190 genome.wustl.edu 37 9 123526990 123526990 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012164.3 -1 reviewed p.P404 0.989 32 0% 73 49.3% 34 47% - - - superfamily_WD40 repeat-like PSMD5 5711 genome.wustl.edu 37 9 123586876 123586876 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005047.2 -1 reviewed p.F301S 1.000 97 0% 60 38.3% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB CNTRL 11064 genome.wustl.edu 37 9 123927284 123927284 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007018.4 +1 reviewed p.L1829F 0.006 86 0% 54 9.3% 5 0% possibly_damaging(0.775) tolerated(0.14) deleterious(0.538) superfamily_tRNA-binding arm OR1Q1 158131 genome.wustl.edu 37 9 125377621 125377621 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012364.1 +1 provisional p.E202G 0.714 58 0% 79 44.3% 0 - probably_damaging(1) tolerated(0.24) deleterious(0.537) HMMPfam_7tm_1,superfamily_SSF81321 RABGAP1 23637 genome.wustl.edu 37 9 125746950 125746950 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012197.3 +1 validated p.G113R 1.000 42 2.4% 41 39% 3 66.6% probably_damaging(0.991) tolerated(0.79) neutral(0.445) NULL DENND1A 57706 genome.wustl.edu 37 9 126143797 126143797 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020946.1 -1 validated p.K982E 1.000 7 0.000 75 0.440 6 16.6% probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL GPR144 347088 genome.wustl.edu 37 9 127216355 127216355 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000334810 +1 known p.F353V 0.977 9 0.000 15 0.267 0 - possibly_damaging(0.947) deleterious(0) deleterious(0.835) NULL GOLGA1 2800 genome.wustl.edu 37 9 127644802 127644802 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002077.3 -1 reviewed p.L651R 1.000 12 0% 41 36.6% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GAPVD1 26130 genome.wustl.edu 37 9 128104530 128104530 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015635.2 +1 validated p.E1027* 1.000 118 0% 101 43.6% 0 - - - - NULL STXBP1 6812 genome.wustl.edu 37 9 130438143 130438143 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003165.3 +1 reviewed p.V391I 1.000 54 0% 110 46.4% 1 100% possibly_damaging(0.71) tolerated(0.06) deleterious(0.579) HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins ENG 2022 genome.wustl.edu 37 9 130581107 130581107 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001114753.1 -1 reviewed p.K439R 0.001 38 0% 108 38% 68 17.6% possibly_damaging(0.81) tolerated(0.2) neutral(0.354) HMMPfam_Zona_pellucida SLC25A25 114789 genome.wustl.edu 37 9 130865958 130865958 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001006641.1 +1 validated e5-2 1.000 45 0% 98 52% 1 100% - - - - FAM73B 84895 genome.wustl.edu 37 9 131823625 131823625 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032809.2 +1 predicted p.R337K 1.000 9 0.000 47 0.447 6 33.3% probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_DUF2217 TTF1 7270 genome.wustl.edu 37 9 135275576 135275576 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007344.2 -1 validated p.A479 0.004 42 0% 123 35% 0 - - - - NULL CEL 1056 genome.wustl.edu 37 9 135942540 135942540 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001807.3 +1 reviewed p.T284 0.087 18 0% 117 29.9% 7 42.8% - - - HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases ADAMTS13 11093 genome.wustl.edu 37 9 136321196 136321196 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_139025.3 +1 reviewed p.C1192R 0.989 6 0.000 41 0.415 9 33.3% probably_damaging(1) deleterious(0.04) deleterious(0.849) superfamily_Spermadhesin CUB domain WDR5 11091 genome.wustl.edu 37 9 137021645 137021645 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017588.2 +1 reviewed p.S278 0.025 100 0% 261 39.5% 11 54.5% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 COL5A1 1289 genome.wustl.edu 37 9 137620561 137620561 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000093.3 +1 reviewed p.P278T 1.000 26 0% 88 26.1% 0 - unknown(0) tolerated(0.8) - NULL COL5A1 1289 genome.wustl.edu 37 9 137717703 137717703 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000093.3 +1 reviewed p.T1674A 1.000 23 0% 83 44.6% 6 0% unknown(0) deleterious(0) - HMMPfam_COLFI,HMMSmart_COLFI CAMSAP1 157922 genome.wustl.edu 37 9 138774830 138774830 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015447.3 -1 validated p.S85 0.931 26 0% 69 47.8% 2 100% - - - NULL SNAPC4 6621 genome.wustl.edu 37 9 139272727 139272727 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003086.2 -1 validated p.I1184M 0.000 9 0.000 25 0.320 22 54.5% benign(0.354) deleterious(0) deleterious(0.556) NULL PMPCA 23203 genome.wustl.edu 37 9 139316428 139316428 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015160.1 +1 provisional p.R470C 1.000 5 0.000 30 0.467 52 38.4% probably_damaging(0.984) deleterious(0) deleterious(0.875) superfamily_LuxS/MPP-like metallohydrolase FBXW5 54461 genome.wustl.edu 37 9 139836644 139836644 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018998.2 -1 reviewed p.Q317P 0.000 19 0% 92 47.8% 78 39.7% benign(0) tolerated(0.27) neutral(0.034) superfamily_WD40 repeat-like NDOR1 27158 genome.wustl.edu 37 9 140110730 140110730 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001144027.1 +1 reviewed p.P511L 1.000 13 0% 45 42.2% 18 33.3% benign(0.004) - - NULL ENTPD8 377841 genome.wustl.edu 37 9 140329717 140329717 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001033113.1 -1 validated p.L412P 0.395 5 0.000 43 0.465 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GDA1_CD39 EHMT1 79813 genome.wustl.edu 37 9 140611199 140611199 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024757.4 +1 reviewed p.L63P 0.001 25 0% 76 50% 8 25% - - - NULL IDI2-AS1 55853 genome.wustl.edu 37 10 1089833 1089833 + RNA SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NR_024628.1 +1 validated NULL 0.000 73 0% 108 10.2% 3 0% - - - - FAM208B 54906 genome.wustl.edu 37 10 5789920 5789920 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017782.4 +1 validated p.L1512 0.000 49 0% 54 50% 5 100% - - - NULL SFMBT2 57713 genome.wustl.edu 37 10 7285633 7285633 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001029880.1 -1 provisional p.D336G 0.996 35 0% 39 33.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT FAM107B 83641 genome.wustl.edu 37 10 14572385 14572385 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031453.2 -1 predicted p.K200I 1.000 137 0% 123 46.3% 3 0% possibly_damaging(0.896) deleterious(0) deleterious(0.798) HMMPfam_DUF1151 PTER 9317 genome.wustl.edu 37 10 16526598 16526598 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001001484.1 +1 validated p.Q72R 0.025 75 0% 52 38.5% 0 - benign(0) tolerated(0.72) neutral(0.002) HMMPfam_PTE,superfamily_Metallo-dependent hydrolases PTPLA 9200 genome.wustl.edu 37 10 17641288 17641288 + Splice_Site SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014241.3 -1 reviewed e5+1 1.000 57 0% 65 33.8% 0 - - - - - NEBL 10529 genome.wustl.edu 37 10 21139352 21139352 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006393.2 -1 reviewed p.S363* 1.000 316 0% 170 38.8% 0 - - - - HMMPfam_Nebulin,HMMSmart_SM00227 SPAG6 9576 genome.wustl.edu 37 10 22653836 22653836 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012443.2 +1 reviewed p.Q59R 1.000 59 0% 66 39.4% 0 - benign(0.011) deleterious(0.03) neutral(0.365) HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat PTF1A 256297 genome.wustl.edu 37 10 23482774 23482774 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178161.2 +1 reviewed p.L309P 1.000 54 0% 184 37% 0 - probably_damaging(0.99) tolerated(0.07) deleterious(0.760) NULL KIAA1217 56243 genome.wustl.edu 37 10 24762554 24762554 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019590.3 +1 validated p.L415P 0.015 18 0% 19 52.6% 2 100% benign(0.039) tolerated(0.08) neutral(0.302) NULL PRTFDC1 56952 genome.wustl.edu 37 10 25226158 25226158 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020200.5 -1 provisional p.R98 0.009 102 0% 91 46.2% 6 16.6% - - - HMMPfam_Pribosyltran,superfamily_PRTase-like MYO3A 53904 genome.wustl.edu 37 10 26286128 26286128 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017433.4 +1 reviewed p.D150G 1.000 155 0% 56 50% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase MASTL 84930 genome.wustl.edu 37 10 27459916 27459916 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032844.3 +1 reviewed p.T676 0.953 124 0% 84 31% 6 0% - - - superfamily_Kinase_like MASTL 84930 genome.wustl.edu 37 10 27459939 27459939 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032844.3 +1 reviewed p.S684L 0.995 117 0% 70 51.4% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Kinase_like PTCHD3 374308 genome.wustl.edu 37 10 27687530 27687530 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001034842.3 -1 validated p.D666G 0.000 183 0% 97 50.5% 0 - benign(0.311) deleterious(0.04) neutral(0.446) HMMPfam_Patched LYZL1 84569 genome.wustl.edu 37 10 29580824 29580824 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032517.4 +1 validated p.I56V 0.343 35 2.9% 64 29.7% 0 - benign(0) tolerated(0.79) neutral(0.001) NULL KIAA1462 57608 genome.wustl.edu 37 10 30318028 30318028 + Missense_Mutation SNP G G A rs182760536 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020848.2 -1 validated p.P350L 0.993 45 0% 72 50% 0 - benign(0.095) deleterious(0) neutral(0.452) NULL KIF5B 3799 genome.wustl.edu 37 10 32311825 32311825 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004521.2 -1 validated p.M622T 1.000 296 0% 269 44.6% 6 33.3% benign(0.011) tolerated(0.15) neutral(0.241) NULL LOC646360 646360 genome.wustl.edu 37 10 37626619 37626619 + RNA SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XR_078419.1 +1 model NULL 1.000 273 0% 157 44.6% 0 - - - - - ZNF32 7580 genome.wustl.edu 37 10 44139506 44139506 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005368.1 -1 validated p.T272A 1.000 21 0% 84 44% 104 39.4% unknown(0) deleterious(0) - NULL C10orf10 11067 genome.wustl.edu 37 10 45472880 45472880 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007021.3 -1 reviewed p.R200I 0.004 4 0.000 35 0.457 5 0% probably_damaging(0.96) tolerated(0.11) deleterious(0.675) NULL FAM170B 170370 genome.wustl.edu 37 10 50340213 50340213 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000311787 -1 known p.D99 0.011 13 0% 36 58.3% 0 - - - - NULL FAM21A 387680 genome.wustl.edu 37 10 51889703 51889703 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005751.1 +1 validated p.D1204 0.997 252 0% 150 39.3% 12 41.6% - - - NULL PCDH15 65217 genome.wustl.edu 37 10 56089359 56089359 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142763.1 -1 reviewed p.A239 0.824 201 0% 55 54.5% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like ANK3 288 genome.wustl.edu 37 10 61833754 61833754 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020987.2 -1 reviewed p.E2295 0.983 120 0% 80 53.7% 0 - - - - NULL ANK3 288 genome.wustl.edu 37 10 61835126 61835126 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020987.2 -1 reviewed p.K1838R 1.000 75 0% 60 43.3% 0 - possibly_damaging(0.892) - - NULL ANK3 288 genome.wustl.edu 37 10 62038908 62038908 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020987.2 -1 reviewed e3-2 1.000 47 0% 28 39.3% 0 - - - - - ARID5B 84159 genome.wustl.edu 37 10 63810764 63810764 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000456911 +1 known p.R284L 0.004 89 0% 34 64.7% 0 - - - - NULL ARID5B 84159 genome.wustl.edu 37 10 63851453 63851453 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032199.2 +1 validated p.M744R 0.763 74 0% 66 40.9% 3 33.3% benign(0.005) deleterious(0.02) neutral(0.383) NULL ARID5B 84159 genome.wustl.edu 37 10 63852147 63852147 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032199.2 +1 validated p.S975 0.016 17 0% 35 48.6% 2 0% - - - NULL RTKN2 219790 genome.wustl.edu 37 10 63957867 63957867 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145307.2 -1 provisional p.K544E 0.989 252 0% 171 45.6% 0 - benign(0.309) deleterious(0.01) deleterious(0.502) NULL JMJD1C 221037 genome.wustl.edu 37 10 64973314 64973314 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032776.1 -1 validated p.H871 1.000 92 0% 95 44.2% 1 0% - - - NULL SIRT1 23411 genome.wustl.edu 37 10 69669102 69669102 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142498.1 +1 reviewed p.E125 1.000 105 0% 87 46% 4 50% - - - HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain DNA2 1763 genome.wustl.edu 37 10 70209804 70209804 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080449.1 -1 provisional p.S393Y 1.000 200 0% 142 48.6% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL TET1 80312 genome.wustl.edu 37 10 70405569 70405569 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030625.2 +1 validated p.L1028H 0.238 113 0% 74 51.4% 0 - benign(0.267) deleterious(0.01) neutral(0.434) NULL DDX50 79009 genome.wustl.edu 37 10 70706331 70706331 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024045.1 +1 reviewed p.R720L 1.000 24 0% 45 40% 95 46.3% unknown(0) deleterious(0.04) - NULL PPA1 5464 genome.wustl.edu 37 10 71969379 71969379 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021129.3 -1 reviewed p.R192W 1.000 163 0% 162 49.4% 127 39.3% benign(0.006) tolerated(0.2) neutral(0.049) HMMPfam_Pyrophosphatase,superfamily_Pyrophosphatase KIAA1274 27143 genome.wustl.edu 37 10 72294269 72294269 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014431.2 +1 validated p.M371V 1.000 39 0% 94 38.3% 4 25% benign(0) tolerated(1) - NULL CDH23 64072 genome.wustl.edu 37 10 73455245 73455245 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022124.5 +1 reviewed p.L787P 1.000 29 0% 91 39.6% 0 - probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMPfam_Cadherin,superfamily_Cadherin-like VCL 7414 genome.wustl.edu 37 10 75843245 75843245 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014000.2 +1 reviewed p.T332 0.995 46 0% 39 38.5% 2 50% - - - HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin SFTPD 6441 genome.wustl.edu 37 10 81706323 81706323 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003019.4 -1 validated p.M31I 0.000 38 0% 55 50.9% 0 - benign(0) - - NULL FAM190B 54462 genome.wustl.edu 37 10 86131069 86131069 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018999.2 +1 validated p.N87K 0.672 84 0% 52 38.5% 0 - benign(0.006) tolerated(0.93) - NULL PTEN 5728 genome.wustl.edu 37 10 89717672 89717672 + Nonsense_Mutation SNP C C T rs121909219 byCluster TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000371953 +1 known p.R233* 0.984 108 0% 83 55.4% 18 11.1% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 IFIT3 3437 genome.wustl.edu 37 10 91099718 91099718 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001031683.2 +1 validated p.K436E 0.240 54 0% 40 42.5% 14 50% benign(0) tolerated(1) - HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like HECTD2 143279 genome.wustl.edu 37 10 93242744 93242744 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182765.3 +1 validated p.T244 1.000 49 0% 91 51.6% 2 0% - - - NULL BTAF1 9044 genome.wustl.edu 37 10 93740313 93740313 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003972.2 +1 validated p.K585E 1.000 179 0% 172 45.9% 3 0% benign(0.01) tolerated(0.63) neutral(0.004) superfamily_ARM repeat MYOF 26509 genome.wustl.edu 37 10 95076507 95076507 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013451.3 -1 reviewed p.W1888R 1.000 111 0% 120 38.3% 39 51.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) MYOF 26509 genome.wustl.edu 37 10 95163954 95163954 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013451.3 -1 reviewed p.M251T 0.984 81 0% 41 22% 1 100% benign(0.002) tolerated(0.39) neutral(0.016) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) PLCE1 51196 genome.wustl.edu 37 10 96005707 96005707 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016341.3 +1 reviewed p.I809L 0.990 15 0% 27 33.3% 0 - benign(0.019) deleterious(0.04) neutral(0.350) HMMSmart_SM00147,superfamily_Ras GEF CYP2C18 1562 genome.wustl.edu 37 10 96493102 96493102 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000772.2 +1 reviewed p.E400* 0.540 212 0% 130 47.7% 0 - - - - HMMPfam_p450,superfamily_Cytochrome P450 CYP2C9 1559 genome.wustl.edu 37 10 96702070 96702070 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000771.3 +1 reviewed p.C151 0.790 123 0% 146 40.4% 0 - - - - HMMPfam_p450,superfamily_Cytochrome P450 C10orf12 26148 genome.wustl.edu 37 10 98743747 98743747 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015652.2 +1 predicted p.N867S 0.915 58 0% 52 40.4% 1 0% benign(0.425) tolerated(0.09) neutral(0.434) NULL C10orf28 27291 genome.wustl.edu 37 10 99968339 99968339 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014472.4 +1 validated p.T156 0.018 107 0% 47 36.2% 0 - - - - NULL ABCC2 1244 genome.wustl.edu 37 10 101603601 101603601 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000392.3 +1 reviewed p.E1263* 1.000 123 0% 339 41.6% 0 - - - - superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain HIF1AN 55662 genome.wustl.edu 37 10 102296357 102296357 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017902.2 +1 validated p.M123V 1.000 76 0% 116 50.9% 1 0% benign(0) tolerated(0.66) neutral(0.003) superfamily_SSF51197 SFXN3 81855 genome.wustl.edu 37 10 102795329 102795329 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030971.3 +1 validated p.H83 0.989 12 0% 55 45.5% 4 0% - - - HMMPfam_Mtc HPS6 79803 genome.wustl.edu 37 10 103826899 103826899 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024747.4 +1 reviewed p.E556 0.026 4 0.000 29 0.517 18 50% - - - NULL PSD 5662 genome.wustl.edu 37 10 104164680 104164680 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002779.3 -1 provisional p.W844R 1.000 5 0.000 49 0.571 6 0% probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like CYP17A1 1586 genome.wustl.edu 37 10 104597099 104597099 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000102.3 -1 reviewed p.L7P 0.006 25 0% 38 26.3% 0 - possibly_damaging(0.873) deleterious(0.01) deleterious(0.745) NULL SLK 9748 genome.wustl.edu 37 10 105762303 105762303 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014720.2 +1 provisional p.M456T 0.000 109 0% 67 35.8% 0 - benign(0.039) tolerated(0.43) neutral(0.015) superfamily_Protein kinase-like (PK-like) WDR96 80217 genome.wustl.edu 37 10 105903311 105903311 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025145.5 -1 provisional p.A1344D 0.000 117 0% 82 35.4% 1 100% benign(0.017) tolerated(0.7) neutral(0.003) superfamily_WD40 repeat-like TCF7L2 6934 genome.wustl.edu 37 10 114911632 114911632 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030756.4 +1 reviewed p.L361F 1.000 58 0% 48 47.9% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box TDRD1 56165 genome.wustl.edu 37 10 115962035 115962035 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198795.1 +1 reviewed p.K225T 0.967 414 0% 122 44.3% 0 - probably_damaging(0.977) tolerated(0.5) neutral(0.429) NULL AFAP1L2 84632 genome.wustl.edu 37 10 116056818 116056818 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001001936.1 -1 validated p.P783 0.028 67 0% 164 44.5% 3 33.3% - - - NULL ABLIM1 3983 genome.wustl.edu 37 10 116361699 116361699 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002313.5 -1 reviewed p.H89R 1.000 37 0% 51 47.1% 0 - benign(0.397) tolerated(0.29) neutral(0.157) superfamily_Glucocorticoid receptor-like (DNA-binding domain) HSPA12A 259217 genome.wustl.edu 37 10 118435948 118435948 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025015.2 -1 validated p.L451R 1.000 34 0% 104 28.8% 9 11.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF53067 KCNK18 338567 genome.wustl.edu 37 10 118969619 118969619 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181840.1 +1 provisional p.T322A 1.000 295 0% 284 47.5% 0 - probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMPfam_Ion_trans_2,superfamily_SSF81324 DMBT1 1755 genome.wustl.edu 37 10 124392751 124392751 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007329.2 +1 reviewed p.F2019L 0.406 40 0% 113 53.1% 4 50% probably_damaging(0.987) tolerated(0.09) deleterious(0.733) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain C10orf137 26098 genome.wustl.edu 37 10 127429069 127429069 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015608.2 +1 validated p.S639 0.999 110 0% 90 46.7% 5 60% - - - NULL BCCIP 56647 genome.wustl.edu 37 10 127516130 127516130 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016567.3 +1 reviewed p.F82V 1.000 181 0% 193 42% 13 61.5% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL MKI67 4288 genome.wustl.edu 37 10 129901658 129901658 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002417.4 -1 reviewed p.T2816A 0.000 193 0% 198 45.5% 0 - possibly_damaging(0.936) tolerated(0.1) deleterious(0.668) NULL STK32C 282974 genome.wustl.edu 37 10 134038821 134038821 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173575.2 -1 reviewed p.S264 0.992 13 0% 64 43.8% 1 0% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase NKX6-2 84504 genome.wustl.edu 37 10 134598513 134598513 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_177400.2 -1 validated p.D247 1.000 17 0% 110 36.4% 0 - - - - NULL TTC40 54777 genome.wustl.edu 37 10 134648919 134648919 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000368586 -1 known p.R2211 0.863 5 0.000 22 0.591 0 - - - - NULL GPR123 84435 genome.wustl.edu 37 10 134895364 134895364 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000392609 +1 known p.S157F 0.000 11 0% 55 52.7% 0 - unknown(0) - - NULL KNDC1 85442 genome.wustl.edu 37 10 135020767 135020767 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152643.6 +1 validated p.N1236D 1.000 5 0.000 26 0.462 0 - benign(0.001) deleterious(0.03) neutral(0.364) superfamily_Ras GEF ECHS1 1892 genome.wustl.edu 37 10 135176419 135176419 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004092.3 -1 reviewed p.M276V 1.000 92 0% 237 36.7% 362 50.5% possibly_damaging(0.914) deleterious(0) deleterious(0.810) superfamily_SSF52096 B4GALNT4 338707 genome.wustl.edu 37 11 373207 373207 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178537.4 +1 validated p.S184 0.055 16 0% 86 40.7% 7 71.4% - - - HMMPfam_PA14,HMMSmart_PA14 PKP3 11187 genome.wustl.edu 37 11 404048 404048 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007183.2 +1 reviewed p.L728P 1.000 10 0% 44 36.4% 175 30.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM-type_fold KRTAP5-6 440023 genome.wustl.edu 37 11 1718669 1718669 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001012416.1 +1 validated p.G65D 0.232 23 0% 132 49.2% 0 - unknown(0) tolerated(0.13) - PatternScan_VWFC_1 CHRNA10 57053 genome.wustl.edu 37 11 3691139 3691139 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020402.2 -1 provisional p.K32E 1.000 35 0% 150 42% 0 - possibly_damaging(0.875) deleterious(0.02) deleterious(0.723) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD NUP98 4928 genome.wustl.edu 37 11 3726556 3726556 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016320.4 -1 reviewed p.E986K 1.000 157 0% 90 41.1% 3 66.6% benign(0.05) deleterious(0) neutral(0.448) NULL OR51F2 119694 genome.wustl.edu 37 11 4843534 4843534 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004753.1 +1 provisional p.S307G 0.998 118 0% 103 34% 0 - possibly_damaging(0.631) tolerated(0.32) neutral(0.244) superfamily_SSF81321 TRIM6-TRIM34 445372 genome.wustl.edu 37 11 5626774 5626774 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001003819.2 +1 reviewed p.G271R 0.998 27 0% 71 49.3% 0 - probably_damaging(1) tolerated(0.19) deleterious(0.549) NULL TRIM22 10346 genome.wustl.edu 37 11 5730452 5730452 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006074.3 +1 reviewed p.W357* 1.000 162 0% 116 46.6% 36 30.5% - - - HMMPfam_SPRY,HMMSmart_SM00449 OR56A5 390084 genome.wustl.edu 37 11 5989423 5989423 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002343047.1 -1 model p.F101S 0.997 57 0% 121 45.5% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 SMPD1 6609 genome.wustl.edu 37 11 6414846 6414846 + Splice_Site SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000543.3 +1 reviewed e4-1 1.000 36 0% 142 44.4% 1 100% - - - - TPP1 1200 genome.wustl.edu 37 11 6638262 6638262 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000391.3 -1 reviewed p.L211 0.996 38 0% 199 51.3% 4 75% - - - superfamily_Subtilisin-like TPP1 1200 genome.wustl.edu 37 11 6640116 6640116 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000391.3 -1 reviewed p.R40 0.940 19 0% 58 43.1% 1 0% - - - superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ OR2D2 120776 genome.wustl.edu 37 11 6913501 6913501 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003700.1 -1 provisional p.I77M 0.000 70 0% 66 42.4% 0 - possibly_damaging(0.753) tolerated(0.1) deleterious(0.563) HMMPfam_7tm_1,superfamily_SSF81321 AKIP1 56672 genome.wustl.edu 37 11 8938869 8938869 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020642.3 +1 validated p.G148 0.085 85 0% 95 37.9% 22 27.2% - - - NULL DENND5A 23258 genome.wustl.edu 37 11 9225325 9225325 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015213.2 -1 validated p.N277K 0.990 28 0% 38 55.3% 0 - benign(0.01) tolerated(0.41) neutral(0.015) HMMPfam_DENN,HMMSmart_SM00799 IPO7 10527 genome.wustl.edu 37 11 9457907 9457907 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006391.2 +1 reviewed p.I754 1.000 83 0% 148 50% 15 60% - - - superfamily_ARM-type_fold IPO7 10527 genome.wustl.edu 37 11 9459506 9459506 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006391.2 +1 reviewed p.V825A 1.000 213 0% 134 44.8% 8 50% benign(0.001) tolerated(0.39) neutral(0.016) superfamily_ARM-type_fold SBF2 81846 genome.wustl.edu 37 11 9810727 9810727 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030962.3 -1 reviewed p.R1621 1.000 37 0% 60 36.7% 6 50% - - - NULL GALNTL4 374378 genome.wustl.edu 37 11 11292835 11292835 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198516.2 -1 validated p.G560 1.000 12 0% 25 40% 6 16.6% - - - HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins MICAL2 9645 genome.wustl.edu 37 11 12244956 12244956 + Splice_Site SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014632.2 +1 provisional e10-2 0.998 33 0% 65 46.2% 0 - - - - - PIK3C2A 5286 genome.wustl.edu 37 11 17170313 17170313 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002645.2 -1 validated p.I450T 0.990 134 0% 77 53.2% 3 100% benign(0.052) deleterious(0.01) neutral(0.409) HMMPfam_PI3K_rbd,HMMSmart_SM00144,superfamily_Ubiquitin-like GTF2H1 2965 genome.wustl.edu 37 11 18362806 18362806 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142307.1 +1 validated e5-2 1.000 72 0% 92 50% 0 - - - - - LDHAL6A 160287 genome.wustl.edu 37 11 18499244 18499244 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001144071.1 +1 validated p.I263S 1.000 216 0% 153 48.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C NAV2 89797 genome.wustl.edu 37 11 19955752 19955752 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182964.5 +1 validated p.S654 0.999 25 0% 51 49% 2 50% - - - NULL LGR4 55366 genome.wustl.edu 37 11 27393235 27393235 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018490.2 -1 validated p.D502 0.000 182 0% 136 40.4% 1 100% - - - NULL LIN7C 55327 genome.wustl.edu 37 11 27520226 27520226 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018362.3 -1 validated p.M188I 1.000 277 0% 245 38% 1 0% benign(0.018) tolerated(0.17) neutral(0.059) superfamily_PDZ domain-like DCDC1 341019 genome.wustl.edu 37 11 31327912 31327912 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181807.2 -1 validated p.K153R 1.000 136 0% 65 41.5% 0 - possibly_damaging(0.494) tolerated(0.26) neutral(0.199) NULL ELP4 26610 genome.wustl.edu 37 11 31625362 31625362 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019040.3 +1 reviewed p.S187 1.000 146 0% 87 48.3% 4 50% - - - HMMPfam_PAXNEB CAPRIN1 4076 genome.wustl.edu 37 11 34118181 34118181 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005898.4 +1 validated p.L621 1.000 21 0% 76 48.7% 42 33.3% - - - NULL ELF5 2001 genome.wustl.edu 37 11 34504029 34504029 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198381.1 -1 reviewed p.L152V 1.000 150 0% 87 47.1% 0 - benign(0.011) tolerated(0.67) neutral(0.003) NULL RAG2 5897 genome.wustl.edu 37 11 36614195 36614195 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000536.3 -1 reviewed p.K508 0.882 143 0% 128 37.5% 0 - - - - HMMPfam_RAG2 ALX4 60529 genome.wustl.edu 37 11 44297011 44297011 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021926.3 -1 reviewed p.T222A 1.000 20 0% 100 48% 0 - benign(0.006) deleterious(0.04) neutral(0.349) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like CHST1 8534 genome.wustl.edu 37 11 45671611 45671611 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003654.4 -1 validated p.M288T 0.052 8 0.000 31 0.516 13 0% benign(0) tolerated(0.59) neutral(0.004) HMMPfam_Sulfotransfer_1,superfamily_SSF52540 CHRM4 1132 genome.wustl.edu 37 11 46407153 46407153 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000741.2 -1 reviewed p.T319A 0.732 33 0% 147 42.2% 0 - benign(0.031) tolerated(0.56) neutral(0.008) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CKAP5 9793 genome.wustl.edu 37 11 46839958 46839958 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001008938.1 -1 validated p.L52M 0.998 121 0% 133 44.4% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_ARM repeat C11orf49 79096 genome.wustl.edu 37 11 47183135 47183135 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001003677.1 +1 validated p.K320 0.995 12 0% 20 60% 52 32.6% - - - NULL MADD 8567 genome.wustl.edu 37 11 47299761 47299761 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003682.3 +1 reviewed p.F381L 1.000 92 0% 213 42.7% 1 100% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_DENN,HMMSmart_SM00799 FNBP4 23360 genome.wustl.edu 37 11 47765619 47765619 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015308.2 -1 validated p.R448G 1.000 154 0% 171 45% 8 62.5% probably_damaging(0.998) tolerated(0.18) deleterious(0.530) NULL NUP160 23279 genome.wustl.edu 37 11 47825013 47825013 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015231.1 -1 validated p.L918 1.000 268 0% 149 48.3% 1 100% - - - NULL OR4S1 256148 genome.wustl.edu 37 11 48328456 48328456 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004725.1 +1 provisional p.S228P 0.025 65 0% 110 40% 0 - benign(0) deleterious(0.05) neutral(0.345) HMMPfam_7tm_1,superfamily_SSF81321 OR4C3 256144 genome.wustl.edu 37 11 48346855 48346855 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004702.1 +1 provisional p.C121* 0.000 175 0% 130 23.8% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SERPING1 710 genome.wustl.edu 37 11 57381833 57381833 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000062.2 +1 reviewed p.C428R 1.000 78 0% 60 35% 1347 49.6% probably_damaging(1) tolerated(0.38) deleterious(0.517) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin TMX2 51075 genome.wustl.edu 37 11 57506177 57506177 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015959.2 +1 validated p.E161D 0.998 153 0% 269 45.4% 11 45.4% unknown(0) - - superfamily_Thioredoxin-like,HMMPfam_Thioredoxin ZFP91 80829 genome.wustl.edu 37 11 58380260 58380260 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_053023.3 +1 reviewed p.R312S 1.000 113 0% 77 49.4% 5 40% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers LOC643637 643637 genome.wustl.edu 37 11 58811011 58811011 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002343101.1 +1 model p.P70 0.364 66 0% 104 24% 0 - - - - HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat) FAM111A 63901 genome.wustl.edu 37 11 58919517 58919517 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142519.1 +1 validated p.M126V 0.850 78 0% 104 46.2% 7 42.8% benign(0.117) tolerated(0.07) neutral(0.329) NULL MS4A10 341116 genome.wustl.edu 37 11 60557936 60557936 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_206893.3 +1 validated p.A43V 0.008 29 0% 39 56.4% 0 - benign(0.001) tolerated(0.24) neutral(0.037) NULL GANAB 23193 genome.wustl.edu 37 11 62400063 62400063 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198335.2 -1 validated p.D346N 1.000 11 0% 61 39.3% 13 53.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL INTS5 80789 genome.wustl.edu 37 11 62414643 62414643 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030628.1 -1 provisional p.I970S 1.000 13 0% 73 39.7% 70 54.2% benign(0.01) tolerated(0.08) neutral(0.300) NULL SLC22A24 283238 genome.wustl.edu 37 11 62863511 62863511 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136506.1 -1 validated p.F341Y 0.005 78 0% 74 13.5% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_MFS_1,superfamily_MFS general substrate transporter RTN3 10313 genome.wustl.edu 37 11 63449116 63449116 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_201428.1 +1 validated p.E3G 1.000 7 0.000 32 0.469 7 42.8% unknown(0) deleterious(0.01) - NULL MARK2 2011 genome.wustl.edu 37 11 63663107 63663107 + Splice_Site SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001039469.2 +1 reviewed e2+2 1.000 61 0% 141 48.2% 1 100% - - - - FLRT1 23769 genome.wustl.edu 37 11 63884535 63884535 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013280.4 +1 reviewed p.N266H 0.994 14 0% 19 42.1% 0 - probably_damaging(0.991) tolerated(0.08) deleterious(0.744) HMMSmart_SM00369,superfamily_L domain-like VEGFB 7423 genome.wustl.edu 37 11 64003732 64003732 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003377.3 +1 provisional p.M103L 1.000 57 0% 180 41.7% 149 38.2% possibly_damaging(0.612) deleterious(0.01) deleterious(0.618) HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines GPR137 56834 genome.wustl.edu 37 11 64054021 64054021 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020155.3 +1 validated p.V9L 1.000 15 0% 74 36.5% 16 31.2% benign(0.053) deleterious(0.04) neutral(0.352) NULL ATG2A 23130 genome.wustl.edu 37 11 64678182 64678182 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015104.2 -1 validated e12-2 0.994 7 0.000 68 0.412 0 - - - - - CATSPER1 117144 genome.wustl.edu 37 11 65789294 65789294 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_053054.3 -1 reviewed p.L496 0.001 52 0% 164 40.9% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels RBM4B 83759 genome.wustl.edu 37 11 66436112 66436112 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031492.2 -1 provisional p.R355 1.000 32 0% 61 45.9% 21 42.8% - - - NULL SPTBN2 6712 genome.wustl.edu 37 11 66482823 66482823 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006946.2 -1 reviewed p.N118S 0.996 33 0% 130 42.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain CHKA 1119 genome.wustl.edu 37 11 67837659 67837659 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001277.2 -1 reviewed p.L289P 1.000 101 0% 84 42.9% 29 41.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like) IGHMBP2 3508 genome.wustl.edu 37 11 68703748 68703748 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002180.2 +1 reviewed p.A600 0.001 18 0% 85 44.7% 9 33.3% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases KRTAP5-9 3846 genome.wustl.edu 37 11 71259752 71259752 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005553.3 +1 validated p.C17G 1.000 27 0% 89 50.6% 3 0% unknown(0) tolerated(0.43) - NULL KRTAP5-11 440051 genome.wustl.edu 37 11 71293428 71293428 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005405.2 -1 validated p.C152* 0.998 25 0% 155 47.1% 0 - - - - NULL NUMA1 4926 genome.wustl.edu 37 11 71720095 71720095 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006185.2 -1 validated p.L1659P 1.000 14 0% 48 50% 39 33.3% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL NUMA1 4926 genome.wustl.edu 37 11 71724563 71724563 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006185.2 -1 validated p.L1329S 0.099 9 0.000 18 0.389 45 53.3% probably_damaging(0.981) deleterious(0.04) deleterious(0.774) NULL NUMA1 4926 genome.wustl.edu 37 11 71729440 71729440 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006185.2 -1 validated e9+2 1.000 25 0% 45 46.7% 1 100% - - - - LOC220077 220077 genome.wustl.edu 37 11 71961253 71961253 + RNA SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XR_017002.2 -1 model NULL 1.000 10 0% 38 39.5% 0 - - - - - PDE2A 5138 genome.wustl.edu 37 11 72292949 72292949 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002599.3 -1 validated p.Y632H 1.000 30 0% 172 41.9% 0 - possibly_damaging(0.792) deleterious(0) deleterious(0.742) superfamily_HD-domain/PDEase-like ARHGEF17 9828 genome.wustl.edu 37 11 73076571 73076571 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014786.3 +1 validated p.E1896G 1.000 16 0% 94 39.4% 23 47.8% possibly_damaging(0.947) deleterious(0) deleterious(0.835) superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase SLCO2B1 11309 genome.wustl.edu 37 11 74904550 74904550 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007256.3 +1 validated p.F455L 0.000 16 0% 58 36.2% 0 - benign(0) tolerated(1) - HMMPfam_OATP,superfamily_MFS general substrate transporter ARRB1 408 genome.wustl.edu 37 11 74988472 74988472 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004041.3 -1 validated p.P213 1.000 118 0% 274 37.6% 1 0% - - - HMMPfam_Arrestin_C,superfamily_E set domains WNT11 7481 genome.wustl.edu 37 11 75897990 75897990 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000447195 -1 known p.W214R 0.000 7 0.000 11 0.545 9 44.4% benign(0.001) deleterious(0) neutral(0.445) HMMPfam_wnt,HMMSmart_WNT1 WNT11 7481 genome.wustl.edu 37 11 75902773 75902773 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004626.2 -1 reviewed p.L242R 1.000 10 0% 36 33.3% 8 50% probably_damaging(0.998) tolerated(0.09) deleterious(0.771) HMMPfam_wnt,HMMSmart_WNT1 PRKRIR 5612 genome.wustl.edu 37 11 76063168 76063168 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004705.2 -1 provisional p.V342 0.998 67 0% 57 36.8% 3 33.3% - - - NULL C11orf30 56946 genome.wustl.edu 37 11 76261144 76261144 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020193.3 +1 validated p.D1308G 1.000 57 0% 47 42.6% 5 60% probably_damaging(0.959) deleterious(0) deleterious(0.847) NULL ALG8 79053 genome.wustl.edu 37 11 77832183 77832183 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024079.4 -1 reviewed p.E136* 1.000 297 0% 190 44.7% 3 0% - - - HMMPfam_Alg6_Alg8 ODZ4 26011 genome.wustl.edu 37 11 78369281 78369281 + Missense_Mutation SNP C C T rs148029717 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098816.2 -1 validated p.R2711Q 1.000 30 0% 74 44.6% 0 - probably_damaging(1) tolerated(0.36) deleterious(0.520) NULL PRCP 5547 genome.wustl.edu 37 11 82571083 82571083 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_199418.2 -1 reviewed p.N103S 1.000 240 0% 133 42.1% 3 66.6% benign(0) tolerated(0.89) - HMMPfam_Peptidase_S28,superfamily_SSF53474 RAB30 27314 genome.wustl.edu 37 11 82708321 82708321 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014488.3 -1 provisional p.V13A 1.000 124 0% 121 43.8% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases C11orf73 51501 genome.wustl.edu 37 11 86017481 86017481 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016401.3 +1 validated p.N75 1.000 84 0% 51 43.1% 33 57.5% - - - HMMPfam_DUF775 FAT3 120114 genome.wustl.edu 37 11 92577262 92577262 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001008781.2 +1 validated p.D3577Y 1.000 63 0% 67 50.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like CCDC67 159989 genome.wustl.edu 37 11 93127651 93127651 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181645.3 +1 validated p.E356 1.000 73 0% 77 45.5% 0 - - - - NULL KIAA1731 85459 genome.wustl.edu 37 11 93435968 93435968 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033395.1 +1 validated p.R1827G 0.000 71 0% 75 41.3% 1 0% benign(0.018) tolerated(1) neutral(0.001) NULL KIAA1731 85459 genome.wustl.edu 37 11 93456393 93456393 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033395.1 +1 validated p.Q2045R 0.000 120 0% 60 50% 0 - possibly_damaging(0.539) tolerated(0.07) deleterious(0.502) NULL MED17 9440 genome.wustl.edu 37 11 93535110 93535110 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004268.4 +1 reviewed p.T480A 1.000 114 0% 64 56.2% 12 50% probably_damaging(0.996) tolerated(0.48) deleterious(0.472) HMMPfam_DUF2364 MTMR2 8898 genome.wustl.edu 37 11 95581040 95581040 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016156.5 -1 reviewed p.S339 1.000 221 0% 118 39.8% 2 50% - - - HMMPfam_Myotub-related,superfamily_SSF52799 BIRC2 329 genome.wustl.edu 37 11 102248842 102248842 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001166.3 +1 reviewed p.C595 1.000 153 0% 187 39.6% 25 72% - - - HMMSmart_RING,HMMPfam_zf-C3HC4 MMP27 64066 genome.wustl.edu 37 11 102567426 102567426 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022122.2 -1 reviewed p.N254D 0.000 170 0% 104 33.7% 0 - benign(0) tolerated(0.69) neutral(0.002) "HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain" MMP10 4319 genome.wustl.edu 37 11 102647354 102647354 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002425.2 -1 reviewed p.Q259R 1.000 52 0% 87 39.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) "HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain" ACAT1 38 genome.wustl.edu 37 11 108004559 108004559 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000019.3 +1 reviewed p.V45L 1.000 67 0% 110 40% 3 66.6% benign(0.001) tolerated(0.21) neutral(0.044) HMMPfam_Thiolase_N,superfamily_Thiolase-like ACAT1 38 genome.wustl.edu 37 11 108010927 108010927 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000019.3 +1 reviewed p.T239A 1.000 120 0% 57 59.6% 12 58.3% benign(0) tolerated(0.22) neutral(0.042) HMMPfam_Thiolase_N,superfamily_Thiolase-like ATM 472 genome.wustl.edu 37 11 108206584 108206584 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000051.3 +1 reviewed p.L2722M 1.000 110 0% 63 42.9% 8 62.5% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1 LOC728196 728196 genome.wustl.edu 37 11 111384318 111384318 + RNA SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XR_040780.2 +1 model NULL 0.000 46 0% 88 42% 1 0% - - - - SIK2 23235 genome.wustl.edu 37 11 111582955 111582955 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015191.1 +1 validated p.P374 0.589 19 0% 64 31.2% 2 100% - - - superfamily_Protein kinase-like (PK-like) NCAM1 4684 genome.wustl.edu 37 11 113140958 113140958 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000433634 +1 known p.I182T 1.000 33 0% 156 37.2% 0 - probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL ZBTB16 7704 genome.wustl.edu 37 11 114057690 114057690 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001018011.1 +1 reviewed p.F461 0.907 83 0% 141 33.3% 0 - - - - HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers DSCAML1 57453 genome.wustl.edu 37 11 117651260 117651260 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020693.2 -1 provisional p.T164 0.983 19 0% 149 47.7% 0 - benign(0) - - HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin MPZL3 196264 genome.wustl.edu 37 11 118107809 118107809 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198275.1 -1 provisional p.V136A 1.000 104 0% 61 54.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin PHLDB1 23187 genome.wustl.edu 37 11 118509632 118509632 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001144758.1 +1 validated p.S853R 0.899 10 0% 35 25.7% 14 85.7% possibly_damaging(0.471) tolerated(0.4) neutral(0.171) NULL CBL 867 genome.wustl.edu 37 11 119170234 119170234 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005188.2 +1 reviewed p.R822G 0.997 24 0% 59 35.6% 0 - probably_damaging(1) deleterious(0.05) deleterious(0.845) NULL USP2 9099 genome.wustl.edu 37 11 119243518 119243518 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004205.4 -1 validated p.S225G 1.000 7 0.000 42 0.381 0 - possibly_damaging(0.942) deleterious(0) deleterious(0.832) NULL TRIM29 23650 genome.wustl.edu 37 11 120008238 120008238 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012101.3 -1 reviewed p.S168P 0.297 5 0.000 23 0.391 0 - unknown(0) - - NULL ARHGEF12 23365 genome.wustl.edu 37 11 120318612 120318612 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015313.1 +1 reviewed p.K540R 0.991 68 0% 34 47.1% 6 16.6% benign(0.004) tolerated(0.64) neutral(0.003) HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS GRIK4 2900 genome.wustl.edu 37 11 120769319 120769319 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014619.2 +1 reviewed p.N415D 1.000 28 0% 99 40.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL HSPA8 3312 genome.wustl.edu 37 11 122931435 122931435 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006597.3 -1 reviewed p.M93V 0.994 79 0% 167 43.1% 37 32.4% benign(0) deleterious(0.01) neutral(0.406) HMMPfam_HSP70,superfamily_Actin-like ATPase domain CLMP 79827 genome.wustl.edu 37 11 122944266 122944266 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024769.2 -1 validated p.K346N 1.000 81 0% 166 47.6% 0 - possibly_damaging(0.894) tolerated(0.17) neutral(0.411) NULL SCN3B 55800 genome.wustl.edu 37 11 123516391 123516391 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001040151.1 -1 reviewed p.M41I 1.000 30 0% 41 41.5% 0 - possibly_damaging(0.45) tolerated(0.33) neutral(0.171) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin CDON 50937 genome.wustl.edu 37 11 125891414 125891414 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016952.4 -1 validated p.D26E 0.997 60 0% 51 54.9% 0 - probably_damaging(0.995) tolerated(0.2) deleterious(0.507) superfamily_Immunoglobulin ADAMTS15 170689 genome.wustl.edu 37 11 130343024 130343024 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_139055.2 +1 reviewed p.G721R 0.995 14 0% 46 34.8% 0 - benign(0.148) deleterious(0.05) neutral(0.358) HMMPfam_ADAM_spacer1 IGSF9B 22997 genome.wustl.edu 37 11 133790033 133790033 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014987.1 -1 validated p.L1196P 1.000 12 0% 24 41.7% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL IGSF9B 22997 genome.wustl.edu 37 11 133794738 133794738 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014987.1 -1 validated p.N699I 1.000 21 0% 78 46.2% 0 - probably_damaging(0.989) deleterious(0.01) deleterious(0.845) superfamily_FN_III-like CCDC77 84318 genome.wustl.edu 37 12 549859 549859 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032358.3 +1 validated p.E373G 0.965 128 0% 88 36.4% 1 100% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL B4GALNT3 283358 genome.wustl.edu 37 12 663004 663004 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173593.3 +1 validated p.S639G 0.997 29 0% 105 45.7% 16 31.2% possibly_damaging(0.775) deleterious(0.02) deleterious(0.671) NULL WNK1 65125 genome.wustl.edu 37 12 1005566 1005566 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018979.3 +1 reviewed p.K1971 0.000 67 0% 83 39.8% 4 0% - - - NULL ERC1 23085 genome.wustl.edu 37 12 1137166 1137166 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178040.2 +1 reviewed p.R33S 1.000 17 0% 31 38.7% 0 - unknown(0) deleterious(0) - NULL EFCAB4B 84766 genome.wustl.edu 37 12 3749945 3749945 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001144959.1 -1 validated p.R424 0.007 67 0% 65 35.4% 2 0% - - - NULL ENSG00000118976 0 genome.wustl.edu 37 12 3949293 3949293 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000237841 +1 known p.Y276H 1.000 187 0% 348 48.6% 0 - - - - NULL AKAP3 10566 genome.wustl.edu 37 12 4737145 4737145 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006422.2 -1 reviewed p.V308A 1.000 76 1.3% 102 65.7% 0 - probably_damaging(0.996) tolerated(1) neutral(0.462) HMMPfam_AKAP_110,HMMSmart_SM00807 AKAP3 10566 genome.wustl.edu 37 12 4737592 4737592 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006422.2 -1 reviewed p.L159S 0.548 95 0% 127 60.6% 0 - benign(0.259) deleterious(0.01) neutral(0.433) HMMSmart_SM00807 KCNA6 3742 genome.wustl.edu 37 12 4920235 4920235 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002235.3 +1 reviewed p.V343A 1.000 22 0% 80 45% 0 - possibly_damaging(0.942) deleterious(0) deleterious(0.832) HMMPfam_Ion_trans,superfamily_SSF81324 VWF 7450 genome.wustl.edu 37 12 6061567 6061567 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000552.3 -1 reviewed p.L2702P 1.000 50 0% 125 40% 36 0% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL TAPBPL 55080 genome.wustl.edu 37 12 6567916 6567916 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018009.4 +1 validated p.R337Q 0.337 37 0% 76 43.4% 14 21.4% possibly_damaging(0.478) tolerated(0.2) neutral(0.207) HMMSmart_SM00407,superfamily_Immunoglobulin LEPREL2 10536 genome.wustl.edu 37 12 6942757 6942757 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000290510 +1 known p.D404G 0.997 24 0% 201 42.3% 12 16.6% possibly_damaging(0.555) tolerated(0.07) deleterious(0.508) NULL LPCAT3 10162 genome.wustl.edu 37 12 7091886 7091886 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005768.5 -1 validated p.L106R 0.994 75 0% 124 32.3% 4 25% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CD163L1 283316 genome.wustl.edu 37 12 7525943 7525943 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_174941.4 -1 reviewed p.A1235T 0.002 23 0% 45 37.8% 0 - benign(0.156) tolerated(0.32) neutral(0.038) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like NANOG 79923 genome.wustl.edu 37 12 7945597 7945597 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024865.2 +1 validated p.S68Y 1.000 86 0% 103 49.5% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL SLC2A3 6515 genome.wustl.edu 37 12 8082419 8082419 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006931.2 -1 validated p.E241G 1.000 141 0% 182 36.8% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter PZP 5858 genome.wustl.edu 37 12 9312536 9312536 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002864.2 -1 validated p.T1045 0.194 104 0% 151 41.1% 0 - - - - superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp CLEC9A 283420 genome.wustl.edu 37 12 10215710 10215710 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207345.2 +1 provisional p.Y126D 0.005 172 0% 83 42.2% 1 0% probably_damaging(0.982) tolerated(0.09) deleterious(0.723) HMMSmart_SM00034,superfamily_C-type lectin-like TAS2R8 50836 genome.wustl.edu 37 12 10958774 10958774 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_023918.1 -1 reviewed p.F269S 0.001 54 0% 26 57.7% 0 - benign(0.057) deleterious(0) neutral(0.448) HMMPfam_TAS2R,superfamily_SSF81321 GRIN2B 2904 genome.wustl.edu 37 12 13715757 13715757 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000834.3 -1 reviewed p.H1472R 1.000 57 0% 132 40.9% 0 - probably_damaging(0.995) tolerated(1) neutral(0.458) HMMPfam_NMDAR2_C EPS8 2059 genome.wustl.edu 37 12 15803870 15803870 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004447.5 -1 reviewed p.M441V 0.013 62 0% 125 42.4% 1 100% benign(0) tolerated(1) - NULL STRAP 11171 genome.wustl.edu 37 12 16047036 16047036 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007178.3 +1 validated p.S153 1.000 191 0% 185 42.2% 8 50% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 PIK3C2G 5288 genome.wustl.edu 37 12 18477980 18477980 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004570.4 +1 reviewed p.L407S 0.997 291 0% 234 47.9% 1 100% benign(0) tolerated(1) - NULL CASC1 55259 genome.wustl.edu 37 12 25297503 25297503 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018272.3 -1 validated p.V266 0.000 195 0% 147 42.2% 2 100% - - - NULL ASUN 55726 genome.wustl.edu 37 12 27067003 27067003 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018164.2 -1 validated p.N493S 1.000 383 0.3% 122 36.9% 12 50% possibly_damaging(0.806) tolerated(0.37) neutral(0.323) HMMPfam_DUF2151 ERGIC2 51290 genome.wustl.edu 37 12 29496110 29496110 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016570.2 -1 validated p.F311V 0.929 60 0% 54 46.3% 11 27.2% benign(0.282) deleterious(0.02) deleterious(0.470) HMMPfam_DUF1692 DDX11 1663 genome.wustl.edu 37 12 31249809 31249809 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152438.1 +1 reviewed p.A549 0.000 17 0% 80 43.8% 8 50% - - - NULL C12orf35 55196 genome.wustl.edu 37 12 32138616 32138616 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018169.3 +1 validated p.D1576G 0.111 90 0% 75 50.7% 6 50% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL FGD4 121512 genome.wustl.edu 37 12 32755211 32755211 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_139241.2 +1 reviewed p.E318G 1.000 121 0% 108 42.6% 0 - benign(0.002) tolerated(0.17) neutral(0.059) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) YARS2 51067 genome.wustl.edu 37 12 32903673 32903673 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001040436.1 -1 validated p.E361 0.996 161 0% 240 46.7% 18 50% - - - HMMPfam_tRNA-synt_1b,superfamily_SSF52374 SYT10 341359 genome.wustl.edu 37 12 33579239 33579239 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198992.2 -1 provisional p.E115* 1.000 206 0% 157 45.2% 0 - - - - NULL C12orf40 283461 genome.wustl.edu 37 12 40078720 40078720 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001031748.2 +1 validated p.G446 0.091 174 0% 83 37.3% 0 - - - - NULL LRRK2 120892 genome.wustl.edu 37 12 40634339 40634339 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198578.3 +1 reviewed p.L209S 0.337 204 0% 107 44.9% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_ARM-type_fold CNTN1 1272 genome.wustl.edu 37 12 41352958 41352958 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001843.2 +1 reviewed p.K576E 0.051 62 0% 32 53.1% 0 - benign(0.023) tolerated(0.06) neutral(0.324) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin ADAMTS20 80070 genome.wustl.edu 37 12 43821126 43821126 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025003.3 -1 validated p.Y1364 0.766 26 0% 41 58.5% 0 - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat PUS7L 83448 genome.wustl.edu 37 12 44148900 44148900 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098614.1 -1 validated p.I50T 0.000 310 0% 187 41.7% 0 - benign(0) tolerated(1) - superfamily_PsdUridine_synth_cat_dom TWF1 5756 genome.wustl.edu 37 12 44191146 44191146 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002822.3 -1 reviewed p.L274P 1.000 240 0% 213 44.6% 8 50% probably_damaging(0.997) deleterious(0.04) deleterious(0.815) HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins NELL2 4753 genome.wustl.edu 37 12 44917208 44917208 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145107.1 -1 reviewed p.L672 0.962 47 0% 75 38.7% 0 - - - - PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196 NELL2 4753 genome.wustl.edu 37 12 45209787 45209787 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145107.1 -1 reviewed p.I156T 1.000 151 0% 161 45.3% 0 - possibly_damaging(0.484) deleterious(0) deleterious(0.605) HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl SCAF11 9169 genome.wustl.edu 37 12 46316294 46316294 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004719.2 -1 validated p.D1399 0.993 219 0% 102 47.1% 21 38% - - - NULL SCAF11 9169 genome.wustl.edu 37 12 46321011 46321011 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004719.2 -1 validated p.K825E 0.998 202 0% 133 40.6% 3 66.6% possibly_damaging(0.907) tolerated(0.44) neutral(0.373) NULL SLC38A2 54407 genome.wustl.edu 37 12 46758954 46758954 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018976.4 -1 validated p.G194 0.872 140 0% 129 47.3% 3 0% - - - HMMPfam_Aa_trans AMIGO2 347902 genome.wustl.edu 37 12 47472570 47472570 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001143668.1 -1 validated p.R72S 1.000 74 0% 143 42.7% 0 - benign(0.035) tolerated(0.11) neutral(0.274) HMMSmart_LRRNT,superfamily_SSF52058 SLC48A1 55652 genome.wustl.edu 37 12 48174054 48174054 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017842.2 +1 validated p.S144I 1.000 26 0% 73 54.8% 7 57.1% probably_damaging(0.99) tolerated(0.14) deleterious(0.691) NULL HDAC7 51564 genome.wustl.edu 37 12 48177992 48177992 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015401.3 -1 reviewed p.W934R 1.000 7 0.000 44 0.568 75 45.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52768 SENP1 29843 genome.wustl.edu 37 12 48490171 48490171 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014554.2 -1 validated p.T59A 0.999 135 0% 149 43.6% 0 - benign(0.009) tolerated(0.09) neutral(0.297) NULL MLL2 8085 genome.wustl.edu 37 12 49427174 49427174 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003482.3 -1 validated p.K3772E 0.543 12 0% 54 48.1% 3 66.6% unknown(0) - - NULL TUBA1B 10376 genome.wustl.edu 37 12 49522706 49522706 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006082.2 -1 validated p.G131S 1.000 39 0% 201 37.3% 83 22.8% probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like AQP2 359 genome.wustl.edu 37 12 50348467 50348467 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000486.5 +1 reviewed p.V194I 0.016 71 1.4% 289 42.6% 0 - benign(0.001) tolerated(1) - HMMPfam_MIP,superfamily_MIP LARP4 113251 genome.wustl.edu 37 12 50860778 50860778 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_199188.2 +1 validated p.T480A 1.000 144 0% 190 42.1% 1 100% benign(0.001) tolerated(0.06) neutral(0.323) NULL LARP4 113251 genome.wustl.edu 37 12 50867863 50867863 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_199188.2 +1 validated p.S589 0.967 48 0% 111 40.5% 0 - - - - NULL SCN8A 6334 genome.wustl.edu 37 12 52080887 52080887 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014191.2 +1 reviewed p.T166 0.987 157 0% 107 39.3% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels KRT75 9119 genome.wustl.edu 37 12 52822525 52822525 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004693.2 -1 reviewed p.Y346 0.302 61 0% 128 48.4% 0 - - - - superfamily_Prefoldin,HMMPfam_Filament KRT77 374454 genome.wustl.edu 37 12 53097178 53097178 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_175078.2 -1 reviewed p.M14T 0.977 51 0% 150 56% 0 - unknown(0) tolerated(0.24) - NULL EIF4B 1975 genome.wustl.edu 37 12 53412757 53412757 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001417.4 +1 validated p.E109D 1.000 105 0% 76 35.5% 12 25% possibly_damaging(0.61) tolerated(0.09) deleterious(0.508) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 TENC1 23371 genome.wustl.edu 37 12 53452496 53452496 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015319.2 +1 reviewed e17-2 0.974 12 0% 61 49.2% 6 100% - - - - OR10A7 121364 genome.wustl.edu 37 12 55615080 55615080 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005280.1 +1 provisional p.I91N 0.010 242 0% 149 36.9% 0 - benign(0) tolerated(0.31) neutral(0.027) HMMPfam_7tm_1,superfamily_SSF81321 OR6C74 254783 genome.wustl.edu 37 12 55641281 55641281 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005490.1 +1 provisional p.S70 0.000 161 0% 154 46.1% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR6C74 254783 genome.wustl.edu 37 12 55641510 55641510 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005490.1 +1 provisional p.W147R 0.995 55 0% 72 43.1% 0 - possibly_damaging(0.834) deleterious(0) deleterious(0.762) HMMPfam_7tm_1,superfamily_SSF81321 OR6C4 341418 genome.wustl.edu 37 12 55945299 55945299 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005494.1 +1 provisional p.T97A 0.014 85 1.2% 88 33% 0 - benign(0) tolerated(0.98) - HMMPfam_7tm_1,superfamily_SSF81321 CD63 967 genome.wustl.edu 37 12 56119360 56119360 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001780.4 -1 reviewed p.G234 1.000 32 0% 106 44.3% 3794 44.2% - - - NULL GDF11 10220 genome.wustl.edu 37 12 56142546 56142546 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005811.3 +1 reviewed p.T208A 1.000 17 0% 45 22.2% 10 40% benign(0) tolerated(0.49) neutral(0.011) NULL PMEL 6490 genome.wustl.edu 37 12 56350000 56350000 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006928.3 -1 validated p.S453Y 0.992 13 0% 45 33.3% 1 0% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL ERBB3 2065 genome.wustl.edu 37 12 56482341 56482341 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001982.2 +1 reviewed p.D297Y 1.000 90 0% 105 52.4% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Furin-like,superfamily_Growth factor receptor domain ANKRD52 283373 genome.wustl.edu 37 12 56642656 56642656 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173595.3 -1 validated e16-2 1.000 11 0% 42 33.3% 0 - - - - - NACA 4666 genome.wustl.edu 37 12 57112966 57112966 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001113203.1 -1 validated p.S783Y 0.182 40 0% 59 40.7% 0 - unknown(0) - - NULL STAT6 6778 genome.wustl.edu 37 12 57492328 57492328 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003153.4 -1 reviewed p.S707P 0.000 35 0% 112 36.6% 161 37.8% benign(0) tolerated(0.33) neutral(0.024) NULL LRP1 4035 genome.wustl.edu 37 12 57567078 57567078 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002332.2 +1 reviewed p.C1097 1.000 16 0% 65 40% 0 - - - - HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module LRP1 4035 genome.wustl.edu 37 12 57597257 57597257 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002332.2 +1 reviewed p.D3635G 0.990 4 0.000 20 0.450 5 20% possibly_damaging(0.776) tolerated(0.36) neutral(0.309) HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module SRGAP1 57522 genome.wustl.edu 37 12 64480777 64480777 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020762.2 +1 validated e11-2 1.000 343 0% 71 42.3% 0 - - - - - CAND1 55832 genome.wustl.edu 37 12 67699464 67699464 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018448.3 +1 validated p.S672 1.000 50 0% 41 36.6% 2 50% - - - superfamily_ARM repeat MDM1 56890 genome.wustl.edu 37 12 68696631 68696631 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017440.4 -1 reviewed p.L581 0.002 50 0% 47 51.1% 6 16.6% - - - NULL MDM2 4193 genome.wustl.edu 37 12 69233289 69233289 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002392.3 +1 reviewed p.D385G 0.980 116 0% 76 32.9% 3 100% benign(0.005) tolerated(0.1) neutral(0.286) NULL MDM2 4193 genome.wustl.edu 37 12 69233329 69233329 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002392.3 +1 reviewed p.E398 1.000 120 0% 84 61.9% 2 0% unknown(0) tolerated(0.4) - NULL CPSF6 11052 genome.wustl.edu 37 12 69652731 69652731 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007007.2 +1 validated p.P352 0.686 38 2.6% 88 45.5% 23 30.4% - - - NULL ENSG00000246966 0 genome.wustl.edu 37 12 70932092 70932092 + RNA SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000501222 +1 known NULL 0.006 37 0% 42 57.1% 0 - - - - - LGR5 8549 genome.wustl.edu 37 12 71974112 71974112 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003667.2 +1 provisional p.N487K 0.015 123 0% 156 45.5% 13 46.1% possibly_damaging(0.527) deleterious(0.03) deleterious(0.542) superfamily_L domain-like CCDC59 29080 genome.wustl.edu 37 12 82750886 82750886 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014167.4 -1 validated p.K106R 1.000 234 0% 345 47% 20 45% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL ALX1 8092 genome.wustl.edu 37 12 85677587 85677587 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006982.2 +1 reviewed p.H155R 1.000 38 0% 77 42.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like RASSF9 9182 genome.wustl.edu 37 12 86199679 86199679 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005447.3 -1 reviewed p.E37* 1.000 112 0% 88 40.9% 0 - - - - HMMSmart_SM00314 C12orf50 160419 genome.wustl.edu 37 12 88379815 88379815 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152589.1 -1 predicted p.R313I 1.000 216 0% 107 36.4% 0 - benign(0.001) deleterious(0) neutral(0.445) NULL CEP290 80184 genome.wustl.edu 37 12 88465627 88465627 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025114.3 -1 reviewed p.L1929S 1.000 437 0% 168 45.8% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DCN 1634 genome.wustl.edu 37 12 91546888 91546888 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001920.3 -1 reviewed p.L244P 1.000 147 0% 136 46.3% 78 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like PLEKHG7 440107 genome.wustl.edu 37 12 93157879 93157879 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004330.2 +1 validated p.V281 0.000 171 0% 137 38% 5 40% - - - HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 EEA1 8411 genome.wustl.edu 37 12 93196347 93196347 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003566.3 -1 validated p.Q835K 0.985 502 0% 158 47.5% 0 - benign(0.009) tolerated(0.39) neutral(0.017) NULL CCDC41 51134 genome.wustl.edu 37 12 94725593 94725593 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001042399.1 -1 validated p.E530D 1.000 276 0% 217 47.5% 13 46.1% possibly_damaging(0.895) tolerated(0.28) neutral(0.384) NULL VEZT 55591 genome.wustl.edu 37 12 95688088 95688088 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017599.3 +1 validated p.V521 0.000 114 0% 127 54.3% 10 70% - - - NULL APAF1 317 genome.wustl.edu 37 12 99042441 99042441 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181861.1 +1 reviewed p.M59T 0.012 159 0% 308 44.5% 0 - benign(0) tolerated(0.33) neutral(0.024) HMMPfam_CARD,superfamily_WD40 repeat-like UHRF1BP1L 23074 genome.wustl.edu 37 12 100452984 100452984 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015054.1 -1 validated p.T691A 0.958 81 0% 104 36.5% 0 - benign(0.271) tolerated(0.29) neutral(0.058) NULL UHRF1BP1L 23074 genome.wustl.edu 37 12 100453161 100453161 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015054.1 -1 validated p.D632Y 1.000 15 0% 21 57.1% 0 - probably_damaging(0.997) deleterious(0.02) deleterious(0.849) NULL GOLGA2P5 55592 genome.wustl.edu 37 12 100564373 100564373 + RNA SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NR_024261.1 -1 validated NULL 0.990 4 0.000 13 0.538 0 - - - - - GNPTAB 79158 genome.wustl.edu 37 12 102140979 102140979 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024312.4 -1 reviewed p.I1245K 0.999 252 0% 174 31.6% 2 0% benign(0.126) tolerated(0.15) neutral(0.252) NULL POLR3B 55703 genome.wustl.edu 37 12 106848441 106848441 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018082.5 +1 validated p.Y749H 1.000 77 0% 52 38.5% 0 - possibly_damaging(0.938) deleterious(0.03) deleterious(0.748) HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase RIC8B 55188 genome.wustl.edu 37 12 107254061 107254061 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018157.2 +1 validated p.K441T 1.000 71 0% 61 45.9% 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ric8 MTERFD3 80298 genome.wustl.edu 37 12 107371353 107371353 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001033050.1 -1 validated p.P380 0.986 205 0% 122 44.3% 4 25% - - - NULL CRY1 1407 genome.wustl.edu 37 12 107393632 107393632 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004075.3 -1 validated p.K278N 1.000 98 0% 47 46.8% 1 0% possibly_damaging(0.901) tolerated(0.13) deleterious(0.609) HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain BTBD11 121551 genome.wustl.edu 37 12 108011214 108011214 + Splice_Site SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001018072.1 +1 validated e9+1 1.000 41 0% 67 50.7% 0 - - - - - FICD 11153 genome.wustl.edu 37 12 108912197 108912197 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007076.2 +1 validated p.A108T 1.000 11 0% 52 44.2% 0 - benign(0.044) tolerated(0.06) neutral(0.325) superfamily_SSF48452 FICD 11153 genome.wustl.edu 37 12 108912305 108912305 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007076.2 +1 validated p.T144P 0.986 11 0% 52 36.5% 2 100% benign(0.208) tolerated(0.06) neutral(0.343) superfamily_SSF48452 CORO1C 23603 genome.wustl.edu 37 12 109072092 109072092 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014325.2 -1 reviewed p.N92D 1.000 21 0% 35 54.3% 5 20% benign(0.095) tolerated(0.12) neutral(0.268) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 ACACB 32 genome.wustl.edu 37 12 109637256 109637256 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001093.3 +1 reviewed p.D893Y 1.000 57 0% 78 42.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Single hybrid motif MYO1H 283446 genome.wustl.edu 37 12 109870701 109870701 + Splice_Site SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001101421.3 +1 provisional e19-1 1.000 27 0% 42 42.9% 0 - - - - - GIT2 9815 genome.wustl.edu 37 12 110403334 110403334 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_057169.3 -1 reviewed p.Q271H 0.981 95 0% 85 37.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GIT_SHD,HMMSmart_SM00555 IFT81 28981 genome.wustl.edu 37 12 110570417 110570417 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001143779.1 +1 validated p.G165 1.000 81 0% 85 40% 1 100% - - - NULL MAPKAPK5 8550 genome.wustl.edu 37 12 112330835 112330835 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_139078.1 +1 reviewed p.E464D 1.000 108 0% 98 35.7% 22 27.2% possibly_damaging(0.942) deleterious(0) deleterious(0.832) NULL NAA25 80018 genome.wustl.edu 37 12 112486217 112486217 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024953.3 -1 reviewed p.Y587H 1.000 143 0% 111 45.9% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NatB_MDM20,superfamily_TPR-like C12orf51 283450 genome.wustl.edu 37 12 112677783 112677783 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001109662.2 -1 validated p.A1247 1.000 42 0% 69 39.1% 1 100% - - - NULL PTPN11 5781 genome.wustl.edu 37 12 112926959 112926959 + Missense_Mutation SNP C C T rs191525506 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002834.3 +1 reviewed p.R527C 1.000 57 0% 61 32.8% 2 100% benign(0.041) tolerated(0.05) neutral(0.348) NULL OAS2 4939 genome.wustl.edu 37 12 113444398 113444398 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016817.2 +1 reviewed p.Y550C 0.638 40 0% 36 44.4% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain TPCN1 53373 genome.wustl.edu 37 12 113716018 113716018 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001143819.1 +1 validated p.Y475 0.539 230 0% 205 40.5% 4 50% - - - NULL TBX5 6910 genome.wustl.edu 37 12 114804192 114804193 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000192.3 -1 reviewed p.E253fs 1.000:1.000 - - - - - - - - - NULL MED13L 23389 genome.wustl.edu 37 12 116418598 116418598 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015335.3 -1 validated p.F1774S 1.000 51 0% 50 62% 3 100% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_TRAP_240kDa KSR2 283455 genome.wustl.edu 37 12 117962906 117962906 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173598.4 -1 validated p.Q628R 1.000 26 0% 55 50.9% 0 - benign(0.31) tolerated(0.62) neutral(0.101) superfamily_Protein kinase-like (PK-like) GCN1L1 10985 genome.wustl.edu 37 12 120621479 120621479 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006836.1 -1 validated p.K107Q 1.000 17 0% 31 41.9% 0 - benign(0.192) tolerated(0.61) neutral(0.022) superfamily_ARM repeat RNF10 9921 genome.wustl.edu 37 12 121000804 121000804 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014868.4 +1 reviewed p.V395 0.254 116 0% 165 44.8% 43 32.5% - - - NULL SETD1B 23067 genome.wustl.edu 37 12 122268116 122268116 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015048.1 +1 validated p.S1915A 1.000 22 0% 64 43.8% 8 25% unknown(0) - - HMMSmart_PostSET LRRC43 254050 genome.wustl.edu 37 12 122669273 122669273 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098519.1 +1 validated p.T120A 0.042 28 0% 94 45.7% 0 - benign(0.056) tolerated(0.47) neutral(0.014) superfamily_Outer arm dynein light chain 1 KNTC1 9735 genome.wustl.edu 37 12 123034378 123034378 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014708.4 +1 reviewed p.S351 0.131 185 0% 109 45% 0 - - - - NULL KNTC1 9735 genome.wustl.edu 37 12 123107049 123107049 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014708.4 +1 reviewed p.E2137G 1.000 124 0% 57 42.1% 17 29.4% benign(0.079) deleterious(0.03) neutral(0.370) NULL DNAH10 196385 genome.wustl.edu 37 12 124317800 124317800 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207437.3 +1 validated p.L1444P 1.000 99 0% 80 38.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DHC_N2 TMEM132B 114795 genome.wustl.edu 37 12 126138565 126138565 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052907.2 +1 provisional p.T849N 0.997 50 0% 36 25% 0 - probably_damaging(0.999) deleterious(0.05) deleterious(0.836) NULL SFSWAP 6433 genome.wustl.edu 37 12 132262624 132262624 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004592.2 +1 reviewed p.T719 0.267 29 0% 96 54.2% 44 36.3% - - - NULL DDX51 317781 genome.wustl.edu 37 12 132624296 132624296 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_175066.3 -1 validated p.M620V 0.994 24 0% 88 39.8% 19 42.1% benign(0.205) deleterious(0.02) neutral(0.403) superfamily_SSF52540 ANKLE2 23141 genome.wustl.edu 37 12 133306631 133306631 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015114.1 -1 validated p.N706T 0.000 47 0% 109 41.3% 37 64.8% benign(0) tolerated(0.18) neutral(0.056) NULL MPHOSPH8 54737 genome.wustl.edu 37 13 20242544 20242544 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017520.3 +1 validated p.I734M 0.976 128 0% 116 39.7% 5 40% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL PARP4 143 genome.wustl.edu 37 13 25075965 25075965 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006437.3 -1 reviewed p.H47R 0.990 139 0% 166 41% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT RNF17 56163 genome.wustl.edu 37 13 25363486 25363486 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031277.2 +1 reviewed p.I262V 0.989 61 0% 40 42.5% 0 - benign(0.017) deleterious(0) neutral(0.445) NULL SNORD102 26771 genome.wustl.edu 37 13 27829215 27829215 + RNA SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NR_002574.1 +1 provisional NULL 1.000 104 0% 77 35.1% 0 - - - - - RPL21 6144 genome.wustl.edu 37 13 27830372 27830372 + Silent SNP C C T rs9793060 byCluster TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000982.3 +1 reviewed p.H98 1.000 48 0% 70 37.1% 74 0% - - - HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain MTIF3 219402 genome.wustl.edu 37 13 28011374 28011374 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152912.4 -1 reviewed p.N166T 0.999 249 0% 182 36.3% 153 52.2% possibly_damaging(0.754) tolerated(0.09) deleterious(0.575) superfamily_Translation initiation factor IF3 C-terminal domain LNX2 222484 genome.wustl.edu 37 13 28143281 28143281 + Nonsense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153371.3 -1 validated p.C180* 0.004 57 0% 61 41% 1 0% - - - NULL BRCA2 675 genome.wustl.edu 37 13 32929407 32929407 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000059.3 +1 reviewed p.C2473R 0.000 61 0% 35 42.9% 0 - benign(0) tolerated(0.22) neutral(0.042) NULL PDS5B 23047 genome.wustl.edu 37 13 33344372 33344372 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015032.3 +1 reviewed p.S1246R 0.277 59 0% 29 44.8% 5 40% benign(0.114) deleterious(0.04) neutral(0.358) NULL STARD13 90627 genome.wustl.edu 37 13 33703173 33703173 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178006.3 -1 validated p.T547 0.321 38 0% 68 41.2% 0 - - - - NULL NBEA 26960 genome.wustl.edu 37 13 35733742 35733742 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015678.4 +1 validated p.S1145* 1.000 99 0% 72 33.3% 0 - - - - superfamily_ARM repeat CCNA1 8900 genome.wustl.edu 37 13 37011837 37011837 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003914.3 +1 reviewed p.P123 0.005 65 0% 118 55.9% 7 57.1% - - - NULL FREM2 341640 genome.wustl.edu 37 13 39438600 39438600 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207361.4 +1 reviewed p.Y2614H 1.000 71 0% 49 65.3% 2 50% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL PROSER1 80209 genome.wustl.edu 37 13 39587538 39587538 + Silent SNP C C T rs187828982 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025138.3 -1 validated p.S617 0.189 56 0% 118 44.9% 6 66.6% - - - NULL NHLRC3 387921 genome.wustl.edu 37 13 39616266 39616266 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001012754.2 +1 validated p.K137R 0.982 252 0% 387 44.4% 4 50% possibly_damaging(0.909) tolerated(0.36) neutral(0.382) superfamily_SSF101898 AKAP11 11215 genome.wustl.edu 37 13 42875466 42875466 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016248.2 +1 reviewed p.S862P 0.002 13 0% 17 47.1% 0 - benign(0.001) tolerated(0.87) neutral(0.001) NULL TSC22D1 8848 genome.wustl.edu 37 13 45009014 45009014 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_183422.2 -1 validated p.L990 1.000 42 0% 118 53.4% 46 52.1% - - - HMMPfam_TSC22,PatternScan_TSC22 TSC22D1 8848 genome.wustl.edu 37 13 45148779 45148779 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_183422.2 -1 validated p.S478C 1.000 70 0% 136 45.6% 6 66.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL RCBTB2 1102 genome.wustl.edu 37 13 49086226 49086226 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001268.2 -1 reviewed p.C201R 1.000 111 0% 123 40.7% 2 50% possibly_damaging(0.62) tolerated(0.54) neutral(0.224) HMMPfam_RCC1,superfamily_RCC1/BLIP-II CAB39L 81617 genome.wustl.edu 37 13 49885131 49885131 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001079670.1 -1 validated e8-2 1.000 80 0% 106 33% 0 - - - - - KCNRG 283518 genome.wustl.edu 37 13 50590137 50590137 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173605.1 +1 validated p.R170G 1.000 40 0% 59 44.1% 3 0% probably_damaging(0.983) deleterious(0) deleterious(0.873) NULL INTS6 26512 genome.wustl.edu 37 13 51943205 51943205 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012141.2 -1 reviewed p.Q782H 0.799 206 0% 135 38.5% 7 57.1% possibly_damaging(0.459) tolerated(0.12) neutral(0.411) NULL UTP14C 9724 genome.wustl.edu 37 13 52603421 52603421 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021645.5 +1 validated p.G161R 0.728 55 0% 58 56.9% 0 - benign(0.002) tolerated(0.23) neutral(0.042) HMMPfam_Utp14 NEK5 341676 genome.wustl.edu 37 13 52684507 52684507 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_199289.1 -1 provisional p.G146W 1.000 478 0.2% 167 41.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase DIAPH3 81624 genome.wustl.edu 37 13 60385043 60385043 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001042517.1 -1 validated p.E1014D 0.798 441 0% 202 43.1% 0 - benign(0.008) tolerated(0.19) neutral(0.050) HMMSmart_SM00498,superfamily_Formin homology 2 domain (FH2 domain) DIAPH3 81624 genome.wustl.edu 37 13 60485872 60485872 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001042517.1 -1 validated p.V788 0.690 101 0% 61 47.5% 0 - - - - HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain) KLHL1 57626 genome.wustl.edu 37 13 70456434 70456434 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020866.2 -1 validated p.L403P 1.000 55 0% 96 42.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_BACK MYCBP2 23077 genome.wustl.edu 37 13 77740590 77740590 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015057.4 -1 validated p.R2034 0.996 100 0% 88 39.8% 0 - - - - NULL RBM26 64062 genome.wustl.edu 37 13 79940775 79940775 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022118.3 -1 validated p.P376 1.000 25 0% 37 45.9% 2 100% - - - NULL SLITRK1 114798 genome.wustl.edu 37 13 84454272 84454272 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052910.1 -1 reviewed p.N457 1.000 49 0% 72 44.4% 0 - - - - superfamily_SSF52058 DCT 1638 genome.wustl.edu 37 13 95121279 95121279 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001129889.1 -1 validated p.C106R 1.000 20 0% 42 35.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_EGF_LAM_1,superfamily_Di-copper_centre,PatternScan_EGF_1 DNAJC3 5611 genome.wustl.edu 37 13 96375600 96375600 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006260.3 +1 reviewed p.L100 0.963 179 0% 176 40.9% 0 - - - - HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like OXGR1 27199 genome.wustl.edu 37 13 97639237 97639237 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_080818.3 -1 reviewed p.I259 1.000 80 0% 146 44.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like STK24 8428 genome.wustl.edu 37 13 99127140 99127140 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003576.3 -1 validated p.T190A 1.000 20 0% 69 43.5% 17 52.9% possibly_damaging(0.478) deleterious(0) deleterious(0.603) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ITGBL1 9358 genome.wustl.edu 37 13 102345047 102345047 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004791.1 +1 provisional p.C376 0.937 56 0% 100 37% 0 - - - - HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196 LOC643677 643677 genome.wustl.edu 37 13 103391975 103391975 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002344085.1 -1 model p.I3620T 0.000 251 0% 122 41% 0 - - - - NULL LIG4 3981 genome.wustl.edu 37 13 108861526 108861526 + Silent SNP C C T rs184527984 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098268.1 -1 reviewed p.T697 0.001 101 0% 145 34.5% 2 0% - - - HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT TNFSF13B 10673 genome.wustl.edu 37 13 108939151 108939151 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006573.3 +1 reviewed p.V142A 0.659 126 0% 78 41% 4 0% possibly_damaging(0.643) tolerated(0.21) neutral(0.270) superfamily_TNF-like ARHGEF7 8874 genome.wustl.edu 37 13 111935652 111935652 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001113511.1 +1 reviewed p.L652P 1.000 23 0% 79 38% 19 47.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ATP11A 23250 genome.wustl.edu 37 13 113496633 113496633 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000418678 +1 known p.S558F 1.000 115 0% 213 45.5% 0 - - - - superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N ATP11A 23250 genome.wustl.edu 37 13 113530182 113530182 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032189.3 +1 reviewed p.I1085T 0.543 7 0.000 52 0.385 1 100% benign(0.005) tolerated(0.55) neutral(0.007) superfamily_Calcium ATPase transmembrane domain M MCF2L 23263 genome.wustl.edu 37 13 113729360 113729360 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001112732.1 +1 validated p.I446V 0.995 7 0.000 24 0.333 13 84.6% benign(0.009) tolerated(0.22) neutral(0.043) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat OR4Q3 441669 genome.wustl.edu 37 14 20215836 20215836 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_172194.1 +1 provisional p.G84R 0.000 91 0% 69 42% 0 - benign(0) tolerated(0.14) neutral(0.249) HMMPfam_7tm_1,superfamily_SSF81321 OR11G2 390439 genome.wustl.edu 37 14 20666164 20666164 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005503.1 +1 provisional p.T224A 0.892 124 0% 202 44.6% 0 - benign(0) tolerated(0.49) neutral(0.011) HMMPfam_7tm_1,superfamily_SSF81321 CCNB1IP1 57820 genome.wustl.edu 37 14 20779873 20779873 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021178.3 -1 validated p.R224* 0.963 41 0% 184 40.2% 221 48.8% - - - NULL METTL17 64745 genome.wustl.edu 37 14 21462138 21462138 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001029991.1 +1 validated p.S205R 0.920 39 0% 109 39.4% 31 38.7% benign(0.007) tolerated(0.56) neutral(0.006) HMMPfam_Rsm22,superfamily_SSF53335 RPGRIP1 57096 genome.wustl.edu 37 14 21793105 21793105 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020366.3 +1 reviewed p.A697 0.972 54 0% 88 36.4% 0 - - - - NULL CHD8 57680 genome.wustl.edu 37 14 21868739 21868739 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020920.3 -1 reviewed p.G1189E 1.000 57 0% 59 49.2% 1 0% probably_damaging(0.987) tolerated(0.06) deleterious(0.759) superfamily_P-loop containing nucleoside triphosphate hydrolases CHD8 57680 genome.wustl.edu 37 14 21870573 21870573 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020920.3 -1 reviewed p.F989L 1.000 51 0% 73 38.4% 4 50% benign(0.31) tolerated(0.09) neutral(0.393) superfamily_P-loop containing nucleoside triphosphate hydrolases ENSG00000252492 0 genome.wustl.edu 37 14 22069938 22069938 + RNA SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000516683 -1 novel NULL 0.003 14 0% 22 36.4% 0 - - - - - MMP14 4323 genome.wustl.edu 37 14 23313604 23313604 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004995.2 +1 reviewed p.N346D 1.000 19 0% 107 41.1% 9 22.2% benign(0) tolerated(0.58) neutral(0.005) superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120 PRMT5 10419 genome.wustl.edu 37 14 23391451 23391451 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006109.3 -1 validated e16-2 1.000 78 0% 110 55.5% 0 - - - - - MYH7 4625 genome.wustl.edu 37 14 23894063 23894063 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000257.2 -1 reviewed p.K865R 1.000 47 0% 102 36.3% 0 - probably_damaging(0.999) tolerated(0.12) deleterious(0.751) NULL MYH7 4625 genome.wustl.edu 37 14 23898166 23898166 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000257.2 -1 reviewed p.D469Y 1.000 18 0% 67 50.7% 0 - probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases DHRS2 10202 genome.wustl.edu 37 14 24108440 24108440 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_182908.4 +1 validated p.I65V 0.706 11 0% 30 40% 0 - benign(0.002) tolerated(0.63) neutral(0.004) HMMPfam_adh_short,superfamily_NAD(P)-bd TGM1 7051 genome.wustl.edu 37 14 24724455 24724455 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000359.2 -1 reviewed p.S550 0.047 16 0% 59 20.3% 3 66.6% - - - superfamily_SSF54001 C14orf126 112487 genome.wustl.edu 37 14 31917508 31917508 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_080664.2 -1 validated p.K112E 1.000 420 0% 316 42.7% 1 0% possibly_damaging(0.913) deleterious(0) deleterious(0.809) HMMPfam_Tyr_Deacylase,superfamily_DTyrtRNA_deacyls ARHGAP5 394 genome.wustl.edu 37 14 32561420 32561420 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001030055.1 +1 reviewed p.M515I 1.000 67 0% 38 31.6% 0 - benign(0.307) tolerated(0.46) neutral(0.107) HMMPfam_FF,HMMSmart_SM00441 NPAS3 64067 genome.wustl.edu 37 14 34243594 34243594 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173159.2 +1 reviewed p.R289G 1.000 69 0% 42 52.4% 0 - benign(0.318) tolerated(0.46) neutral(0.112) NULL NFKBIA 4792 genome.wustl.edu 37 14 35871985 35871985 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020529.2 -1 reviewed p.N210D 1.000 48 0% 170 53.5% 93 40.8% benign(0.062) tolerated(0.22) neutral(0.046) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat NKX2-8 26257 genome.wustl.edu 37 14 37050130 37050130 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014360.2 -1 provisional p.A233T 0.483 5 0.000 21 0.571 0 - benign(0.03) deleterious(0.01) neutral(0.407) NULL SSTR1 6751 genome.wustl.edu 37 14 38679391 38679391 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001049.2 +1 reviewed p.E266G 1.000 22 0% 109 40.4% 0 - benign(0.35) tolerated(0.11) neutral(0.383) HMMPfam_7tm_1,superfamily_SSF81321 FAM179B 23116 genome.wustl.edu 37 14 45475279 45475279 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015091.2 +1 validated p.R905* 0.995 66 0% 24 50% 0 - - - - superfamily_ARM repeat RPS29 6235 genome.wustl.edu 37 14 50044564 50044564 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001030001.1 -1 reviewed p.L57P 0.765 40 0% 67 44.8% 16 43.7% unknown(0) deleterious(0.02) - NULL ARF6 382 genome.wustl.edu 37 14 50360902 50360902 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001663.3 +1 reviewed p.Y150H 1.000 9 0.000 62 0.484 48 47.9% benign(0.087) deleterious(0.01) neutral(0.412) HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases PYGL 5836 genome.wustl.edu 37 14 51372175 51372175 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002863.4 -1 reviewed p.N827D 1.000 230 0% 170 48.8% 37 40.5% benign(0) tolerated(0.3) neutral(0.029) HMMPfam_Phosphorylase,superfamily_SSF53756 PYGL 5836 genome.wustl.edu 37 14 51379814 51379814 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002863.4 -1 reviewed p.Q518R 1.000 15 0% 68 29.4% 4 25% possibly_damaging(0.445) tolerated(0.18) neutral(0.201) HMMPfam_Phosphorylase,superfamily_SSF53756 NID2 22795 genome.wustl.edu 37 14 52535604 52535604 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007361.3 -1 validated p.F37L 1.000 13 0% 28 46.4% 0 - benign(0.002) tolerated(0.23) neutral(0.042) NULL CDKN3 1033 genome.wustl.edu 37 14 54886735 54886735 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005192.3 +1 reviewed p.R193Q 1.000 419 0% 174 43.1% 14 57.1% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMSmart_SM00404,HMMPfam_CDKN3,superfamily_(Phosphotyrosine protein) phosphatases II KTN1 3895 genome.wustl.edu 37 14 56115581 56115581 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001079521.1 +1 validated p.N787T 0.244 156 0.6% 81 13.6% 2 0% benign(0) tolerated(0.21) neutral(0.044) superfamily_Spectrin repeat KTN1 3895 genome.wustl.edu 37 14 56142613 56142613 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001079521.1 +1 validated p.K1278E 1.000 173 0% 97 40.2% 105 40% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL PSMA3 5684 genome.wustl.edu 37 14 58738595 58738595 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002788.2 +1 reviewed p.S250 0.998 238 0% 93 50.5% 268 50.7% - - - NULL JKAMP 51528 genome.wustl.edu 37 14 59951313 59951313 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016475.3 +1 validated e1+2 0.999 16 0% 92 37% 2 50% - - - - SIX1 6495 genome.wustl.edu 37 14 61115798 61115798 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005982.3 -1 reviewed p.L37P 1.000 5 0.000 33 0.455 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRKCH 5583 genome.wustl.edu 37 14 61995828 61995828 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006255.3 +1 reviewed p.E490G 1.000 48 0% 81 43.2% 5 60% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PLEKHH1 57475 genome.wustl.edu 37 14 68042666 68042666 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020715.2 +1 validated p.I766V 1.000 27 0% 45 53.3% 10 50% benign(0.08) tolerated(0.5) neutral(0.015) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ZFYVE26 23503 genome.wustl.edu 37 14 68256194 68256194 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015346.3 -1 reviewed p.P959 0.749 34 0% 59 35.6% 0 - - - - NULL GALNTL1 57452 genome.wustl.edu 37 14 69792697 69792697 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020692.2 +1 validated p.L174P 1.000 44 0% 118 44.9% 4 25% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases GALNTL1 57452 genome.wustl.edu 37 14 69814803 69814803 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000448469 +1 known p.P541 0.001 9 0.000 44 0.409 0 - - - - NULL PCNX 22990 genome.wustl.edu 37 14 71444579 71444579 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014982.2 +1 validated p.N509D 0.008 76 0% 86 43% 0 - unknown(0) tolerated(0.29) - NULL RGS6 9628 genome.wustl.edu 37 14 72941351 72941351 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004296.4 +1 validated p.T213P 1.000 359 0% 183 44.8% 0 - possibly_damaging(0.864) tolerated(0.06) deleterious(0.657) NULL KIAA0317 9870 genome.wustl.edu 37 14 75139623 75139623 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001039479.1 -1 validated p.F445L 1.000 66 0% 85 43.5% 6 50% possibly_damaging(0.929) deleterious(0) deleterious(0.821) NULL EIF2B2 8892 genome.wustl.edu 37 14 75475875 75475875 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014239.3 +1 reviewed p.D347A 0.996 84 0% 145 44.8% 49 48.9% benign(0.15) deleterious(0.02) neutral(0.396) NULL MLH3 27030 genome.wustl.edu 37 14 75508357 75508357 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001040108.1 -1 reviewed p.F1142L 1.000 95 0% 150 48% 3 33.3% benign(0.009) tolerated(0.1) neutral(0.287) NULL TTLL5 23093 genome.wustl.edu 37 14 76243107 76243107 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015072.4 +1 reviewed p.A767 1.000 169 0.6% 122 49.2% 1 0% - - - NULL POMT2 29954 genome.wustl.edu 37 14 77743823 77743823 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013382.5 -1 reviewed p.F717V 1.000 47 0% 100 45% 32 46.8% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL GSTZ1 2954 genome.wustl.edu 37 14 77796116 77796116 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145870.2 +1 reviewed p.Q147R 1.000 37 0% 73 37% 80 41.2% benign(0) tolerated(0.46) neutral(0.012) superfamily_Glutathione S-transferase (GST) C-terminal domain SAMD15 161394 genome.wustl.edu 37 14 77845165 77845165 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001010860.1 +1 provisional p.S468 0.004 106 0% 141 44% 0 - - - - NULL TSHR 7253 genome.wustl.edu 37 14 81562996 81562996 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000369.2 +1 reviewed p.N187D 1.000 120 0% 97 46.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_L domain-like GTF2A1 2957 genome.wustl.edu 37 14 81658908 81658908 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015859.2 -1 validated p.E296 1.000 108 0% 92 43.5% 3 0% - - - HMMPfam_TFIIA GALC 2581 genome.wustl.edu 37 14 88434718 88434718 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000153.2 -1 reviewed p.R290H 1.000 68 0% 51 31.4% 1 0% possibly_damaging(0.722) deleterious(0.02) deleterious(0.645) HMMPfam_Glyco_hydro_59,superfamily_(Trans)glycosidases GALC 2581 genome.wustl.edu 37 14 88454517 88454517 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000153.2 -1 reviewed p.V100A 0.998 111 0% 189 43.9% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Glyco_hydro_59,superfamily_(Trans)glycosidases PTPN21 11099 genome.wustl.edu 37 14 88936282 88936282 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007039.3 -1 reviewed p.M995T 1.000 119 0% 126 43.7% 3 0% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II ZC3H14 79882 genome.wustl.edu 37 14 89042224 89042224 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024824.4 +1 validated p.I355V 1.000 309 0% 151 37.7% 16 43.7% possibly_damaging(0.916) tolerated(0.09) deleterious(0.663) NULL TTC8 123016 genome.wustl.edu 37 14 89336481 89336481 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144596.2 +1 reviewed p.A330T 1.000 61 0% 86 40.7% 20 60% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF48452 PSMC1 5700 genome.wustl.edu 37 14 90729701 90729701 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002802.2 +1 reviewed p.L65S 1.000 112 0% 93 32.3% 9 44.4% benign(0.001) deleterious(0.02) neutral(0.383) NULL PSMC1 5700 genome.wustl.edu 37 14 90730065 90730065 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002802.2 +1 reviewed p.E113 1.000 188 0% 110 41.8% 7 57.1% - - - NULL BTBD7 55727 genome.wustl.edu 37 14 93708697 93708698 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001002860.2 -1 validated p.L1107fs 0.994:0.979 - - - - - - - - - NULL BTBD7 55727 genome.wustl.edu 37 14 93709303 93709303 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001002860.2 -1 validated p.G905 0.455 225 0% 202 43.1% 2 100% - - - NULL UNC79 57578 genome.wustl.edu 37 14 94004334 94004334 + Splice_Site SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020818.3 +1 validated e9-1 1.000 32 0% 39 43.6% 0 - - - - - UNC79 57578 genome.wustl.edu 37 14 94173108 94173108 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020818.3 +1 validated p.H2412R 1.000 50 0% 70 48.6% 0 - benign(0.002) tolerated(0.3) neutral(0.029) NULL PPP4R4 57718 genome.wustl.edu 37 14 94708236 94708236 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_058237.1 +1 reviewed p.I363T 0.993 126 0% 76 36.8% 0 - benign(0) tolerated(1) - superfamily_ARM repeat PPP4R4 57718 genome.wustl.edu 37 14 94722796 94722796 + Splice_Site SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_058237.1 +1 reviewed e17-1 1.000 188 0% 96 38.5% 0 - - - - - DICER1 23405 genome.wustl.edu 37 14 95592956 95592956 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030621.3 -1 reviewed p.V288 0.926 114 0% 154 37.7% 0 - - - - superfamily_SSF52540 DYNC1H1 1778 genome.wustl.edu 37 14 102453820 102453820 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001376.4 +1 reviewed p.I857V 1.000 50 0% 62 40.3% 0 - benign(0.003) tolerated(0.42) neutral(0.014) NULL DYNC1H1 1778 genome.wustl.edu 37 14 102457885 102457885 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001376.4 +1 reviewed p.I964L 1.000 66 0% 71 56.3% 0 - benign(0.001) tolerated(0.62) neutral(0.004) NULL ZNF839 55778 genome.wustl.edu 37 14 102807909 102807909 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018335.3 +1 validated p.E726G 0.001 27 0% 39 30.8% 38 73.6% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL TECPR2 9895 genome.wustl.edu 37 14 102843279 102843279 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014844.3 +1 validated e1+2 1.000 23 0% 37 37.8% 0 - - - - - RCOR1 23186 genome.wustl.edu 37 14 103187377 103187377 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015156.2 +1 validated p.K360E 1.000 120 0% 73 28.8% 1 100% benign(0.183) tolerated(0.32) neutral(0.041) NULL CDC42BPB 9578 genome.wustl.edu 37 14 103410364 103410364 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006035.3 -1 reviewed p.F1424 1.000 34 0% 77 40.3% 7 14.2% - - - HMMPfam_CNH,HMMSmart_CNH CDC42BPB 9578 genome.wustl.edu 37 14 103412820 103412820 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006035.3 -1 reviewed p.T1245A 0.019 26 0% 62 43.5% 5 20% benign(0) tolerated(0.79) neutral(0.001) HMMPfam_CNH,HMMSmart_CNH EIF5 1983 genome.wustl.edu 37 14 103802255 103802255 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001969.3 +1 validated p.R20S 1.000 68 0% 268 43.3% 16 25% possibly_damaging(0.748) deleterious(0) deleterious(0.719) HMMPfam_eIF-5_eIF-2B,HMMSmart_SM00653,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain ZFYVE21 79038 genome.wustl.edu 37 14 104198997 104198997 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024071.2 +1 provisional p.T189 0.019 24 0% 119 46.2% 61 49.1% - - - NULL IGHV6-1 28385 genome.wustl.edu 37 14 106405792 106405792 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000390593 -1 known p.Q61R 1.000 74 0% 109 36.7% 2 0% possibly_damaging(0.849) deleterious(0.02) deleterious(0.709) HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin NIPA2 81614 genome.wustl.edu 37 15 23021315 23021315 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001008860.2 -1 reviewed p.Y8H 1.000 165 0% 213 39.9% 1 0% possibly_damaging(0.747) tolerated(0.08) deleterious(0.574) HMMPfam_DUF803 NDN 4692 genome.wustl.edu 37 15 23931749 23931749 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002487.2 -1 reviewed p.R206G 0.518 4 0.000 19 0.474 3 0% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_MAGE C15orf2 23742 genome.wustl.edu 37 15 24923229 24923229 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018958.2 +1 reviewed p.T739A 0.000 38 0% 145 37.2% 0 - benign(0.025) - - NULL GABRG3 2567 genome.wustl.edu 37 15 27573957 27573957 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033223.4 +1 validated p.T166A 1.000 20 0% 63 20.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD HERC2 8924 genome.wustl.edu 37 15 28359943 28359943 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004667.4 -1 reviewed p.D4576 1.000 31 0% 150 45.3% 22 50% - - - HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain HERC2 8924 genome.wustl.edu 37 15 28499609 28499609 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004667.4 -1 reviewed p.A976V 0.985 216 0% 328 49.4% 0 - probably_damaging(0.989) tolerated(0.27) deleterious(0.473) NULL TJP1 7082 genome.wustl.edu 37 15 30026507 30026507 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003257.3 -1 validated p.V496A 1.000 260 0% 299 42.5% 3 0% possibly_damaging(0.889) deleterious(0) deleterious(0.794) superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like MIR211 406993 genome.wustl.edu 37 15 31357268 31357268 + RNA SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000384969 -1 known NULL 1.000 58 0% 73 43.8% 0 - - - - - AVEN 57099 genome.wustl.edu 37 15 34158856 34158856 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020371.2 -1 validated p.T349 0.395 372 0.5% 291 47.8% 7 14.2% - - - NULL C15orf55 256646 genome.wustl.edu 37 15 34647757 34647757 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_175741.1 +1 validated p.G488 0.393 30 0% 117 46.2% 0 - - - - NULL PLCB2 5330 genome.wustl.edu 37 15 40585142 40585142 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004573.2 -1 validated p.N771D 0.664 37 0% 155 34.2% 6 0% benign(0) tolerated(0.65) neutral(0.003) HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) PLCB2 5330 genome.wustl.edu 37 15 40594542 40594542 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004573.2 -1 validated p.A127 0.989 15 0% 46 45.7% 2 0% - - - NULL CASC5 57082 genome.wustl.edu 37 15 40937892 40937892 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_170589.3 +1 validated p.S2002 0.993 146 0% 85 40% 0 - - - - NULL RAD51 5888 genome.wustl.edu 37 15 40993345 40993345 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002875.4 +1 reviewed p.K57N 1.000 122 0% 150 46% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Rad51 N-terminal domain-like EXD1 161829 genome.wustl.edu 37 15 41508949 41508949 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152596.2 -1 provisional p.D44G 0.714 118 0% 137 43.8% 0 - benign(0.147) deleterious(0.03) neutral(0.378) NULL RHOV 171177 genome.wustl.edu 37 15 41555024 41555024 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007236.4 +1 reviewed p.K98E 1.000 90 0% 104 53.8% 14 42.8% benign(0) tolerated(0.38) neutral(0.018) superfamily_EF-hand MIR627 693212 genome.wustl.edu 37 15 42491838 42491838 + RNA SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000384979 -1 known NULL 0.032 102 0% 56 39.3% 0 - - - - - TMEM87A 25963 genome.wustl.edu 37 15 42519082 42519082 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015497.3 -1 validated p.D442G 1.000 23 0% 43 34.9% 7 57.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Lung_7-TM_R ZFP106 64397 genome.wustl.edu 37 15 42731630 42731630 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022473.1 -1 provisional p.K1359R 1.000 48 0% 67 44.8% 1 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL UBR1 197131 genome.wustl.edu 37 15 43237582 43237582 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_174916.2 -1 reviewed p.A1732D 1.000 91 0% 157 49% 9 44.4% probably_damaging(0.975) deleterious(0.01) deleterious(0.823) NULL DUOXA1 90527 genome.wustl.edu 37 15 45411397 45411397 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144565.2 -1 provisional p.S313 0.191 29 0% 75 30.7% 0 - - - - NULL SEMA6D 80031 genome.wustl.edu 37 15 48063429 48063429 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153618.1 +1 reviewed p.N890T 0.422 39 0% 38 52.6% 0 - benign(0) tolerated(0.99) - NULL SLC24A5 283652 genome.wustl.edu 37 15 48434514 48434514 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_205850.2 +1 reviewed p.I490T 1.000 73 0% 91 40.7% 13 46.1% possibly_damaging(0.541) deleterious(0.01) deleterious(0.589) NULL SLC12A1 6557 genome.wustl.edu 37 15 48594976 48594976 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000338.2 +1 reviewed p.I1065R 1.000 161 0% 202 40.1% 0 - possibly_damaging(0.816) deleterious(0) deleterious(0.753) NULL FBN1 2200 genome.wustl.edu 37 15 48773890 48773890 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000138.4 -1 reviewed p.M1309T 1.000 129 0% 144 38.2% 0 - benign(0.122) tolerated(0.29) neutral(0.039) HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin COPS2 9318 genome.wustl.edu 37 15 49420243 49420243 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001143887.1 -1 validated p.D419E 1.000 122 0% 114 33.3% 59 49.1% benign(0.001) tolerated(0.68) neutral(0.002) "HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain" COPS2 9318 genome.wustl.edu 37 15 49426252 49426252 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001143887.1 -1 validated p.D264Y 1.000 165 0% 101 35.6% 9 11.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00753,superfamily_TPR-like USP8 9101 genome.wustl.edu 37 15 50788200 50788200 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001128610.1 +1 validated p.T938 0.995 34 0% 15 46.7% 2 100% - - - HMMPfam_UCH,superfamily_SSF54001 AP4E1 23431 genome.wustl.edu 37 15 51250805 51250805 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007347.3 +1 validated p.I555 0.955 106 0% 57 36.8% 0 - - - - HMMPfam_Adaptin_N,superfamily_ARM-type_fold DMXL2 23312 genome.wustl.edu 37 15 51780829 51780829 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015263.3 -1 validated p.S1656Y 1.000 141 0% 101 38.6% 1 0% unknown(0) deleterious(0) - NULL PIGB 9488 genome.wustl.edu 37 15 55647491 55647491 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004855.4 +1 reviewed p.S509N 0.001 78 0% 51 41.2% 46 39.1% benign(0.009) tolerated(0.54) neutral(0.008) NULL RFX7 64864 genome.wustl.edu 37 15 56385597 56385597 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022841.5 -1 validated p.S1443 0.982 208 0% 108 51.9% 4 75% - - - NULL ZNF280D 54816 genome.wustl.edu 37 15 56993235 56993235 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017661.2 -1 validated p.Y93H 1.000 116 0% 106 34% 13 46.1% possibly_damaging(0.921) tolerated(0.43) neutral(0.385) NULL MYO1E 4643 genome.wustl.edu 37 15 59548563 59548563 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004998.2 -1 validated p.N84K 1.000 109 0% 99 44.4% 2 0% probably_damaging(0.988) tolerated(0.14) deleterious(0.687) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO1E 4643 genome.wustl.edu 37 15 59548571 59548571 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004998.2 -1 validated p.Y82H 1.000 98 0% 91 47.3% 2 100% possibly_damaging(0.505) tolerated(0.1) neutral(0.456) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases BNIP2 663 genome.wustl.edu 37 15 59972498 59972498 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004330.2 -1 reviewed p.P141 1.000 106 0.9% 149 44.3% 4 0% - - - NULL USP3 9960 genome.wustl.edu 37 15 63852161 63852161 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006537.2 +1 validated p.D213 0.049 34 0% 58 34.5% 3 100% - - - HMMPfam_UCH,superfamily_SSF54001 ENSG00000247530 0 genome.wustl.edu 37 15 63880450 63880450 + RNA SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000499437 -1 known NULL 0.000 90 0% 35 42.9% 0 - - - - - HERC1 8925 genome.wustl.edu 37 15 64004979 64004979 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003922.3 -1 reviewed p.A1527T 0.440 45 0% 68 35.3% 1 0% benign(0.004) tolerated(0.14) neutral(0.249) NULL PLEKHO2 80301 genome.wustl.edu 37 15 65157404 65157404 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025201.4 +1 validated p.S264G 0.410 12 0% 24 41.7% 5 40% benign(0.071) tolerated(0.21) neutral(0.049) NULL CLPX 10845 genome.wustl.edu 37 15 65443200 65443200 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006660.3 -1 provisional p.E621D 0.992 106 0% 105 40% 14 42.8% possibly_damaging(0.942) tolerated(0.14) deleterious(0.637) NULL DENND4A 10260 genome.wustl.edu 37 15 65994134 65994134 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001144823.1 -1 validated p.D842G 1.000 80 0% 64 37.5% 2 0% benign(0.075) tolerated(0.08) neutral(0.305) HMMPfam_PPR TLE3 7090 genome.wustl.edu 37 15 70350624 70350624 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005078.2 -1 validated p.K309E 1.000 27 0% 207 43% 7 28.5% possibly_damaging(0.585) deleterious(0.04) deleterious(0.550) NULL UACA 55075 genome.wustl.edu 37 15 70961253 70961253 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018003.2 -1 validated p.R590 0.319 376 0% 244 35.7% 4 50% - - - NULL NR2E3 10002 genome.wustl.edu 37 15 72103888 72103888 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014249.2 +1 reviewed p.Y62H 1.000 10 0% 32 43.8% 2 50% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) MYO9A 4649 genome.wustl.edu 37 15 72189928 72189928 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006901.2 -1 validated p.N1639T 0.190 232 0% 106 42.5% 0 - benign(0.002) tolerated(0.14) neutral(0.249) NULL MYO9A 4649 genome.wustl.edu 37 15 72208709 72208709 + Splice_Site SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006901.2 -1 validated e18+2 1.000 112 0% 108 43.5% 0 - - - - - EDC3 80153 genome.wustl.edu 37 15 74927865 74927865 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142443.1 -1 validated p.N359 1.000 34 0% 84 36.9% 14 42.8% - - - HMMPfam_YjeF_N,superfamily_YjeF N-terminal domain-like CYP1A2 1544 genome.wustl.edu 37 15 75044590 75044590 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000761.3 +1 reviewed e4+2 1.000 28 0% 116 49.1% 0 - - - - - COMMD4 54939 genome.wustl.edu 37 15 75631359 75631359 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017828.3 +1 validated p.L72P 1.000 13 0% 59 49.2% 114 39.4% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_HCaRG CSPG4 1464 genome.wustl.edu 37 15 75968651 75968651 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001897.4 -1 reviewed p.A2070V 1.000 12 0% 22 54.5% 0 - probably_damaging(1) tolerated(0.12) deleterious(0.760) NULL ODF3L1 161753 genome.wustl.edu 37 15 76019677 76019677 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_175881.3 +1 provisional p.P207 0.036 15 0% 71 56.3% 2 50% - - - HMMPfam_DUF1309 SCAPER 49855 genome.wustl.edu 37 15 76866516 76866516 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020843.2 -1 validated p.R940G 0.998 125 0% 96 47.9% 1 0% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL IREB2 3658 genome.wustl.edu 37 15 78768616 78768616 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004136.2 +1 validated p.T370 1.000 190 0% 257 41.2% 0 - - - - HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain ANKRD34C 390616 genome.wustl.edu 37 15 79587035 79587035 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002343327.1 +1 model p.L470P 0.998 87 0% 139 43.2% 0 - benign(0) tolerated(1) - NULL KIAA1024 23251 genome.wustl.edu 37 15 79749400 79749400 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015206.2 +1 validated p.F304C 1.000 38 0% 80 42.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL KIAA1199 57214 genome.wustl.edu 37 15 81173336 81173336 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018689.1 +1 validated p.L159P 1.000 65 0% 70 44.3% 2 100% probably_damaging(0.996) tolerated(0.06) deleterious(0.784) HMMPfam_G8 C15orf26 161502 genome.wustl.edu 37 15 81436010 81436010 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173528.2 +1 predicted p.L162S 0.997 64 0% 101 48.5% 2 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL EFTUD1 79631 genome.wustl.edu 37 15 82519823 82519823 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024580.5 -1 validated p.S387Y 1.000 142 0% 96 41.7% 2 50% probably_damaging(0.984) deleterious(0) deleterious(0.875) superfamily_Translation proteins ALPK3 57538 genome.wustl.edu 37 15 85383121 85383121 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020778.4 +1 validated p.K406R 0.986 8 0.000 30 0.433 2 50% possibly_damaging(0.791) deleterious(0.01) deleterious(0.702) NULL NTRK3 4916 genome.wustl.edu 37 15 88576141 88576141 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001012338.1 -1 reviewed p.I511T 1.000 10 0% 31 32.3% 1 0% probably_damaging(0.954) deleterious(0) deleterious(0.842) NULL ISG20 3669 genome.wustl.edu 37 15 89182826 89182826 + Splice_Site SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002201.4 +1 provisional e1+1 1.000 7 0.000 19 0.474 0 - - - - - FANCI 55215 genome.wustl.edu 37 15 89837159 89837159 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001113378.1 +1 reviewed p.M796T 0.000 171 0% 219 36.5% 3 33.3% benign(0) tolerated(0.7) neutral(0.002) NULL POLG 5428 genome.wustl.edu 37 15 89866735 89866735 + Missense_Mutation SNP C C T rs185645212 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001126131.1 -1 reviewed p.R722H 0.002 25 0% 90 48.9% 9 44.4% benign(0.297) tolerated(0.15) neutral(0.333) superfamily_SSF56672 POLG 5428 genome.wustl.edu 37 15 89872302 89872302 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001126131.1 -1 reviewed p.M299V 1.000 26 0% 131 43.5% 8 37.5% benign(0.002) tolerated(0.82) neutral(0.001) NULL ANPEP 290 genome.wustl.edu 37 15 90347018 90347018 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001150.2 -1 reviewed p.D433Y 1.000 17 0% 91 46.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_M1,superfamily_SSF55486 FES 2242 genome.wustl.edu 37 15 91433712 91433712 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002005.3 +1 reviewed p.S440P 1.000 8 0.000 21 0.381 10 50% probably_damaging(0.999) tolerated(0.16) deleterious(0.550) NULL HDDC3 374659 genome.wustl.edu 37 15 91475039 91475039 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198527.2 -1 provisional p.R102G 1.000 24 0% 144 47.9% 18 55.5% probably_damaging(0.977) deleterious(0.01) deleterious(0.825) HMMSmart_HDc,HMMPfam_HD,superfamily_SSF109604 LOC100288997 100288997 genome.wustl.edu 37 15 91485735 91485735 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_002343396.1 -1 model p.S755G 0.048 38 0% 109 50.5% 8 25% - - - NULL SLCO3A1 28232 genome.wustl.edu 37 15 92459583 92459583 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013272.3 +1 validated p.I181V 1.000 4 0.000 20 0.350 0 - benign(0.073) tolerated(0.98) neutral(0.005) HMMPfam_OATP,superfamily_MFS general substrate transporter MCTP2 55784 genome.wustl.edu 37 15 94858793 94858793 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018349.3 +1 validated p.L188 0.994 43 0% 126 49.2% 0 - - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB) OR4F15 390649 genome.wustl.edu 37 15 102358808 102358808 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001001674.1 +1 provisional p.M140T 0.706 265 0% 130 46.9% 0 - benign(0) tolerated(0.2) neutral(0.049) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ITFG3 83986 genome.wustl.edu 37 16 314832 314832 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000424016 +1 known p.A130D 1.000 11 0% 43 32.6% 68 51.4% - - - NULL NME4 4833 genome.wustl.edu 37 16 449085 449085 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005009.2 +1 validated p.R63G 0.786 28 0% 107 43.9% 104 38.4% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases MSLNL 401827 genome.wustl.edu 37 16 819598 819598 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001025190.1 -1 provisional p.A998T 0.001 12 0% 71 46.5% 0 - possibly_damaging(0.915) deleterious(0) deleterious(0.811) NULL CHTF18 63922 genome.wustl.edu 37 16 847961 847961 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022092.2 +1 validated p.R972G 0.942 6 0.000 41 0.488 86 39.5% probably_damaging(0.994) tolerated(0.14) deleterious(0.702) NULL C16orf42 115939 genome.wustl.edu 37 16 1399527 1399527 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001001410.2 -1 validated p.C284R 0.001 23 0% 65 41.5% 55 14.5% benign(0) tolerated(0.07) neutral(0.319) NULL IFT140 9742 genome.wustl.edu 37 16 1612023 1612023 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014714.3 -1 validated p.L721P 1.000 36 0% 96 45.8% 7 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SRRM2 23524 genome.wustl.edu 37 16 2812626 2812626 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016333.3 +1 validated p.R699 0.860 25 0% 54 40.7% 12 33.3% - - - NULL SRRM2 23524 genome.wustl.edu 37 16 2815105 2815105 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016333.3 +1 validated p.K1526E 0.919 16 0% 69 43.5% 20 40% unknown(0) - - NULL RBFOX1 54715 genome.wustl.edu 37 16 7629782 7629782 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145891.2 +1 reviewed p.T112A 1.000 33 0% 74 40.5% 0 - possibly_damaging(0.946) tolerated(0.25) neutral(0.427) superfamily_SSF54928 TMEM186 25880 genome.wustl.edu 37 16 8890011 8890011 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015421.3 -1 validated p.F147C 1.000 40 0% 147 40.8% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PMM2 5373 genome.wustl.edu 37 16 8898699 8898699 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000303.2 +1 reviewed p.Q85R 1.000 354 0% 219 42% 4 0% possibly_damaging(0.804) deleterious(0.02) deleterious(0.685) HMMPfam_PMM,superfamily_HAD-like LITAF 9516 genome.wustl.edu 37 16 11643525 11643525 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136472.1 -1 reviewed p.R152G 1.000 11 0% 18 27.8% 17 41.1% benign(0.076) tolerated(0.13) neutral(0.258) HMMSmart_SM00714,HMMPfam_zf-LITAF-like ZC3H7A 29066 genome.wustl.edu 37 16 11850096 11850096 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014153.2 -1 provisional p.V853 0.014 349 0% 219 39.3% 19 57.8% - - - NULL ZC3H7A 29066 genome.wustl.edu 37 16 11868150 11868150 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014153.2 -1 provisional p.L282P 1.000 105 0% 99 39.4% 6 16.6% possibly_damaging(0.893) deleterious(0.01) deleterious(0.758) NULL MKL2 57496 genome.wustl.edu 37 16 14307457 14307457 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014048.3 +1 validated p.V111A 1.000 101 0% 79 43% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_RPEL MKL2 57496 genome.wustl.edu 37 16 14342791 14342791 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014048.3 +1 validated p.P702 0.999 42 0% 68 44.1% 2 50% - - - NULL BFAR 51283 genome.wustl.edu 37 16 14755803 14755803 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016561.2 +1 validated p.R280G 0.161 74 0% 105 50.5% 4 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NOMO1 23420 genome.wustl.edu 37 16 14976456 14976456 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014287.3 +1 reviewed p.G1011 0.944 38 0% 73 42.5% 19 15.7% - - - superfamily_Carboxypeptidase regulatory domain SMG1 23049 genome.wustl.edu 37 16 18861568 18861568 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015092.4 -1 reviewed p.N1758 0.875 120 0% 104 42.3% 3 66.6% - - - superfamily_ARM repeat ACSM2B 348158 genome.wustl.edu 37 16 20565101 20565101 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001105069.1 -1 validated p.A246 0.981 33 0% 35 45.7% 0 - - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like THUMPD1 55623 genome.wustl.edu 37 16 20748262 20748262 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017736.3 -1 validated p.K334 0.156 218 0% 185 47% 7 71.4% - - - NULL ERI2 112479 genome.wustl.edu 37 16 20809769 20809769 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142725.1 -1 validated p.E451 0.153 78 0% 57 49.1% 0 - - - - NULL ENSG00000217794 0 genome.wustl.edu 37 16 21559275 21559275 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000403120 -1 known p.V58D 0.005 254 0% 383 19.8% 0 - - - - HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase SCNN1G 6340 genome.wustl.edu 37 16 23224076 23224076 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001039.3 +1 reviewed p.S458G 1.000 31 0% 74 47.3% 8 25% benign(0.277) tolerated(0.16) neutral(0.089) HMMPfam_ASC COG7 91949 genome.wustl.edu 37 16 23424887 23424887 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153603.3 -1 reviewed e10-2 0.997 51 0% 127 42.5% 2 100% - - - - CACNG3 10368 genome.wustl.edu 37 16 24372681 24372681 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006539.2 +1 reviewed p.N149D 1.000 162 0% 86 44.2% 0 - probably_damaging(0.99) tolerated(0.24) deleterious(0.479) HMMPfam_PMP22_Claudin RBBP6 5930 genome.wustl.edu 37 16 24573299 24573299 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006910.4 +1 reviewed p.L369P 0.996 129 0% 230 44.3% 2 50% possibly_damaging(0.88) deleterious(0.02) deleterious(0.726) NULL TNRC6A 27327 genome.wustl.edu 37 16 24802307 24802307 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014494.2 +1 reviewed p.G782R 0.991 34 0% 40 35% 0 - possibly_damaging(0.829) deleterious(0) deleterious(0.759) NULL KIAA0556 23247 genome.wustl.edu 37 16 27752211 27752211 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015202.2 +1 validated p.S865G 0.000 16 0% 41 51.2% 0 - benign(0) tolerated(0.81) neutral(0.001) NULL XPO6 23214 genome.wustl.edu 37 16 28115883 28115883 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015171.2 -1 provisional p.F977S 1.000 16 0% 37 43.2% 47 44.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_ARM repeat ATXN2L 11273 genome.wustl.edu 37 16 28845875 28845875 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_148414.1 +1 reviewed p.P765L 1.000 20 0% 60 45% 87 49.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GDPD3 79153 genome.wustl.edu 37 16 30119577 30119577 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024307.2 -1 validated p.M259R 1.000 15 0% 53 35.8% 11 27.2% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases SRCAP 10847 genome.wustl.edu 37 16 30721017 30721017 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006662.2 +1 validated p.S273P 1.000 39 0% 98 49% 3 66.6% unknown(0) - - NULL FUS 2521 genome.wustl.edu 37 16 31193542 31193542 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000354711 +1 known p.T2I 0.001 46 0% 84 40.5% 0 - - - - NULL C16orf58 64755 genome.wustl.edu 37 16 31503570 31503570 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022744.2 -1 validated p.G393 0.721 8 0.000 50 0.440 25 48% - - - HMMPfam_DUF647 ITFG1 81533 genome.wustl.edu 37 16 47292635 47292635 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030790.3 -1 provisional p.V413A 0.998 262 0% 172 48.3% 3 33.3% benign(0.002) deleterious(0) neutral(0.445) superfamily_SSF69318 ITFG1 81533 genome.wustl.edu 37 16 47345184 47345184 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030790.3 -1 provisional p.D346G 1.000 113 0% 80 40% 3 0% possibly_damaging(0.884) deleterious(0) deleterious(0.789) superfamily_SSF69318 ABCC11 85320 genome.wustl.edu 37 16 48248819 48248819 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032583.3 -1 reviewed p.S407 0.000 46 0% 95 41.1% 0 - - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain LONP2 83752 genome.wustl.edu 37 16 48304097 48304097 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031490.2 +1 provisional p.G385* 1.000 60 0% 49 49% 3 0% - - - HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540 RPGRIP1L 23322 genome.wustl.edu 37 16 53691410 53691410 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015272.2 -1 reviewed p.T512 1.000 127 0% 96 55.2% 0 - - - - NULL CES1 1066 genome.wustl.edu 37 16 55844476 55844476 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001025195.1 -1 reviewed p.D424G 0.100 133 0% 120 33.3% 21 52.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_COesterase,superfamily_SSF53474 NLRC5 84166 genome.wustl.edu 37 16 57111276 57111276 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032206.3 +1 validated p.E1635A 0.003 11 0% 35 57.1% 34 47% benign(0.138) tolerated(0.54) neutral(0.019) HMMSmart_SM00368,HMMSmart_SM00367,superfamily_RNI-like C16orf57 79650 genome.wustl.edu 37 16 58051270 58051270 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024598.2 +1 validated p.H179R 0.985 76 0% 193 46.6% 12 25% probably_damaging(0.964) tolerated(0.24) neutral(0.444) HMMPfam_HVSL CNOT1 23019 genome.wustl.edu 37 16 58621772 58621772 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016284.3 -1 validated p.L74R 1.000 58 0% 132 37.9% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RNU6-21 100302738 genome.wustl.edu 37 16 62221448 62221448 + RNA SNP A A T rs138000756 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000384710 -1 known NULL 0.167 53 0% 32 43.8% 0 - - - - - CDH11 1009 genome.wustl.edu 37 16 64984670 64984670 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001797.2 -1 reviewed p.V632F 1.000 14 0% 17 58.8% 5 0% unknown(0) deleterious(0.01) - NULL NAE1 8883 genome.wustl.edu 37 16 66842482 66842482 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003905.3 -1 reviewed p.V424 0.989 179 0% 171 42.7% 38 34.2% - - - superfamily_Activating enzymes of the ubiquitin-like proteins CES4A 283848 genome.wustl.edu 37 16 67034890 67034890 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173815.4 +1 validated p.L178P 0.807 5 0.000 31 0.419 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_COesterase,superfamily_SSF53474 KCTD19 146212 genome.wustl.edu 37 16 67327902 67327902 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001100915.1 -1 provisional p.Y588C 0.986 60 0% 204 45.1% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL CTCF 10664 genome.wustl.edu 37 16 67645354 67645354 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006565.2 +1 reviewed p.T207P 1.000 52 0% 93 38.7% 2 100% possibly_damaging(0.924) tolerated(0.07) deleterious(0.692) NULL ESRP2 80004 genome.wustl.edu 37 16 68265204 68265204 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024939.2 -1 validated p.K530E 1.000 15 0% 66 27.3% 24 58.3% probably_damaging(0.994) deleterious(0.02) deleterious(0.835) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 NFAT5 10725 genome.wustl.edu 37 16 69726738 69726738 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138713.2 +1 reviewed p.S1004R 1.000 70 0% 72 41.7% 2 50% possibly_damaging(0.69) deleterious(0) deleterious(0.692) NULL HYDIN 54768 genome.wustl.edu 37 16 70868035 70868035 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032821.2 -1 validated p.T4477 0.001 72 0% 51 43.1% 2 100% - - - NULL ZNF23 7571 genome.wustl.edu 37 16 71482554 71482554 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_145911.1 -1 provisional p.S458 0.017 121 0.8% 172 47.7% 31 70.9% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PHLPP2 23035 genome.wustl.edu 37 16 71682988 71682988 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015020.2 -1 validated p.T1259 0.998 56 0% 70 47.1% 0 - - - - NULL ZFHX3 463 genome.wustl.edu 37 16 72832266 72832266 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006885.3 -1 reviewed p.R1439* 1.000 41 0% 127 40.2% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CLEC18B 497190 genome.wustl.edu 37 16 74444603 74444603 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000268492 -1 known p.K8E 0.000 46 0% 305 16.1% 3 66.6% - - - NULL FA2H 79152 genome.wustl.edu 37 16 74753032 74753032 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024306.4 -1 reviewed p.M214V 0.001 10 0% 36 36.1% 1 100% benign(0) tolerated(0.26) neutral(0.034) NULL BCAR1 9564 genome.wustl.edu 37 16 75267742 75267742 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014567.3 -1 validated e6+2 1.000 8 0.000 63 0.365 0 - - - - - BCAR1 9564 genome.wustl.edu 37 16 75276913 75276913 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014567.3 -1 validated p.M30V 1.000 15 0% 66 48.5% 3 33.3% benign(0.03) tolerated(0.16) neutral(0.061) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain PKD1L2 114780 genome.wustl.edu 37 16 81208319 81208319 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000378597 -1 known p.P184 0.000 21 0% 60 38.3% 0 - - - - superfamily_Clathrin adaptor appendage domain PIEZO1 9780 genome.wustl.edu 37 16 88787155 88787155 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000451779 -1 known p.E1427 0.152 87 0% 281 39.9% 1 0% - - - NULL CBFA2T3 863 genome.wustl.edu 37 16 88958729 88958729 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005187.4 -1 reviewed p.T182A 1.000 20 0% 85 47.1% 0 - benign(0.001) tolerated(0.34) neutral(0.023) HMMPfam_TAFH,HMMSmart_SM00549 ACSF3 197322 genome.wustl.edu 37 16 89199611 89199611 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001127214.1 +1 validated p.Y436C 1.000 39 0% 100 52% 9 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AMP-binding,superfamily_SSF56801 CPNE7 27132 genome.wustl.edu 37 16 89655091 89655091 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014427.4 +1 reviewed p.I387 0.786 11 0% 65 40% 0 - - - - HMMSmart_SM00327,superfamily_vWA-like MYO1C 4641 genome.wustl.edu 37 17 1382019 1382019 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080779.1 -1 reviewed p.P368Q 1.000 11 0% 48 56.2% 19 26.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases PRPF8 10594 genome.wustl.edu 37 17 1554502 1554502 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006445.3 -1 reviewed p.Y2251 1.000 14 0% 54 38.9% 302 41% - - - HMMPfam_PROCT TSR1 55720 genome.wustl.edu 37 17 2238043 2238043 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018128.4 -1 validated p.Q235R 1.000 34 0% 105 46.7% 4 0% possibly_damaging(0.736) tolerated(1) neutral(0.269) HMMPfam_AARP2CN,HMMSmart_AARP2CN SGSM2 9905 genome.wustl.edu 37 17 2274573 2274573 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014853.2 +1 validated p.E481K 1.000 5 0.000 30 0.367 19 47.3% benign(0.002) tolerated(0.2) neutral(0.049) NULL SPNS2 124976 genome.wustl.edu 37 17 4439616 4439616 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001124758.1 +1 provisional p.L501P 1.000 11 0% 65 32.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_MFS_gen_substrate_transporter ALOX15 246 genome.wustl.edu 37 17 4536481 4536481 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001140.3 -1 validated p.Y460H 1.000 30 0% 113 44.2% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_Lipoxygenase,superfamily_Lipoxygenase SLC25A11 8402 genome.wustl.edu 37 17 4842102 4842102 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003562.4 -1 validated p.P139 1.000 16 0% 72 40.3% 40 45% - - - superfamily_Mitochondrial carrier,HMMPfam_Mito_carr KIF1C 10749 genome.wustl.edu 37 17 4904581 4904581 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006612.5 +1 validated p.L83P 0.968 15 0% 75 42.7% 4 0% possibly_damaging(0.901) tolerated(0.21) neutral(0.401) HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 KIF1C 10749 genome.wustl.edu 37 17 4905794 4905794 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006612.5 +1 validated p.R155 0.997 37 0% 105 42.9% 1 100% - - - HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 USP6 9098 genome.wustl.edu 37 17 5049440 5049440 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004505.2 +1 validated p.L764 1.000 292 0.3% 310 42.3% 0 - - - - HMMPfam_UCH,superfamily_Cysteine proteinases FAM64A 54478 genome.wustl.edu 37 17 6350937 6350937 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019013.1 +1 provisional p.H150R 0.000 9 0.000 36 0.417 2 100% benign(0.099) tolerated(0.88) neutral(0.007) HMMPfam_DUF1466 FAM64A 54478 genome.wustl.edu 37 17 6352705 6352705 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019013.1 +1 provisional p.E222* 0.059 47 0% 164 14.6% 1 0% - - - HMMPfam_DUF1466 PITPNM3 83394 genome.wustl.edu 37 17 6375977 6375977 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031220.3 -1 reviewed p.A477T 0.998 22 0% 62 37.1% 1 0% possibly_damaging(0.484) tolerated(0.16) neutral(0.220) HMMPfam_DDHD C17orf81 23587 genome.wustl.edu 37 17 7155868 7155868 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015362.3 +1 validated p.E16G 0.087 8 0.000 51 0.235 14 50% possibly_damaging(0.949) deleterious(0.03) deleterious(0.758) NULL SHBG 6462 genome.wustl.edu 37 17 7535297 7535297 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001040.3 +1 reviewed p.E272D 0.010 28 0% 88 40.9% 0 - possibly_damaging(0.81) tolerated(0.09) deleterious(0.601) superfamily_Concanavalin A-like lectins/glucanases DNAH2 146754 genome.wustl.edu 37 17 7674100 7674100 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020877.2 +1 validated p.E1404G 1.000 34 0% 57 54.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DHC_N2 CHD3 1107 genome.wustl.edu 37 17 7803995 7803995 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005271.2 +1 reviewed p.N1034S 1.000 32 0% 91 34.1% 18 44.4% benign(0.039) - - HMMPfam_SNF2_N CHD3 1107 genome.wustl.edu 37 17 7806042 7806042 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001005271.2 +1 reviewed p.N1182D 1.000 73 0% 234 44% 38 55.2% probably_damaging(1) - - HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases CNTROB 116840 genome.wustl.edu 37 17 7847916 7847916 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000380262 +1 known p.N565S 0.002 19 0% 51 43.1% 30 43.3% benign(0) tolerated(0.11) neutral(0.272) NULL ALOX12B 242 genome.wustl.edu 37 17 7977001 7977001 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001139.2 -1 reviewed p.K577E 1.000 21 0% 72 38.9% 2 100% benign(0.006) tolerated(0.07) neutral(0.319) HMMPfam_Lipoxygenase,superfamily_Lipoxygenase DNAH9 1770 genome.wustl.edu 37 17 11757424 11757424 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001372.3 +1 reviewed p.K3204 1.000 55 0% 43 46.5% 0 - - - - NULL ZNF18 7566 genome.wustl.edu 37 17 11881572 11881572 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144680.2 -1 provisional p.F451S 0.748 149 0% 86 43% 11 36.3% possibly_damaging(0.728) deleterious(0) deleterious(0.710) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers MAP2K4 6416 genome.wustl.edu 37 17 11984782 11984782 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003010.2 +1 reviewed p.R110* 1.000 75 0% 70 47.1% 2 0% - - - HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase NCOR1 9611 genome.wustl.edu 37 17 15976751 15976751 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006311.2 -1 reviewed p.P1268L 0.993 140 0% 116 48.3% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF624 57547 genome.wustl.edu 37 17 16525866 16525866 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020787.2 -1 validated p.K778N 0.989 160 0.6% 207 45.4% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) superfamily_C2H2 and C2HC zinc fingers CCDC144A 9720 genome.wustl.edu 37 17 16631003 16631003 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014695.1 +1 provisional p.L685S 0.976 560 0% 278 30.2% 0 - probably_damaging(0.976) tolerated(0.36) neutral(0.438) NULL KRT17P1 147228 genome.wustl.edu 37 17 16746227 16746227 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000399211 -1 known p.D273 0.883 23 0% 94 44.7% 0 - - - - superfamily_Prefoldin,HMMPfam_Filament MPRIP 23164 genome.wustl.edu 37 17 17076018 17076018 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015134.2 +1 validated p.E773G 1.000 9 0.000 35 0.457 30 43.3% probably_damaging(0.999) tolerated(0.09) deleterious(0.787) NULL COPS3 8533 genome.wustl.edu 37 17 17150843 17150843 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003653.2 -1 reviewed p.L390P 1.000 94 0% 97 42.3% 67 46.2% possibly_damaging(0.938) deleterious(0) deleterious(0.828) NULL FLII 2314 genome.wustl.edu 37 17 18151970 18151970 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002018.2 -1 reviewed p.Q695R 1.000 13 0% 64 50% 20 45% possibly_damaging(0.947) deleterious(0) deleterious(0.835) HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753 MFAP4 4239 genome.wustl.edu 37 17 19290380 19290380 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000395592 -1 known p.K18E 0.000 4 0.000 28 0.357 0 - unknown(0) - - NULL SPECC1 92521 genome.wustl.edu 37 17 20108893 20108893 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001033553.1 +1 validated p.R511C 0.000 61 0% 63 58.7% 2 0% benign(0) tolerated(0.1) neutral(0.286) NULL KCNJ12 3768 genome.wustl.edu 37 17 21319602 21319602 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021012.4 +1 validated p.Y316* 1.000 33 0% 92 15.2% 0 - - - - HMMPfam_IRK,superfamily_Ig_E-set POLDIP2 26073 genome.wustl.edu 37 17 26681587 26681587 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015584.3 -1 reviewed p.Y89H 1.000 28 0% 94 52.1% 15 60% - - - NULL SPAG5 10615 genome.wustl.edu 37 17 26919674 26919674 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006461.3 -1 reviewed p.E196D 0.001 79 0% 117 37.6% 1 0% benign(0) tolerated(1) - NULL PIPOX 51268 genome.wustl.edu 37 17 27380065 27380065 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016518.2 +1 validated p.N131D 0.975 43 0% 71 31% 1 100% benign(0.001) tolerated(0.32) neutral(0.024) HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain MYO18A 399687 genome.wustl.edu 37 17 27401871 27401871 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_078471.3 -1 validated p.D2028N 0.810 51 0% 226 40.3% 44 34% benign(0.15) deleterious(0.05) neutral(0.358) NULL MYO18A 399687 genome.wustl.edu 37 17 27493891 27493891 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_078471.3 -1 validated p.E23G 1.000 74 0% 130 36.2% 3 33.3% benign(0.235) deleterious(0.01) neutral(0.429) NULL SSH2 85464 genome.wustl.edu 37 17 27963197 27963197 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033389.2 -1 reviewed p.E657G 1.000 45 0% 77 37.7% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC6A4 6532 genome.wustl.edu 37 17 28530338 28530338 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001045.4 -1 reviewed p.L557P 1.000 99 1% 117 35.9% 0 - possibly_damaging(0.912) deleterious(0.01) deleterious(0.769) HMMPfam_SNF ATAD5 79915 genome.wustl.edu 37 17 29161721 29161721 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024857.3 +1 provisional p.R208G 1.000 53 0% 48 43.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ATAD5 79915 genome.wustl.edu 37 17 29195412 29195412 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024857.3 +1 provisional p.R1099G 1.000 274 0% 168 48.8% 2 50% possibly_damaging(0.511) deleterious(0.03) deleterious(0.536) superfamily_P-loop containing nucleoside triphosphate hydrolases EVI2B 2124 genome.wustl.edu 37 17 29632596 29632596 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006495.3 -1 validated p.F11C 0.997 158 0% 162 40.1% 1 0% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL SUZ12 23512 genome.wustl.edu 37 17 30325846 30325846 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015355.2 +1 reviewed p.R682C 1.000 54 0% 69 43.5% 4 25% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL SPACA3 124912 genome.wustl.edu 37 17 31323885 31323885 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173847.3 +1 provisional p.S123N 0.989 14 0% 60 50% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lys,HMMSmart_SM00263,superfamily_Lysozyme-like CCT6B 10693 genome.wustl.edu 37 17 33281539 33281539 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006584.2 -1 reviewed p.V139A 0.961 452 0% 260 42.7% 1 100% benign(0.012) tolerated(0.08) neutral(0.300) HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like FNDC8 54752 genome.wustl.edu 37 17 33448912 33448912 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017559.2 +1 validated p.I67T 0.009 39 0% 109 38.5% 0 - benign(0.119) tolerated(0.58) neutral(0.014) NULL SLFN11 91607 genome.wustl.edu 37 17 33680430 33680430 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001104587.1 -1 validated p.I616N 0.997 89 0% 137 25.5% 6 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_P-loop containing nucleoside triphosphate hydrolases SLFN13 146857 genome.wustl.edu 37 17 33768699 33768699 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144682.5 -1 validated p.G602V 0.998 86 0% 141 29.8% 9 88.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases ENSG00000174093 0 genome.wustl.edu 37 17 36357258 36357258 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000312412 -1 known p.L332P 1.000 301 0% 373 11% 18 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) "HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain" GPR179 440435 genome.wustl.edu 37 17 36482655 36482655 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004334.2 -1 validated p.F2266S 0.000 39 0% 76 40.8% 0 - benign(0.014) deleterious(0) neutral(0.445) NULL GPR179 440435 genome.wustl.edu 37 17 36483325 36483325 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004334.2 -1 validated p.E2043* 0.024 74 0% 159 47.2% 0 - - - - NULL CDK12 51755 genome.wustl.edu 37 17 37646908 37646908 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016507.2 +1 validated p.G677D 1.000 86 0% 92 47.8% 2 50% unknown(0) deleterious(0) - NULL PSMD3 5709 genome.wustl.edu 37 17 38146041 38146041 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002809.2 +1 reviewed p.G246R 1.000 5 0.000 29 0.379 31 38.7% probably_damaging(0.959) deleterious(0.02) deleterious(0.786) HMMSmart_SM00753,superfamily_TPR-like MED24 9862 genome.wustl.edu 37 17 38184193 38184193 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014815.3 -1 reviewed p.N472 1.000 37 0% 148 37.8% 8 100% - - - NULL MSL1 339287 genome.wustl.edu 37 17 38282492 38282492 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001012241.1 +1 validated p.N12 0.997 67 0% 174 45.4% 46 39.1% - - - NULL TOP2A 7153 genome.wustl.edu 37 17 38573074 38573074 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001067.2 -1 reviewed p.R32I 1.000 750 0% 561 42.8% 0 - probably_damaging(0.96) deleterious(0.02) deleterious(0.786) superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase KRT25 147183 genome.wustl.edu 37 17 38910671 38910671 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181534.3 -1 reviewed p.N160T 1.000 41 0% 49 32.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament KRT26 353288 genome.wustl.edu 37 17 38927448 38927448 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181539.4 -1 reviewed p.Q161R 0.822 46 0% 54 50% 0 - probably_damaging(0.995) deleterious(0.03) deleterious(0.822) HMMPfam_Filament KRT23 25984 genome.wustl.edu 37 17 39084545 39084545 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015515.3 -1 reviewed p.E289G 1.000 106 0% 117 37.6% 69 47.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Filament KRT33A 3883 genome.wustl.edu 37 17 39503148 39503148 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004138.2 -1 reviewed p.L275P 1.000 44 0% 174 43.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament KRT15 3866 genome.wustl.edu 37 17 39670293 39670293 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002275.3 -1 reviewed p.S451 0.451 64 0% 111 45.9% 0 - - - - NULL BRCA1 672 genome.wustl.edu 37 17 41234570 41234570 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007294.3 -1 reviewed p.N1403S 1.000 92 0% 61 50.8% 2 50% probably_damaging(0.998) tolerated(0.3) deleterious(0.503) NULL NBR1 4077 genome.wustl.edu 37 17 41342673 41342673 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005899.3 +1 reviewed p.Y248C 0.921 62 0% 134 44% 8 37.5% benign(0.091) tolerated(0.17) neutral(0.066) HMMSmart_ZnF_ZZ MPP2 4355 genome.wustl.edu 37 17 41958851 41958851 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005374.3 -1 reviewed p.N263I 1.000 17 0% 72 43.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2 FAM171A2 284069 genome.wustl.edu 37 17 42433956 42433956 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198475.2 -1 validated p.G147V 1.000 4 0.000 25 0.480 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UPF0560 NSF 4905 genome.wustl.edu 37 17 44791319 44791319 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006178.2 +1 validated p.F576L 1.000 108 0% 122 45.1% 3 0% benign(0) tolerated(0.19) neutral(0.050) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases C17orf57 124989 genome.wustl.edu 37 17 45517904 45517904 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152347.3 +1 provisional p.L916I 0.006 157 0% 59 33.9% 0 - benign(0.29) - - NULL KPNB1 3837 genome.wustl.edu 37 17 45755410 45755410 + Splice_Site SNP A A G rs113514851 TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000290158 +1 known e18-2 1.000 182 0% 147 38.8% 1 100% - - - - PDK2 5164 genome.wustl.edu 37 17 48184163 48184163 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002611.3 +1 provisional p.I175V 0.998 28 0% 134 40.3% 11 9% benign(0) tolerated(0.33) neutral(0.024) HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain PDK2 5164 genome.wustl.edu 37 17 48185540 48185540 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002611.3 +1 provisional p.I236V 0.902 37 0% 169 42% 7 42.8% benign(0.003) tolerated(0.13) neutral(0.253) superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase TMEM92 162461 genome.wustl.edu 37 17 48356591 48356591 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153229.2 +1 validated p.T134 0.076 30 0% 76 51.3% 7 57.1% - - - NULL MYCBPAP 84073 genome.wustl.edu 37 17 48594726 48594726 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032133.4 +1 validated p.K136E 0.092 81 0% 120 42.5% 0 - possibly_damaging(0.868) tolerated(0.07) deleterious(0.656) NULL CACNA1G 8913 genome.wustl.edu 37 17 48653082 48653082 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018896.3 +1 validated p.L440P 1.000 13 0% 50 48% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL LUC7L3 51747 genome.wustl.edu 37 17 48822025 48822025 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006107.3 +1 reviewed p.F182I 1.000 102 0% 76 51.3% 20 50% unknown(0) tolerated(0.46) - HMMPfam_LUC7 PCTP 58488 genome.wustl.edu 37 17 53851173 53851173 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021213.2 +1 validated p.L143P 0.106 10 0% 20 20% 6 0% possibly_damaging(0.859) tolerated(0.08) deleterious(0.632) HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like ANKFN1 162282 genome.wustl.edu 37 17 54520211 54520211 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153228.2 +1 validated p.Q342R 0.993 94 0% 55 40% 0 - benign(0) tolerated(1) - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III BZRAP1 9256 genome.wustl.edu 37 17 56387932 56387932 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004758.2 -1 validated p.P1214S 0.003 5 0.000 19 0.368 18 61.1% possibly_damaging(0.906) deleterious(0.01) deleterious(0.765) NULL CLTC 1213 genome.wustl.edu 37 17 57738935 57738935 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004859.3 +1 reviewed p.L433 1.000 61 0% 34 47.1% 8 50% - - - superfamily_ARM repeat HEATR6 63897 genome.wustl.edu 37 17 58147136 58147136 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022070.4 -1 validated p.Q292P 1.000 115 0% 193 48.2% 1 0% unknown(0) deleterious(0.04) - NULL PPM1D 8493 genome.wustl.edu 37 17 58740479 58740479 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003620.2 +1 reviewed p.Q462* 0.972 44 0% 57 38.6% 7 57.1% - - - NULL BRIP1 83990 genome.wustl.edu 37 17 59857756 59857756 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032043.1 -1 reviewed p.S601P 1.000 66 0% 50 34% 0 - probably_damaging(0.996) tolerated(0.07) deleterious(0.780) NULL MRC2 9902 genome.wustl.edu 37 17 60757538 60757538 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006039.3 +1 validated p.Y769C 1.000 24 0% 144 37.5% 5 20% probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like TANC2 26115 genome.wustl.edu 37 17 61498142 61498142 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025185.3 +1 validated p.Q1600R 1.000 15 0% 33 42.4% 0 - possibly_damaging(0.806) deleterious(0) deleterious(0.748) NULL FTSJ3 117246 genome.wustl.edu 37 17 61897653 61897653 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017647.3 -1 reviewed p.K740E 1.000 73 0% 157 50.3% 49 34.6% benign(0.388) deleterious(0.01) deleterious(0.530) HMMPfam_Spb1_C SCN4A 6329 genome.wustl.edu 37 17 62019253 62019253 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000334.4 -1 reviewed p.R1463 0.212 50 0% 82 48.8% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ERN1 2081 genome.wustl.edu 37 17 62145553 62145553 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001433.3 -1 reviewed p.Y193H 1.000 28 0% 66 56.1% 0 - probably_damaging(0.998) tolerated(0.1) deleterious(0.761) superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564 PRKCA 5578 genome.wustl.edu 37 17 64738862 64738862 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002737.2 +1 reviewed p.D503G 1.000 66 0% 90 40% 1 0% possibly_damaging(0.555) deleterious(0.04) deleterious(0.538) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PITPNC1 26207 genome.wustl.edu 37 17 65683182 65683182 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181671.1 +1 reviewed p.D228G 1.000 74 0% 58 31% 74 28.3% benign(0) tolerated(1) - HMMPfam_IP_trans,superfamily_SSF55961 NOL11 25926 genome.wustl.edu 37 17 65722742 65722742 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015462.3 +1 provisional p.G277 0.912 36 0% 78 48.7% 3 33.3% - - - NULL ABCA9 10350 genome.wustl.edu 37 17 67014722 67014722 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_080283.3 -1 reviewed e19-2 0.942 101 0% 53 47.2% 0 - - - - - C17orf80 55028 genome.wustl.edu 37 17 71232499 71232499 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017941.4 +1 validated p.M293T 0.000 56 0% 97 41.2% 0 - benign(0) tolerated(0.19) neutral(0.050) NULL CASKIN2 57513 genome.wustl.edu 37 17 73501922 73501922 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020753.3 -1 validated p.E272G 1.000 24 0% 128 48.4% 1 100% probably_damaging(0.972) deleterious(0) deleterious(0.859) superfamily_Ankyrin repeat ACOX1 51 genome.wustl.edu 37 17 73947627 73947627 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004035.6 -1 reviewed p.T326P 1.000 46 0% 78 47.4% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_AcylCoADH_C_like ST6GALNAC1 55808 genome.wustl.edu 37 17 74621989 74621989 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018414.3 -1 validated p.S506Y 1.000 21 0% 141 40.4% 7 57.1% probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_Glyco_transf_29 TK1 7083 genome.wustl.edu 37 17 76170965 76170965 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003258.4 -1 validated p.S194P 0.000 7 0.000 75 0.467 27 37% benign(0) tolerated(0.39) neutral(0.016) NULL USP36 57602 genome.wustl.edu 37 17 76794532 76794532 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025090.3 -1 validated p.A1114 0.105 138 0% 252 35.3% 13 53.8% - - - NULL USP36 57602 genome.wustl.edu 37 17 76798457 76798457 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025090.3 -1 validated p.S991P 0.000 10 0% 52 38.5% 7 42.8% possibly_damaging(0.951) tolerated(0.21) neutral(0.438) NULL RNF213 57674 genome.wustl.edu 37 17 78320349 78320349 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000508628 +1 known p.L2738 0.184 7 0.000 29 0.483 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases RPTOR 57521 genome.wustl.edu 37 17 78857725 78857725 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020761.2 +1 reviewed p.S599R 1.000 5 0.000 31 0.516 1 0% possibly_damaging(0.916) tolerated(0.07) deleterious(0.686) HMMPfam_HEAT,superfamily_ARM repeat GPS1 2873 genome.wustl.edu 37 17 80012391 80012391 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_212492.1 +1 reviewed p.L145P 1.000 5 0.000 10 0.500 46 58.6% benign(0.03) tolerated(0.18) neutral(0.058) NULL C17orf101 79701 genome.wustl.edu 37 17 80352205 80352205 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_175902.4 -1 validated e9+2 0.005 17 0% 73 32.9% 0 - - - - - C17orf62 79415 genome.wustl.edu 37 17 80402347 80402347 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001033046.2 -1 validated p.Q140R 1.000 22 0% 89 42.7% 120 38.3% unknown(0) - - NULL TBCD 6904 genome.wustl.edu 37 17 80730377 80730377 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005993.4 +1 reviewed p.V211A 0.997 91 1.1% 268 41% 4 25% possibly_damaging(0.903) tolerated(0.5) neutral(0.368) superfamily_ARM repeat ZNF750 79755 genome.wustl.edu 37 17 80788173 80788173 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024702.2 -1 reviewed p.M673V 0.001 24 0% 121 36.4% 0 - benign(0.002) tolerated(0.1) neutral(0.286) NULL SMCHD1 23347 genome.wustl.edu 37 18 2726478 2726478 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015295.2 +1 validated p.G910D 0.998 78 0% 35 45.7% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL SMCHD1 23347 genome.wustl.edu 37 18 2729330 2729330 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015295.2 +1 validated p.S991G 0.924 185 0% 89 44.9% 1 100% benign(0.001) tolerated(1) - NULL SMCHD1 23347 genome.wustl.edu 37 18 2762176 2762177 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015295.2 +1 validated p.N1504fs 1.000:0.998 - - - - - - - - - NULL MYOM1 8736 genome.wustl.edu 37 18 3193912 3193912 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003803.3 -1 reviewed p.L112S 0.916 122 0% 158 39.9% 0 - possibly_damaging(0.527) deleterious(0) deleterious(0.623) NULL LAMA1 284217 genome.wustl.edu 37 18 6992661 6992661 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005559.2 -1 validated p.N1689K 0.005 219 0% 141 44% 0 - possibly_damaging(0.825) tolerated(0.47) neutral(0.324) superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I PPP4R1 9989 genome.wustl.edu 37 18 9588141 9588141 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001042388.1 -1 validated p.L177 0.956 30 0% 40 57.5% 7 57.1% - - - superfamily_ARM repeat TUBB6 84617 genome.wustl.edu 37 18 12325590 12325590 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032525.1 +1 provisional p.P268S 1.000 9 0.000 37 0.378 8 0% benign(0.068) deleterious(0) neutral(0.449) superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C CEP192 55125 genome.wustl.edu 37 18 13049107 13049107 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032142.3 +1 validated p.S177G 1.000 120 0% 73 43.8% 0 - benign(0.247) tolerated(0.34) neutral(0.048) NULL RNMT 8731 genome.wustl.edu 37 18 13734532 13734532 + Nonsense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003799.1 +1 provisional p.K163* 0.980 293 0.3% 260 46.2% 0 - - - - HMMPfam_Pox_MCEL POTEC 388468 genome.wustl.edu 37 18 14511769 14511769 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000444806 -1 known p.N585K 0.016 396 0% 124 32.3% 0 - - - - NULL ANKRD30B 374860 genome.wustl.edu 37 18 14828290 14828290 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145029.1 +1 validated p.S800 0.237 130 0% 95 45.3% 0 - - - - NULL ESCO1 114799 genome.wustl.edu 37 18 19147946 19147946 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052911.2 -1 validated p.F547S 1.000 63 0% 70 52.9% 3 66.6% benign(0) tolerated(0.08) neutral(0.300) NULL ZNF521 25925 genome.wustl.edu 37 18 22805107 22805107 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015461.2 -1 validated p.L925 1.000 148 0% 98 41.8% 1 0% - - - NULL DSG4 147409 genome.wustl.edu 37 18 28989448 28989448 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001134453.1 +1 reviewed p.K656R 1.000 30 0% 100 37% 0 - probably_damaging(0.965) deleterious(0.02) deleterious(0.790) NULL DSG2 1829 genome.wustl.edu 37 18 29116235 29116235 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001943.3 +1 reviewed p.T498 0.003 88 0% 34 44.1% 0 - - - - superfamily_Cadherin DSG2 1829 genome.wustl.edu 37 18 29126623 29126623 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001943.3 +1 reviewed p.E1092* 0.273 49 0% 42 42.9% 6 50% - - - NULL TRAPPC8 22878 genome.wustl.edu 37 18 29444733 29444733 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014939.3 -1 validated p.L868 0.978 138 0% 63 30.2% 1 0% - - - NULL C18orf34 374864 genome.wustl.edu 37 18 30846939 30846939 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001105528.1 -1 validated p.T450 0.011 201 0% 110 44.5% 0 - - - - NULL ASXL3 80816 genome.wustl.edu 37 18 31323701 31323701 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030632.1 +1 provisional p.P1297T 1.000 58 0% 64 37.5% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL DTNA 1837 genome.wustl.edu 37 18 32335965 32335965 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001390.4 +1 reviewed p.G9* 1.000 175 0% 156 42.9% 0 - - - - NULL MOCOS 55034 genome.wustl.edu 37 18 33800073 33800073 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017947.2 +1 validated p.V618A 1.000 48 0% 69 36.2% 4 25% probably_damaging(0.984) deleterious(0.01) deleterious(0.836) HMMPfam_MOSC_N,superfamily_PK beta-barrel domain-like SYT4 6860 genome.wustl.edu 37 18 40853691 40853691 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020783.3 -1 validated p.E235* 1.000 178 0% 69 37.7% 0 - - - - HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB SETBP1 26040 genome.wustl.edu 37 18 42529864 42529864 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015559.2 +1 validated p.K187E 1.000 29 0% 56 42.9% 0 - probably_damaging(0.996) tolerated(0.1) deleterious(0.748) NULL SETBP1 26040 genome.wustl.edu 37 18 42532672 42532672 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015559.2 +1 validated p.M1123V 1.000 41 0% 37 35.1% 0 - possibly_damaging(0.891) tolerated(0.11) deleterious(0.622) NULL HAUS1 115106 genome.wustl.edu 37 18 43698200 43698200 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138443.3 +1 validated p.L87F 0.996 112 0% 143 39.9% 15 13.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LOXHD1 125336 genome.wustl.edu 37 18 44137348 44137348 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144612.6 -1 reviewed p.I829M 0.989 71 0% 182 43.4% 0 - benign(0.429) deleterious(0.01) deleterious(0.545) HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase MYO5B 4645 genome.wustl.edu 37 18 47404157 47404157 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080467.2 -1 reviewed p.T1124 0.003 160 0% 133 33.8% 1 0% - - - NULL ELAC1 55520 genome.wustl.edu 37 18 48510509 48510509 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018696.2 +1 validated p.H67Q 0.990 52 0% 52 44.2% 1 100% probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMPfam_Lactamase_B,superfamily_SSF56281 C18orf54 162681 genome.wustl.edu 37 18 51900604 51900604 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173529.4 +1 validated p.S332 0.971 85 0% 45 33.3% 0 - - - - NULL TCF4 6925 genome.wustl.edu 37 18 52927190 52927190 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001083962.1 -1 reviewed p.P353 0.159 127 0% 81 45.7% 1 0% - - - NULL ALPK2 115701 genome.wustl.edu 37 18 56171353 56171353 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052947.3 -1 validated p.R2019 0.960 75 0% 80 50% 1 0% - - - HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like) ALPK2 115701 genome.wustl.edu 37 18 56246698 56246698 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052947.3 -1 validated p.Q437P 0.784 78 0% 99 62.6% 0 - probably_damaging(0.96) deleterious(0.01) deleterious(0.808) NULL ALPK2 115701 genome.wustl.edu 37 18 56247586 56247586 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052947.3 -1 validated p.D141V 0.002 445 0% 274 35% 0 - possibly_damaging(0.922) deleterious(0) deleterious(0.816) NULL CPLX4 339302 genome.wustl.edu 37 18 56985537 56985537 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181654.3 -1 reviewed p.I53S 1.000 240 0.4% 243 49% 0 - benign(0.155) deleterious(0.03) neutral(0.378) NULL SERPINB4 6318 genome.wustl.edu 37 18 61310452 61310452 + Splice_Site SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002974.2 -1 validated e2-1 0.815 175 0% 89 43.8% 0 - - - - - HMSD 284293 genome.wustl.edu 37 18 61621713 61621713 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001123366.1 +1 validated p.A48 0.002 167 0% 246 39% 1 0% unknown(0) - - HMMPfam_Serpin,superfamily_Serpins CDH19 28513 genome.wustl.edu 37 18 64218473 64218473 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021153.2 -1 reviewed p.K211 0.961 97 0% 99 40.4% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin SOCS6 9306 genome.wustl.edu 37 18 67992422 67992422 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004232.3 +1 reviewed p.K173T 1.000 22 0% 26 38.5% 6 50% possibly_damaging(0.753) deleterious(0) deleterious(0.721) NULL NFATC1 4772 genome.wustl.edu 37 18 77170598 77170598 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_172387.1 +1 reviewed p.R95K 0.998 10 0% 49 38.8% 0 - probably_damaging(0.99) tolerated(0.43) neutral(0.455) NULL MIER2 54531 genome.wustl.edu 37 19 327892 327892 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017550.1 -1 provisional p.P114L 0.025 25 0% 133 42.1% 13 76.9% benign(0.025) deleterious(0.04) neutral(0.350) NULL C19orf6 91304 genome.wustl.edu 37 19 1011471 1011471 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001033026.1 -1 validated p.F371S 1.000 5 0.000 48 0.396 238 44.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Membralin CNN2 1265 genome.wustl.edu 37 19 1032576 1032576 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004368.2 +1 reviewed p.F91L 1.000 25 0% 109 40.4% 46 30.4% probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain SBNO2 22904 genome.wustl.edu 37 19 1120001 1120001 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014963.2 -1 validated p.K391E 1.000 14 0% 67 43.3% 30 33.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF555 148254 genome.wustl.edu 37 19 2853352 2853352 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152791.4 +1 validated p.G430V 1.000 67 0% 88 46.6% 2 0% possibly_damaging(0.895) deleterious(0) deleterious(0.797) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers GIPC3 126326 genome.wustl.edu 37 19 3590066 3590066 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133261.2 +1 validated p.T273S 0.986 5 0.000 62 0.452 0 - benign(0) tolerated(0.76) neutral(0.001) NULL C19orf29 58509 genome.wustl.edu 37 19 3623847 3623847 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080543.1 -1 validated p.E161K 1.000 11 0% 48 50% 6 33.3% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL SH3GL1 6455 genome.wustl.edu 37 19 4365610 4365610 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003025.2 -1 provisional p.K67M 1.000 12 0% 104 47.1% 16 31.2% possibly_damaging(0.933) deleterious(0) deleterious(0.824) HMMPfam_BAR,HMMSmart_SM00721 CHAF1A 10036 genome.wustl.edu 37 19 4409033 4409033 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005483.2 +1 validated p.C79 0.685 23 0% 92 47.8% 1 100% - - - NULL DPP9 91039 genome.wustl.edu 37 19 4694700 4694700 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_139159.4 -1 reviewed p.W497R 1.000 15 0% 48 29.2% 8 25% benign(0.004) tolerated(0.53) neutral(0.007) HMMPfam_DPPIV_N,superfamily_SSF82171 KDM4B 23030 genome.wustl.edu 37 19 5119850 5119850 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015015.2 +1 validated p.A434 0.641 8 0.000 17 0.353 7 42.8% - - - NULL SAFB 6294 genome.wustl.edu 37 19 5654435 5654435 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002967.2 +1 reviewed p.I575V 0.998 79 0% 158 46.2% 48 43.7% benign(0.113) tolerated(0.34) neutral(0.032) superfamily_SSF54928 HSD11B1L 374875 genome.wustl.edu 37 19 5687366 5687366 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198533.1 +1 provisional p.V161A 1.000 5 0.000 31 0.419 10 40% benign(0.18) tolerated(0.09) neutral(0.313) HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains RFX2 5990 genome.wustl.edu 37 19 6004311 6004311 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000635.3 -1 reviewed e12-2 1.000 30 0% 129 39.5% 0 - - - - - RFX2 5990 genome.wustl.edu 37 19 6013034 6013034 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000635.3 -1 reviewed p.M288V 1.000 9 0.000 28 0.464 2 0% benign(0.001) tolerated(0.52) neutral(0.009) NULL C3 718 genome.wustl.edu 37 19 6709834 6709834 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000064.2 -1 reviewed p.Q569R 0.000 12 0% 60 25% 6 0% benign(0) tolerated(0.55) neutral(0.007) HMMPfam_A2M_N_2 GPR108 56927 genome.wustl.edu 37 19 6731112 6731112 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080452.1 -1 provisional p.E482G 1.000 6 0.000 62 0.532 241 32.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lung_7-TM_R VAV1 7409 genome.wustl.edu 37 19 6854092 6854092 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005428.2 +1 reviewed p.G823R 1.000 39 0% 53 37.7% 30 13.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,superfamily_SSF55550 TIMM44 10469 genome.wustl.edu 37 19 8002915 8002915 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006351.3 -1 validated p.K103 1.000 205 0% 349 41.3% 6 0% - - - NULL MYO1F 4542 genome.wustl.edu 37 19 8612994 8612994 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012335.3 -1 validated p.E399K 1.000 46 0% 95 49.5% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MUC16 94025 genome.wustl.edu 37 19 8976370 8976370 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024690.2 -1 validated p.V14153A 0.000 28 0% 34 47.1% 2 0% benign(0.06) tolerated(0.06) neutral(0.327) HMMPfam_SEA,superfamily_SEA domain MUC16 94025 genome.wustl.edu 37 19 9002590 9002590 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024690.2 -1 validated p.E13409G 0.022 47 0% 88 35.2% 0 - probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_SEA,superfamily_SEA domain MUC16 94025 genome.wustl.edu 37 19 9057358 9057358 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024690.2 -1 validated p.T10030A 0.001 66 0% 58 37.9% 0 - unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9062561 9062561 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024690.2 -1 validated p.P8295 0.000 60 0% 66 54.5% 0 - - - - NULL MUC16 94025 genome.wustl.edu 37 19 9072317 9072317 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024690.2 -1 validated p.F5043 0.001 86 0% 141 40.4% 0 - - - - NULL ZNF559 84527 genome.wustl.edu 37 19 9452636 9452636 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032497.1 +1 provisional p.N170T 0.001 93 0% 79 48.1% 1 100% unknown(0) tolerated(0.8) - superfamily_SSF57667 ZNF266 10781 genome.wustl.edu 37 19 9528583 9528583 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006631.2 -1 validated p.G12 0.001 46 0% 95 42.1% 11 72.7% - - - HMMSmart_KRAB ZNF560 147741 genome.wustl.edu 37 19 9578810 9578810 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152476.2 -1 validated p.G271 0.002 148 0% 90 52.2% 0 - - - - NULL ZNF121 7675 genome.wustl.edu 37 19 9677668 9677668 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001008727.2 -1 validated p.C41R 0.000 141 0% 99 37.4% 3 66.6% benign(0.275) deleterious(0) deleterious(0.474) NULL ZNF562 54811 genome.wustl.edu 37 19 9763921 9763921 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130031.1 -1 validated p.T329A 0.000 312 0% 177 40.7% 7 28.5% benign(0.425) tolerated(0.23) neutral(0.180) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers DNMT1 1786 genome.wustl.edu 37 19 10266538 10266538 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001130823.1 -1 reviewed p.F495L 1.000 35 0% 55 38.2% 10 30% benign(0.135) tolerated(0.13) neutral(0.264) NULL ZNF433 163059 genome.wustl.edu 37 19 12125804 12125804 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080411.1 -1 provisional p.A626 0.379 96 0% 90 41.1% 24 41.6% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF20 7568 genome.wustl.edu 37 19 12246716 12246716 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021143.2 -1 validated p.F3I 0.457 109 0% 145 39.3% 0 - possibly_damaging(0.701) deleterious(0) deleterious(0.697) superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF442 79973 genome.wustl.edu 37 19 12461860 12461860 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030824.2 -1 validated p.R180H 0.005 265 0% 257 38.5% 0 - probably_damaging(0.973) deleterious(0.02) deleterious(0.798) superfamily_SSF57667 TNPO2 30000 genome.wustl.edu 37 19 12812983 12812983 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136196.1 -1 validated p.T772A 1.000 10 0% 19 68.4% 10 80% benign(0.001) tolerated(0.16) neutral(0.059) superfamily_ARM repeat HOOK2 29911 genome.wustl.edu 37 19 12881974 12881974 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013312.2 -1 validated p.R254 1.000 7 0.000 60 0.433 72 40.2% - - - HMMPfam_HOOK CACNA1A 773 genome.wustl.edu 37 19 13563748 13563748 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001127222.1 -1 reviewed p.K161E 1.000 62 0% 67 43.3% 0 - probably_damaging(0.98) deleterious(0.02) deleterious(0.807) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ZSWIM4 65249 genome.wustl.edu 37 19 13934299 13934299 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_023072.2 +1 validated p.L617M 1.000 11 0% 85 34.1% 4 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL MIR24-2 407013 genome.wustl.edu 37 19 13947110 13947110 + RNA SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000386972 -1 known NULL 1.000 13 0% 57 43.9% 0 - - - - - PALM3 342979 genome.wustl.edu 37 19 14164598 14164598 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145028.1 -1 validated p.A614D 0.886 11 0% 79 35.4% 22 40.9% probably_damaging(0.96) deleterious(0.02) deleterious(0.786) NULL CD97 976 genome.wustl.edu 37 19 14516653 14516653 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_078481.2 +1 reviewed p.I575F 1.000 12 0% 89 39.3% 20 40% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like PKN1 5585 genome.wustl.edu 37 19 14554393 14554393 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_213560.1 +1 reviewed p.A151V 1.000 11 0% 79 16.5% 15 6.6% possibly_damaging(0.498) tolerated(0.23) neutral(0.208) HMMPfam_HR1,HMMSmart_SM00742,superfamily_HR1 repeat ZNF333 84449 genome.wustl.edu 37 19 14829699 14829699 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032433.2 +1 validated p.H520 0.004 27 0% 27 33.3% 4 75% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 BRD4 23476 genome.wustl.edu 37 19 15366919 15366919 + Silent SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_058243.2 -1 reviewed p.P569 0.953 926 0% 635 43% 14 28.5% - - - NULL WIZ 58525 genome.wustl.edu 37 19 15534000 15534000 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021241.2 -1 validated p.W758R 1.000 6 0.000 73 0.384 33 36.3% unknown(0) deleterious(0) - HMMSmart_ZnF_C2H2 C19orf44 84167 genome.wustl.edu 37 19 16613940 16613940 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032207.2 +1 validated p.Q275R 0.000 37 0% 98 36.7% 1 0% benign(0.002) tolerated(0.87) neutral(0.001) NULL NWD1 284434 genome.wustl.edu 37 19 16923565 16923565 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001007525.2 +1 validated p.C1298R 0.976 118 0% 177 38.4% 0 - possibly_damaging(0.686) tolerated(0.06) deleterious(0.568) HMMSmart_SM00320,superfamily_WD40 repeat-like IL12RB1 3594 genome.wustl.edu 37 19 18170864 18170864 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005535.1 -1 reviewed p.Q608R 0.666 15 0% 52 44.2% 1 0% benign(0.29) tolerated(0.08) neutral(0.389) NULL TMEM161A 54929 genome.wustl.edu 37 19 19243314 19243314 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017814.1 -1 provisional p.L97P 1.000 37 0% 92 21.7% 24 33.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Tmemb_161AB GATAD2A 54815 genome.wustl.edu 37 19 19576355 19576355 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017660.3 +1 provisional p.T67 0.000 38 0% 50 38% 9 33.3% - - - NULL ZNF43 7594 genome.wustl.edu 37 19 21990923 21990923 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003423.2 -1 validated p.K639R 0.004 97 0% 58 37.9% 2 50% benign(0.023) tolerated(0.59) neutral(0.005) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF43 7594 genome.wustl.edu 37 19 21991385 21991385 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003423.2 -1 validated p.E485G 0.039 141 0% 115 47% 5 80% probably_damaging(0.996) tolerated(0.15) deleterious(0.703) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF43 7594 genome.wustl.edu 37 19 21991646 21991646 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003423.2 -1 validated p.Y398C 0.052 81 0% 66 37.9% 2 50% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF681 148213 genome.wustl.edu 37 19 23926864 23926864 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138286.2 -1 validated p.H496 0.402 79 0% 63 36.5% 1 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ENSG00000104777 0 genome.wustl.edu 37 19 24102429 24102429 + RNA SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000300996 -1 known NULL 0.012 12 0% 15 53.3% 0 - - - - - PLEKHF1 79156 genome.wustl.edu 37 19 30165158 30165158 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024310.4 +1 validated p.G138C 0.999 10 0% 22 45.5% 32 43.7% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_FYVE_PHD_ZnF DPY19L3 147991 genome.wustl.edu 37 19 32954881 32954881 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207325.2 +1 validated p.K518E 0.999 119 0% 121 43% 0 - benign(0.001) tolerated(0.7) neutral(0.002) HMMPfam_DUF2211 DPY19L3 147991 genome.wustl.edu 37 19 32971458 32971458 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207325.2 +1 validated p.G662C 1.000 26 0% 31 29% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF2211 CD22 933 genome.wustl.edu 37 19 35829216 35829216 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001771.3 +1 validated p.T377 0.000 78 0% 137 49.6% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin ENSG00000247203 0 genome.wustl.edu 37 19 36242986 36242986 + RNA SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000501632 -1 novel NULL 0.000 6 0.000 21 0.524 0 - - - - - WDR62 284403 genome.wustl.edu 37 19 36595509 36595509 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001083961.1 +1 validated p.S1415G 0.012 16 0% 52 44.2% 4 50% benign(0) tolerated(0.33) neutral(0.024) NULL ZNF566 84924 genome.wustl.edu 37 19 36939953 36939953 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145343.1 -1 validated p.Y396D 0.997 201 0.5% 99 44.4% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF57667 ZNF566 84924 genome.wustl.edu 37 19 36940277 36940277 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145343.1 -1 validated p.E288* 0.691 122 0% 116 42.2% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF529 57711 genome.wustl.edu 37 19 37047085 37047085 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145649.1 -1 validated p.H10R 0.000 85 0% 126 48.4% 0 - benign(0) - - NULL ZNF790 388536 genome.wustl.edu 37 19 37309641 37309641 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_206894.2 -1 validated p.V535 0.016 138 0% 66 54.5% 0 - - - - HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF540 163255 genome.wustl.edu 37 19 38102503 38102503 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152606.3 +1 validated p.S108G 0.000 161 0% 77 32.5% 1 0% possibly_damaging(0.484) tolerated(0.46) neutral(0.173) NULL ZFP30 22835 genome.wustl.edu 37 19 38126904 38126904 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014898.2 -1 validated p.H180N 1.000 144 0% 151 41.1% 1 0% probably_damaging(0.998) tolerated(0.06) deleterious(0.797) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 HNRNPL 3191 genome.wustl.edu 37 19 39334491 39334491 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001533.2 -1 reviewed p.S291C 1.000 89 0% 206 44.2% 22 68.1% possibly_damaging(0.757) deleterious(0.05) deleterious(0.625) superfamily_SSF54928 MEGF8 1954 genome.wustl.edu 37 19 42838169 42838169 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001410.2 +1 validated p.H121R 1.000 15 0% 58 34.5% 0 - probably_damaging(0.995) tolerated(0.4) deleterious(0.474) HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB MEGF8 1954 genome.wustl.edu 37 19 42880166 42880166 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001410.2 +1 validated p.R2526W 1.000 5 0.000 17 0.412 6 83.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL PSG7 5676 genome.wustl.edu 37 19 43439787 43439787 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002783.2 -1 reviewed p.W67G 0.153 225 0.4% 184 40.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin PHLDB3 653583 genome.wustl.edu 37 19 43999727 43999727 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198850.3 -1 validated p.K291E 0.543 7 0.000 77 0.390 3 33.3% benign(0.054) tolerated(0.56) neutral(0.010) NULL ZNF221 7638 genome.wustl.edu 37 19 44471017 44471017 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013359.2 +1 validated p.C455R 0.991 76 0% 75 46.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF226 7769 genome.wustl.edu 37 19 44680256 44680256 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001032372.1 +1 validated p.T281A 0.000 61 0% 74 54.1% 0 - benign(0.217) tolerated(0.73) neutral(0.023) HMMSmart_ZnF_C2H2,superfamily_SSF57667 APOC1 341 genome.wustl.edu 37 19 45422459 45422459 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001645.3 +1 reviewed p.V75A 0.001 17 0% 62 46.8% 602 0.1% possibly_damaging(0.636) deleterious(0.02) deleterious(0.606) HMMPfam_ApoC-I CCDC61 729440 genome.wustl.edu 37 19 46519609 46519609 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001080402.1 +1 provisional p.F369C 1.000 14 0% 84 42.9% 9 55.5% probably_damaging(0.989) tolerated(0.05) deleterious(0.785) NULL IGFL2 147920 genome.wustl.edu 37 19 46663993 46663993 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001002915.2 +1 validated p.C77R 0.725 56 0% 46 32.6% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL DHX34 9704 genome.wustl.edu 37 19 47885321 47885321 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014681.5 +1 reviewed p.F1128S 1.000 12 0% 35 51.4% 69 63.7% possibly_damaging(0.777) deleterious(0) deleterious(0.734) NULL GLTSCR1 29998 genome.wustl.edu 37 19 48198682 48198682 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015711.3 +1 provisional p.N1046S 0.893 7 0.000 36 0.361 2 50% benign(0) tolerated(0.86) neutral(0.001) NULL CYTH2 9266 genome.wustl.edu 37 19 48982421 48982421 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017457.4 +1 reviewed p.A386V 0.986 25 0% 136 45.6% 153 45.7% benign(0.001) tolerated(0.26) neutral(0.034) NULL BCAT2 587 genome.wustl.edu 37 19 49303308 49303308 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001190.3 -1 reviewed p.V154G 0.991 5 0.000 39 0.385 17 41.1% probably_damaging(0.977) deleterious(0) deleterious(0.863) HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes TEAD2 8463 genome.wustl.edu 37 19 49863331 49863331 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003598.1 -1 provisional p.M1T 1.000 10 0% 57 35.1% 3 66.6% benign(0.125) deleterious(0) neutral(0.455) NULL ALDH16A1 126133 genome.wustl.edu 37 19 49965160 49965160 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153329.3 +1 reviewed p.R260Q 0.999 5 0.000 27 0.370 20 50% benign(0.011) tolerated(0.16) neutral(0.060) HMMPfam_Aldedh,superfamily_ALDH-like RCN3 57333 genome.wustl.edu 37 19 50040374 50040374 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020650.2 +1 provisional p.Q177R 1.000 16 0% 67 44.8% 49 38.7% benign(0.008) tolerated(0.6) neutral(0.004) superfamily_SSF47473 AP2A1 160 genome.wustl.edu 37 19 50308953 50308953 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014203.2 +1 reviewed p.L857P 1.000 8 0.000 77 0.416 94 42.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Clathrin adaptor appendage domain NUP62 23636 genome.wustl.edu 37 19 50411807 50411807 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012346.3 -1 reviewed p.T420S 0.999 41 0% 146 37.7% 16 37.5% benign(0.001) tolerated(0.07) neutral(0.319) HMMPfam_Nsp1_C SIGLEC11 114132 genome.wustl.edu 37 19 50461972 50461972 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052884.2 -1 validated p.E431* 0.004 10 0% 51 31.4% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin ZNF473 25888 genome.wustl.edu 37 19 50549875 50549875 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001006656.1 +1 validated p.S725 0.355 44 0% 85 51.8% 5 40% - - - superfamily_C2H2 and C2HC zinc fingers NAPSA 9476 genome.wustl.edu 37 19 50862879 50862879 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004851.1 -1 reviewed p.L273I 0.996 16 0% 65 46.2% 18 38.8% probably_damaging(0.99) tolerated(0.1) deleterious(0.728) HMMPfam_Asp,superfamily_Pept_Aspartic ACPT 93650 genome.wustl.edu 37 19 51298101 51298101 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033068.2 +1 reviewed p.S349G 0.217 12 0% 67 56.7% 0 - possibly_damaging(0.776) tolerated(0.23) neutral(0.331) superfamily_Phosphoglycerate mutase-like ZNF175 7728 genome.wustl.edu 37 19 52076601 52076601 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007147.2 +1 validated p.L7 0.000 42 0% 61 49.2% 0 - - - - NULL ZNF175 7728 genome.wustl.edu 37 19 52085121 52085121 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007147.2 +1 validated p.H94R 0.000 60 0% 103 51.5% 1 0% possibly_damaging(0.895) tolerated(0.77) neutral(0.354) NULL ZNF614 80110 genome.wustl.edu 37 19 52521708 52521708 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_025040.3 -1 validated p.W19R 0.368 44 0% 156 41% 0 - probably_damaging(0.962) tolerated(0.85) neutral(0.406) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box PPP2R1A 5518 genome.wustl.edu 37 19 52719327 52719327 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014225.5 +1 reviewed p.K331 1.000 23 0% 59 50.8% 86 38.3% - - - HMMPfam_HEAT,superfamily_ARM repeat ZNF610 162963 genome.wustl.edu 37 19 52869027 52869027 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173530.2 +1 validated p.H132 0.892 104 0% 118 42.4% 0 - - - - NULL ENSG00000245932 0 genome.wustl.edu 37 19 53302677 53302677 + RNA SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000500436 +1 known NULL 0.008 94 0% 75 44% 1 0% - - - - ZNF415 55786 genome.wustl.edu 37 19 53612905 53612905 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018355.2 -1 validated p.G131 0.001 150 0% 188 45.7% 21 52.3% - - - NULL ZNF813 126017 genome.wustl.edu 37 19 53993756 53993756 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004301.3 +1 validated p.I90 0.003 127 0% 79 44.3% 0 - - - - NULL PRPF31 26121 genome.wustl.edu 37 19 54631461 54631461 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015629.3 +1 reviewed p.L320P 0.984 6 0.000 50 0.260 98 47.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Nop,superfamily_Nop domain MBOAT7 79143 genome.wustl.edu 37 19 54682537 54682537 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024298.3 -1 reviewed p.W326R 1.000 13 0% 67 44.8% 48 43.7% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_MBOAT RPS9 6203 genome.wustl.edu 37 19 54710426 54710426 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000402367 +1 known p.R138Q 0.826 8 0.000 19 0.263 68 20.5% probably_damaging(1) tolerated(0.15) deleterious(0.741) NULL TTYH1 57348 genome.wustl.edu 37 19 54947307 54947307 + Nonstop_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020659.2 +1 reviewed p.*451G 1.000 18 0% 92 33.7% 2 50% - - - NULL LILRB4 11006 genome.wustl.edu 37 19 55177761 55177761 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006847.3 +1 reviewed p.Q315H 0.000 58 0% 195 39.5% 7 0% probably_damaging(0.965) deleterious(0.01) deleterious(0.812) NULL NCR1 9437 genome.wustl.edu 37 19 55420719 55420719 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004829.5 +1 validated p.K157N 1.000 18 0% 80 41.2% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00409,superfamily_Immunoglobulin NLRP2 55655 genome.wustl.edu 37 19 55494667 55494667 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017852.3 +1 validated p.D534G 0.000 29 0% 127 43.3% 2 100% benign(0.01) deleterious(0.04) neutral(0.349) NULL EPS8L1 54869 genome.wustl.edu 37 19 55593184 55593184 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133180.2 +1 reviewed p.S273* 0.000 7 0.000 35 0.429 14 28.5% - - - NULL TMEM150B 284417 genome.wustl.edu 37 19 55828329 55828329 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001085488.1 -1 provisional p.K110N 0.355 23 0% 67 37.3% 1 0% possibly_damaging(0.512) tolerated(0.19) neutral(0.221) HMMPfam_Frag1 SSC5D 284297 genome.wustl.edu 37 19 56030260 56030260 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001144950.1 +1 provisional p.G1539 0.835 8 0.000 25 0.600 22 4.5% - - - NULL NLRP9 338321 genome.wustl.edu 37 19 56243471 56243471 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_176820.2 -1 reviewed p.E576* 0.000 107 0% 66 28.8% 0 - - - - superfamily_RNI-like NLRP9 338321 genome.wustl.edu 37 19 56244078 56244078 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_176820.2 -1 reviewed p.T373 0.000 73 0% 138 39.9% 0 - - - - NULL NLRP13 126204 genome.wustl.edu 37 19 56424200 56424200 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_176810.2 -1 validated p.D328G 0.001 72 0% 57 56.1% 0 - possibly_damaging(0.659) deleterious(0.01) deleterious(0.638) HMMPfam_NACHT ZNF667 63934 genome.wustl.edu 37 19 56953299 56953299 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022103.3 -1 validated p.E355 0.897 172 0% 108 40.7% 0 - - - - superfamily_C2H2 and C2HC zinc fingers ZNF772 400720 genome.wustl.edu 37 19 57985360 57985360 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001024596.2 -1 validated p.S251I 0.001 43 0% 105 41.9% 0 - probably_damaging(0.969) tolerated(0.16) deleterious(0.471) superfamily_C2H2 and C2HC zinc fingers ZNF772 400720 genome.wustl.edu 37 19 57986509 57986509 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001024596.2 -1 validated p.T69P 0.004 55 0% 136 52.9% 0 - benign(0.066) tolerated(0.38) neutral(0.022) HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF530 348327 genome.wustl.edu 37 19 58117636 58117636 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020880.3 +1 validated p.F248S 0.014 81 0% 142 43% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 LOC100130710 100130710 genome.wustl.edu 37 19 58152367 58152367 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_001718544.2 -1 model p.R409* 0.000 37 2.7% 57 54.4% 5 40% - - - NULL ZNF587 84914 genome.wustl.edu 37 19 58370248 58370248 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000339656 +1 known p.S156 0.037 165 0% 157 15.9% 0 - - - - NULL ZNF418 147686 genome.wustl.edu 37 19 58438791 58438791 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_133460.1 -1 provisional p.T253I 0.037 184 0% 201 40.8% 0 - possibly_damaging(0.812) deleterious(0.03) deleterious(0.670) superfamily_SSF57667 ZSCAN18 65982 genome.wustl.edu 37 19 58596111 58596111 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145542.1 -1 validated p.G548S 0.000 3 0.000 27 0.444 42 59.5% unknown(0) deleterious(0) - NULL SIRPB1 10326 genome.wustl.edu 37 20 1551759 1551759 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006065.3 -1 reviewed p.Q259R 0.000 54 0% 68 39.7% 0 - benign(0.068) deleterious(0.02) neutral(0.388) HMMSmart_SM00409,superfamily_Immunoglobulin VPS16 64601 genome.wustl.edu 37 20 2844727 2844727 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022575.2 +1 reviewed p.K537Q 1.000 14 0% 84 44% 29 37.9% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Vps16_C C20orf194 25943 genome.wustl.edu 37 20 3233249 3233249 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001009984.1 -1 validated p.E1168G 1.000 126 0% 289 44.3% 3 100% benign(0.35) deleterious(0.05) neutral(0.456) NULL PLCB4 5332 genome.wustl.edu 37 20 9319656 9319656 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000933.3 +1 reviewed p.M114T 1.000 112 0% 75 57.3% 2 100% benign(0.061) deleterious(0.01) neutral(0.410) superfamily_SSF50729 BTBD3 22903 genome.wustl.edu 37 20 11903729 11903729 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014962.2 +1 validated p.D328 1.000 62 0% 52 50% 6 33.3% - - - NULL RALGAPA2 57186 genome.wustl.edu 37 20 20493803 20493803 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020343.2 -1 validated p.E1404K 1.000 38 0% 38 55.3% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL XRN2 22803 genome.wustl.edu 37 20 21306948 21306948 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012255.3 +1 reviewed p.V36A 1.000 163 0% 99 34.3% 3 66.6% benign(0.023) tolerated(0.06) neutral(0.324) HMMPfam_XRN_N GGTLC1 92086 genome.wustl.edu 37 20 23966425 23966425 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000412175 -1 known p.M130T 0.470 44 0% 136 45.6% 0 - - - - NULL PLAGL2 5326 genome.wustl.edu 37 20 30784628 30784628 + Nonsense_Mutation SNP G G C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002657.3 -1 reviewed p.S373* 0.982 22 0% 71 33.8% 1 0% - - - NULL PLAGL2 5326 genome.wustl.edu 37 20 30785421 30785421 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002657.3 -1 reviewed p.R109C 1.000 25 0% 147 44.9% 2 50% possibly_damaging(0.806) deleterious(0) deleterious(0.748) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers KIF3B 9371 genome.wustl.edu 37 20 30898899 30898899 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004798.2 +1 reviewed p.M440T 1.000 80 0% 133 40.6% 6 50% benign(0) tolerated(0.54) neutral(0.007) NULL DNMT3B 1789 genome.wustl.edu 37 20 31376690 31376690 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006892.3 +1 reviewed p.V229M 1.000 52 0% 114 55.3% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT E2F1 1869 genome.wustl.edu 37 20 32265335 32265335 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005225.2 -1 reviewed p.V246A 1.000 27 0% 114 41.2% 3 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL E2F1 1869 genome.wustl.edu 37 20 32266144 32266144 + Silent SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005225.2 -1 reviewed p.T196 0.000 6 0.000 33 0.364 4 25% - - - NULL EIF2S2 8894 genome.wustl.edu 37 20 32684509 32684509 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003908.3 -1 reviewed p.G213R 1.000 173 0% 166 49.4% 22 31.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_eIF-5_eIF-2B,HMMSmart_SM00653,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain MAP1LC3A 84557 genome.wustl.edu 37 20 33147212 33147212 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181509.1 +1 reviewed p.L57S 1.000 9 0.000 86 0.477 174 45.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MAP1_LC3,superfamily_SSF54236 MYH7B 57644 genome.wustl.edu 37 20 33587422 33587422 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020884.3 +1 reviewed p.I1572T 1.000 12 0% 90 31.1% 6 16.6% probably_damaging(0.998) tolerated(0.17) deleterious(0.533) HMMPfam_Myosin_tail_1 TRPC4AP 26133 genome.wustl.edu 37 20 33603862 33603862 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015638.2 -1 validated p.S433 0.944 77 0% 87 46% 11 36.3% - - - NULL FAM83C 128876 genome.wustl.edu 37 20 33876658 33876658 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178468.4 -1 validated p.Q206R 1.000 9 0.000 34 0.500 0 - possibly_damaging(0.948) deleterious(0.03) deleterious(0.756) HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease CEP250 11190 genome.wustl.edu 37 20 34065928 34065928 + Splice_Site SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007186.3 +1 reviewed e14+2 1.000 17 0% 37 27% 2 100% - - - - PHF20 51230 genome.wustl.edu 37 20 34501268 34501268 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016436.4 +1 validated p.P553 1.000 103 0% 44 47.7% 4 50% - - - NULL SOGA1 140710 genome.wustl.edu 37 20 35415025 35415025 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000237536 -1 known p.C1617R 1.000 34 0% 86 41.9% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) NULL LBP 3929 genome.wustl.edu 37 20 36993326 36993326 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004139.2 +1 reviewed p.I281V 0.083 78 1.3% 158 39.2% 0 - benign(0) tolerated(0.43) neutral(0.013) HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI CHD6 84181 genome.wustl.edu 37 20 40033517 40033517 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032221.3 -1 reviewed p.I2622V 1.000 41 0% 79 39.2% 15 46.6% possibly_damaging(0.54) deleterious(0.01) deleterious(0.589) NULL SEMG2 6407 genome.wustl.edu 37 20 43851772 43851772 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003008.2 +1 reviewed p.K500R 0.000 81 0% 91 34.1% 0 - possibly_damaging(0.556) deleterious(0.04) deleterious(0.538) HMMPfam_Semenogelin DBNDD2 55861 genome.wustl.edu 37 20 44037173 44037173 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001048221.1 +1 validated p.F22L 1.000 25 0% 95 48.4% 15 60% possibly_damaging(0.636) deleterious(0.01) deleterious(0.628) HMMPfam_Dysbindin PIGT 51604 genome.wustl.edu 37 20 44054333 44054333 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015937.4 +1 reviewed p.V535A 1.000 10 0% 48 52.1% 231 55.8% probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_Gpi16 ACOT8 10005 genome.wustl.edu 37 20 44483905 44483905 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005469.2 -1 reviewed p.K52R 0.989 18 0% 53 39.6% 17 29.4% benign(0.001) tolerated(0.5) neutral(0.010) HMMPfam_Acyl_CoA_thio,superfamily_SSF54637 ZNF840 100130863 genome.wustl.edu 37 20 45093543 45093543 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_001722110.1 +1 model p.E146G 0.999 58 0% 47 27.7% 0 - - - - NULL SLC2A10 81031 genome.wustl.edu 37 20 45355558 45355558 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030777.3 +1 reviewed p.F448 0.706 41 0% 128 40.6% 3 66.6% - - - HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter NCOA3 8202 genome.wustl.edu 37 20 46264746 46264746 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_181659.2 +1 reviewed p.S539F 1.000 61 0% 70 32.9% 0 - probably_damaging(1) tolerated(0.4) deleterious(0.516) NULL DDX27 55661 genome.wustl.edu 37 20 47855494 47855494 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017895.7 +1 reviewed p.L597F 1.000 52 0% 52 51.9% 39 43.5% possibly_damaging(0.57) deleterious(0.03) deleterious(0.559) superfamily_P-loop containing nucleoside triphosphate hydrolases ADNP 23394 genome.wustl.edu 37 20 49510399 49510399 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015339.2 -1 reviewed p.P284 0.078 88 0% 100 36% 5 60% - - - NULL SALL4 57167 genome.wustl.edu 37 20 50400990 50400990 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020436.3 -1 reviewed p.S992 0.951 41 2.4% 68 47.1% 1 0% - - - NULL TSHZ2 128553 genome.wustl.edu 37 20 51870939 51870939 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173485.4 +1 validated p.S314 0.463 36 0% 42 45.2% 1 0% - - - NULL ANKRD60 140731 genome.wustl.edu 37 20 56793690 56793690 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d XM_001134442.3 -1 model p.L300P 0.000 37 0% 136 48.5% 0 - benign(0.015) tolerated(0.27) neutral(0.034) NULL RAB22A 57403 genome.wustl.edu 37 20 56934728 56934728 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020673.2 +1 reviewed p.Q185P 1.000 23 0% 36 55.6% 13 38.4% benign(0) tolerated(0.26) neutral(0.034) HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF831 128611 genome.wustl.edu 37 20 57768401 57768401 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_178457.1 +1 provisional p.P776H 0.000 14 0% 71 35.2% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL TCFL5 10732 genome.wustl.edu 37 20 61477420 61477420 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000217162 -1 known p.K429T 0.007 12 0% 35 25.7% 0 - unknown(0) - - NULL DIDO1 11083 genome.wustl.edu 37 20 61512815 61512815 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033081.1 -1 reviewed p.E1498G 0.825 23 0% 111 43.2% 2 50% possibly_damaging(0.668) deleterious(0) deleterious(0.681) NULL DIDO1 11083 genome.wustl.edu 37 20 61542940 61542940 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033081.1 -1 reviewed p.N9D 0.000 31 0% 135 39.3% 6 33.3% benign(0.418) tolerated(0.59) neutral(0.140) NULL ARFGAP1 55738 genome.wustl.edu 37 20 61907867 61907867 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_175609.1 +1 reviewed p.D69G 1.000 44 0% 146 45.2% 5 40% possibly_damaging(0.822) deleterious(0.04) deleterious(0.660) HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain TPD52L2 7165 genome.wustl.edu 37 20 62514110 62514110 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_199360.1 +1 validated p.Q138R 1.000 20 0% 94 34% 3 100% possibly_damaging(0.932) deleterious(0) deleterious(0.823) HMMPfam_TPD52 MYT1 4661 genome.wustl.edu 37 20 62839312 62839312 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004535.2 +1 reviewed p.L255M 0.001 9 0.000 50 0.480 0 - benign(0.001) tolerated(0.26) neutral(0.034) NULL HSPA13 6782 genome.wustl.edu 37 21 15746314 15746314 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006948.4 -1 reviewed p.R347H 0.002 113 0% 102 42.2% 2 0% benign(0.002) tolerated(0.1) neutral(0.286) superfamily_Actin-like ATPase domain USP25 29761 genome.wustl.edu 37 21 17202887 17202887 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013396.3 +1 validated p.I577M 0.999 144 0% 72 40.3% 3 0% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_UCH,superfamily_Cysteine proteinases MIR99A 407055 genome.wustl.edu 37 21 17911409 17911409 + RNA SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000384906 +1 known NULL 1.000 55 0% 53 43.4% 0 - - - - - CYYR1 116159 genome.wustl.edu 37 21 27840903 27840903 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052954.2 -1 validated p.L128M 0.984 29 3.4% 34 44.1% 1 0% probably_damaging(0.996) tolerated(0.08) deleterious(0.762) NULL ADAMTS5 11096 genome.wustl.edu 37 21 28302251 28302251 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007038.3 -1 reviewed p.D727Y 1.000 69 0% 62 50% 0 - possibly_damaging(0.826) deleterious(0) deleterious(0.758) NULL N6AMT1 29104 genome.wustl.edu 37 21 30252190 30252190 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_013240.3 -1 reviewed e4+2 1.000 46 0% 56 37.5% 0 - - - - - KRTAP26-1 388818 genome.wustl.edu 37 21 31691804 31691804 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_203405.1 -1 validated p.R184 1.000 36 0% 33 15.2% 0 - - - - HMMPfam_PMG SCAF4 57466 genome.wustl.edu 37 21 33065608 33065608 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020706.2 -1 reviewed p.S504 1.000 190 0% 209 45% 4 50% - - - superfamily_RNA-binding domain RBD URB1 9875 genome.wustl.edu 37 21 33721781 33721781 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014825.2 -1 validated p.S948 0.000 6 0.000 15 0.333 2 50% - - - NULL SYNJ1 8867 genome.wustl.edu 37 21 34038264 34038264 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003895.3 -1 validated p.S712G 0.998 38 0% 46 37% 0 - benign(0.001) deleterious(0.03) neutral(0.364) HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like IFNAR2 3455 genome.wustl.edu 37 21 34635805 34635805 + Nonstop_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_207585.1 +1 reviewed p.*516W 0.149 15 0% 27 51.9% 2 100% - - - NULL IFNAR1 3454 genome.wustl.edu 37 21 34707931 34707931 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000629.2 +1 reviewed p.T60A 0.812 136 0% 142 35.9% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_Fibronectin type III GART 2618 genome.wustl.edu 37 21 34876533 34876533 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000819.4 -1 reviewed p.K977N 0.211 92 0% 105 41.9% 49 42.8% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Formyl_trans_N,superfamily_Formyltransferase ITSN1 6453 genome.wustl.edu 37 21 35134258 35134258 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003024.2 +1 reviewed p.S252 1.000 124 0% 111 40.5% 2 50% - - - HMMSmart_SM00027,superfamily_EF-hand SLC5A3 6526 genome.wustl.edu 37 21 35469425 35469425 + Frame_Shift_Del DEL A A - novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006933.4 +1 validated p.E643fs 0.037 - - - - - - - - - NULL DOPEY2 9980 genome.wustl.edu 37 21 37661062 37661062 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005128.2 +1 validated p.T2102 1.000 103 0% 120 25% 5 40% - - - NULL DOPEY2 9980 genome.wustl.edu 37 21 37665838 37665838 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005128.2 +1 validated p.E2289G 0.966 69 0% 112 39.3% 18 66.6% benign(0.224) deleterious(0) neutral(0.467) NULL HLCS 3141 genome.wustl.edu 37 21 38309383 38309383 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000411.5 -1 reviewed p.K121R 0.019 46 0% 76 53.9% 3 66.6% benign(0.004) tolerated(1) - NULL DSCR3 10311 genome.wustl.edu 37 21 38600669 38600669 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006052.1 -1 reviewed p.L171R 0.002 25 0% 93 34.4% 7 42.8% - - - NULL KCNJ15 3772 genome.wustl.edu 37 21 39671936 39671936 + Silent SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002243.3 +1 reviewed p.P251 1.000 39 0% 59 32.2% 0 - - - - HMMPfam_IRK,superfamily_Ig_E-set BRWD1 54014 genome.wustl.edu 37 21 40559055 40559055 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018963.3 -1 reviewed p.D2287A 1.000 119 0% 233 39.9% 7 42.8% possibly_damaging(0.842) deleterious(0) deleterious(0.766) superfamily_WD40 repeat-like BRWD1 54014 genome.wustl.edu 37 21 40568743 40568743 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_018963.3 -1 reviewed p.N2084 0.023 154 0% 141 48.2% 3 0% - - - superfamily_WD40 repeat-like B3GALT5 10317 genome.wustl.edu 37 21 41032927 41032927 + Silent SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006057.1 +1 reviewed p.P147 0.037 53 0% 75 44% 0 - - - - HMMPfam_Galactosyl_T DSCAM 1826 genome.wustl.edu 37 21 41710149 41710149 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001389.3 -1 validated p.E554D 1.000 97 0% 92 37% 0 - possibly_damaging(0.809) tolerated(0.41) neutral(0.320) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin DSCAM 1826 genome.wustl.edu 37 21 41741079 41741079 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001389.3 -1 validated p.H201R 1.000 70 0% 68 36.8% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMSmart_SM00409,superfamily_Immunoglobulin BACE2 25825 genome.wustl.edu 37 21 42609656 42609656 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012105.3 +1 reviewed p.K206 1.000 128 0% 131 43.5% 42 69% - - - HMMPfam_Asp,superfamily_Acid proteases FAM3B 54097 genome.wustl.edu 37 21 42694931 42694931 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_058186.3 +1 validated p.D34G 0.115 42 0% 137 41.6% 19 52.6% possibly_damaging(0.818) deleterious(0.05) deleterious(0.654) PatternScan_AMINO_ACID_PERMEASE_1 ICOSLG 23308 genome.wustl.edu 37 21 45655320 45655320 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015259.4 -1 validated p.S178G 0.878 22 0% 119 41.2% 1 100% probably_damaging(0.98) tolerated(0.2) deleterious(0.473) superfamily_Immunoglobulin AIRE 326 genome.wustl.edu 37 21 45708261 45708261 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000383.2 +1 reviewed p.A191V 1.000 20 0% 107 47.7% 0 - probably_damaging(0.995) deleterious(0.02) deleterious(0.841) HMMPfam_SAND,superfamily_SAND domain-like KRTAP10-7 386675 genome.wustl.edu 37 21 46020954 46020954 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000380102 +1 known p.S145G 0.593 55 0% 253 16.6% 0 - unknown(0) tolerated(0.66) - NULL FAM207A 85395 genome.wustl.edu 37 21 46363743 46363743 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_058190.2 +1 predicted p.I92V 0.001 16 0% 63 44.4% 7 28.5% unknown(0) tolerated(0.41) - NULL DIP2A 23181 genome.wustl.edu 37 21 47958511 47958511 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015151.3 +1 reviewed p.N639K 1.000 11 0% 47 44.7% 4 50% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) superfamily_Acetyl-CoA synthetase-like CCT8L2 150160 genome.wustl.edu 37 22 17073333 17073333 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014406.4 -1 validated p.S36R 0.257 10 0% 53 47.2% 0 - possibly_damaging(0.846) deleterious(0) deleterious(0.770) superfamily_GroEL equatorial domain-like CECR5 27440 genome.wustl.edu 37 22 17629391 17629391 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_033070.2 -1 validated p.H130 0.000 58 0% 172 41.3% 7 71.4% - - - superfamily_HAD-like MICAL3 57553 genome.wustl.edu 37 22 18387435 18387435 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015241.2 -1 provisional p.F145L 1.000 46 0% 78 43.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_FAD/NAD(P)-binding domain ARVCF 421 genome.wustl.edu 37 22 19960710 19960710 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001670.1 -1 reviewed p.S790 1.000 8 0.000 14 0.786 44 38.6% - - - HMMSmart_SM00185,superfamily_ARM repeat PI4KA 5297 genome.wustl.edu 37 22 21067598 21067598 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_058004.2 -1 reviewed p.I1790V 1.000 7 0.000 47 0.298 11 36.3% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like) LZTR1 8216 genome.wustl.edu 37 22 21343948 21343948 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006767.3 +1 reviewed p.R210* 1.000 30 0% 63 42.9% 12 83.3% - - - superfamily_Galactose oxidase central domain TPST2 8459 genome.wustl.edu 37 22 26932449 26932449 + Silent SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001008566.1 -1 reviewed p.I282 0.745 14 0% 39 61.5% 13 30.7% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases MN1 4330 genome.wustl.edu 37 22 28196348 28196348 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002430.2 -1 reviewed p.G62S 1.000 11 0% 51 43.1% 0 - probably_damaging(0.996) tolerated(0.48) deleterious(0.472) NULL TTC28 23331 genome.wustl.edu 37 22 28379076 28379076 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145418.1 -1 validated p.P2193 0.000 48 0% 122 46.7% 11 63.6% - - - NULL KREMEN1 83999 genome.wustl.edu 37 22 29533328 29533328 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032045.4 +1 reviewed e6-2 1.000 6 0.000 31 0.613 0 - - - - - HORMAD2 150280 genome.wustl.edu 37 22 30500422 30500422 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152510.2 +1 provisional p.R97I 0.982 284 0% 89 34.8% 0 - possibly_damaging(0.612) deleterious(0.01) deleterious(0.618) HMMPfam_HORMA,superfamily_HORMA_DNA_bd PRR14L 253143 genome.wustl.edu 37 22 32110732 32110732 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173566.2 -1 validated p.K1031N 0.172 46 0% 76 52.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL HMOX1 3162 genome.wustl.edu 37 22 35782875 35782875 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002133.1 +1 reviewed p.Y114 0.004 12 0% 30 53.3% 14 7.1% - - - HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like APOL5 80831 genome.wustl.edu 37 22 36122764 36122764 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_030642.1 +1 reviewed p.G217R 0.000 70 0% 117 43.6% 0 - benign(0.026) tolerated(0.13) neutral(0.254) HMMPfam_ApoL FOXRED2 80020 genome.wustl.edu 37 22 36892246 36892246 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001102371.1 -1 validated p.T464 0.934 21 0% 79 45.6% 0 - - - - NULL ELFN2 114794 genome.wustl.edu 37 22 37769468 37769468 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_052906.3 -1 validated p.Y703H 1.000 11 0% 32 28.1% 0 - probably_damaging(0.993) tolerated(0.05) deleterious(0.795) NULL KCNJ4 3761 genome.wustl.edu 37 22 38822882 38822882 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004981.1 -1 reviewed p.F419S 0.962 8 0.000 50 0.460 0 - benign(0.001) tolerated(0.8) neutral(0.001) NULL DDX17 10521 genome.wustl.edu 37 22 38883998 38883998 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098504.1 -1 reviewed p.P524S 1.000 65 0% 75 46.7% 39 46.1% benign(0.048) tolerated(0.16) neutral(0.062) superfamily_P-loop containing nucleoside triphosphate hydrolases APOBEC3D 140564 genome.wustl.edu 37 22 39421213 39421213 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152426.3 +1 reviewed p.T117A 0.000 27 0% 99 25.3% 0 - benign(0) tolerated(1) - HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like MKL1 57591 genome.wustl.edu 37 22 40815125 40815125 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_020831.3 -1 validated p.S439 0.175 4 0.000 17 0.471 9 66.6% - - - NULL ST13 6767 genome.wustl.edu 37 22 41231837 41231837 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003932.3 -1 reviewed p.R146H 0.965 62 0% 86 46.5% 49 28.5% benign(0.007) tolerated(0.2) neutral(0.049) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like EP300 2033 genome.wustl.edu 37 22 41573965 41573965 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001429.3 +1 reviewed p.F2084V 1.000 28 0% 48 37.5% 19 26.3% unknown(0) tolerated(0.15) - superfamily_Nuc_recept_coact,HMMPfam_Creb_binding XRCC6 2547 genome.wustl.edu 37 22 42059692 42059692 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001469.3 +1 reviewed p.I568T 0.011 20 0% 70 35.7% 914 46.6% benign(0) tolerated(0.1) neutral(0.286) superfamily_SSF68906 RRP7A 27341 genome.wustl.edu 37 22 42908995 42908995 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015703.4 -1 validated p.A255V 0.998 3 0.000 25 0.600 110 52.7% benign(0.16) tolerated(0.52) neutral(0.023) NULL CYB5R3 1727 genome.wustl.edu 37 22 43032786 43032786 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000398.6 -1 reviewed p.S30P 0.996 17 0% 66 42.4% 27 40.7% unknown(0) deleterious(0) - NULL PLXNB2 23654 genome.wustl.edu 37 22 50719533 50719533 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012401.2 -1 validated p.K1250E 1.000 16 0% 79 38% 215 50.6% possibly_damaging(0.942) deleterious(0.01) deleterious(0.792) NULL GYG2 8908 genome.wustl.edu 37 X 2774565 2774565 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003918.2 +1 reviewed p.F203L 0.992 42 0% 72 51.4% 1 0% possibly_damaging(0.938) deleterious(0.05) deleterious(0.729) HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases MXRA5 25878 genome.wustl.edu 37 X 3239867 3239867 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015419.3 -1 reviewed p.E1287* 0.001 261 0% 301 45.2% 0 - - - - NULL HDHD1 8226 genome.wustl.edu 37 X 6968396 6968396 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001135565.1 -1 reviewed p.V233M 0.956 38 0% 74 43.2% 4 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_HAD-like ACE2 59272 genome.wustl.edu 37 X 15580122 15580122 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021804.2 -1 reviewed p.R775I 0.000 455 0.2% 154 40.9% 1 0% benign(0.027) deleterious(0.01) neutral(0.407) NULL CTPS2 56474 genome.wustl.edu 37 X 16657302 16657302 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000455276 -1 known p.E76* 1.000 168 0% 117 51.3% 4 50% benign(0.287) deleterious(0.04) neutral(0.438) superfamily_Class I glutamine amidotransferase-like NHS 4810 genome.wustl.edu 37 X 17737524 17737524 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136024.2 +1 reviewed p.K128Q 1.000 38 2.6% 118 38.1% 1 0% benign(0.226) tolerated(0.38) neutral(0.040) NULL SCML2 10389 genome.wustl.edu 37 X 18276278 18276278 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_006089.2 -1 validated p.P387T 1.000 46 0% 79 41.8% 0 - possibly_damaging(0.864) tolerated(1) neutral(0.335) NULL PHKA2 5256 genome.wustl.edu 37 X 18944664 18944664 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000292.2 -1 reviewed p.R456G 0.220 90 0% 114 41.2% 1 0% benign(0) tolerated(0.34) neutral(0.023) HMMPfam_PHK_AB PHKA2 5256 genome.wustl.edu 37 X 18959761 18959761 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000292.2 -1 reviewed p.S250 0.635 108 0% 103 46.6% 0 - - - - HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases PDHA1 5160 genome.wustl.edu 37 X 19373600 19373600 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000284.3 +1 reviewed p.G246D 1.000 72 0% 107 40.2% 91 90.1% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding) CNKSR2 22866 genome.wustl.edu 37 X 21627452 21627452 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014927.3 +1 reviewed p.E803D 1.000 30 0% 32 25% 0 - benign(0.007) tolerated(0.12) neutral(0.261) NULL APOO 79135 genome.wustl.edu 37 X 23899019 23899019 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024122.4 -1 reviewed p.K20 1.000 65 0% 85 48.2% 12 100% - - - HMMPfam_ApoO ZFX 7543 genome.wustl.edu 37 X 24228842 24228842 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003410.3 +1 reviewed p.S589 1.000 97 0% 99 43.4% 2 50% - - - HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers FAM48B2 170067 genome.wustl.edu 37 X 24329600 24329600 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001136233.1 -1 provisional p.S611 0.000 8 0.000 44 0.477 0 - - - - NULL DMD 1756 genome.wustl.edu 37 X 32408252 32408252 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004006.2 -1 reviewed p.M1427T 1.000 211 0% 126 43.7% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_t-snare proteins DMD 1756 genome.wustl.edu 37 X 32717323 32717323 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004006.2 -1 reviewed p.E246G 1.000 201 0% 100 29% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL CXorf30 645090 genome.wustl.edu 37 X 36321980 36321980 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001098843.3 +1 validated p.I109V 0.003 240 0% 102 41.2% 2 0% benign(0.001) tolerated(0.78) neutral(0.001) NULL BCOR 54880 genome.wustl.edu 37 X 39921453 39921453 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001123385.1 -1 reviewed p.L1456P 0.996 27 0% 103 45.6% 3 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Ankyrin repeat USP27X 389856 genome.wustl.edu 37 X 49645144 49645144 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145073.1 +1 provisional p.R78S 0.999 74 0% 266 39.1% 1 0% - - - HMMPfam_UCH,superfamily_SSF54001 AKAP4 8852 genome.wustl.edu 37 X 49957895 49957895 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003886.2 -1 reviewed p.L490P 0.917 130 0% 126 42.9% 0 - probably_damaging(0.981) tolerated(0.16) deleterious(0.485) HMMPfam_AKAP_110,HMMSmart_SM00807 KDM5C 8242 genome.wustl.edu 37 X 53228293 53228293 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004187.3 -1 reviewed p.D703 0.997 33 0% 164 40.2% 14 42.8% - - - NULL HUWE1 10075 genome.wustl.edu 37 X 53573451 53573451 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031407.4 -1 reviewed p.K3621E 1.000 40 0% 80 40% 4 75% unknown(0) tolerated(0.07) - NULL HUWE1 10075 genome.wustl.edu 37 X 53620411 53620411 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000427052 -1 known p.S252P 0.997 36 0% 57 29.8% 1 0% - - - NULL HUWE1 10075 genome.wustl.edu 37 X 53629526 53629526 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_031407.4 -1 reviewed p.S990 1.000 202 0% 119 37% 0 - - - - NULL PHF8 23133 genome.wustl.edu 37 X 54014211 54014211 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_015107.2 -1 reviewed p.I633V 0.053 178 0% 193 43.5% 1 0% benign(0.005) tolerated(0.29) neutral(0.029) NULL FAM120C 54954 genome.wustl.edu 37 X 54208945 54208945 + Silent SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017848.4 -1 validated p.R229 1.000 4 0.000 20 0.500 1 0% - - - NULL GNL3L 54552 genome.wustl.edu 37 X 54574662 54574662 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019067.5 +1 reviewed p.N211D 1.000 52 0% 103 45.6% 0 - benign(0) tolerated(0.09) neutral(0.296) superfamily_SSF52540 MSN 4478 genome.wustl.edu 37 X 64947704 64947704 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002444.2 +1 reviewed p.V42A 1.000 424 0% 168 48.2% 6 66.6% benign(0.313) tolerated(0.05) neutral(0.443) HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236 HEPH 9843 genome.wustl.edu 37 X 65474949 65474949 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_138737.3 +1 reviewed p.S882F 1.000 111 0% 66 34.8% 1 0% probably_damaging(0.991) tolerated(0.05) deleterious(0.789) superfamily_Cupredoxins EDA2R 60401 genome.wustl.edu 37 X 65835774 65835774 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_021783.2 -1 reviewed e1+2 1.000 87 0% 43 53.5% 0 - - - - - IL2RG 3561 genome.wustl.edu 37 X 70328508 70328508 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000374188 -1 known p.S57Y 0.918 78 0% 143 42% 33 12.1% - - - NULL NONO 4841 genome.wustl.edu 37 X 70510517 70510517 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001145408.1 +1 reviewed p.E10D 1.000 90 0% 84 46.4% 36 0% benign(0) deleterious(0.03) neutral(0.364) NULL ABCB7 22 genome.wustl.edu 37 X 74318805 74318805 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004299.3 -1 reviewed p.I143T 1.000 66 0% 76 34.2% 0 - benign(0) tolerated(0.29) neutral(0.029) HMMPfam_ABC_membrane,superfamily_ABC_TM_1 ZDHHC15 158866 genome.wustl.edu 37 X 74641710 74641710 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144969.2 -1 reviewed p.P284 0.992 332 0% 86 44.2% 0 - - - - NULL ATRX 546 genome.wustl.edu 37 X 76939378 76939378 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000489.3 -1 reviewed p.I457N 0.009 298 0% 199 42.2% 1 0% benign(0.082) tolerated(0.24) neutral(0.043) NULL ZCCHC5 203430 genome.wustl.edu 37 X 77912808 77912808 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152694.2 -1 reviewed p.Q370 0.000 57 0% 80 45% 0 - - - - NULL ITM2A 9452 genome.wustl.edu 37 X 78616950 78616950 + Silent SNP A A G rs144338492 by1000genomes TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_004867.4 -1 reviewed p.Y193 0.470 64 0% 59 39% 3 0% - - - HMMPfam_BRICHOS BRWD3 254065 genome.wustl.edu 37 X 79932848 79932848 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_153252.4 -1 reviewed p.G1557* 1.000 33 0% 18 66.7% 1 0% - - - NULL PCDH11X 27328 genome.wustl.edu 37 X 91723312 91723312 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_032968.3 +1 reviewed p.L1120I 0.999 234 0% 206 44.2% 0 - benign(0.208) tolerated(0.39) neutral(0.036) NULL TNMD 64102 genome.wustl.edu 37 X 99852514 99852514 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_022144.2 +1 reviewed p.T146N 1.000 154 0% 91 42.9% 0 - probably_damaging(0.998) tolerated(0.26) deleterious(0.508) HMMPfam_BRICHOS NOX1 27035 genome.wustl.edu 37 X 100106235 100106235 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_007052.4 -1 reviewed p.V295G 1.000 61 0% 50 26% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like ARMCX1 51309 genome.wustl.edu 37 X 100809047 100809047 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_016608.1 +1 reviewed p.N378K 1.000 116 0% 133 40.6% 2 0% possibly_damaging(0.902) deleterious(0.01) deleterious(0.762) HMMPfam_DUF634,superfamily_ARM-type_fold NXF2B 728343 genome.wustl.edu 37 X 101623452 101623452 + Missense_Mutation SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001099686.1 -1 provisional p.D242N 1.000 201 0% 313 16% 0 - benign(0.085) deleterious(0.01) neutral(0.412) superfamily_SSF52058 MORF4L2 9643 genome.wustl.edu 37 X 102931865 102931865 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001142418.1 -1 validated p.R31G 1.000 24 0% 78 50% 26 0% - - - HMMPfam_MRG NRK 203447 genome.wustl.edu 37 X 105190374 105190374 + Missense_Mutation SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_198465.2 +1 validated p.K1424T 1.000 109 0% 107 29.9% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_CNH,HMMSmart_SM00036 COL4A6 1288 genome.wustl.edu 37 X 107418365 107418365 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001847.2 -1 reviewed p.G972C 1.000 34 0% 67 40.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Collagen GUCY2F 2986 genome.wustl.edu 37 X 108696906 108696906 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001522.2 -1 reviewed p.E405D 0.969 159 0% 85 41.2% 0 - benign(0) tolerated(0.84) neutral(0.001) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I CHRDL1 91851 genome.wustl.edu 37 X 109937479 109937479 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001143981.1 -1 reviewed p.R230 1.000 89 0% 68 52.9% 0 - - - - NULL DCX 1641 genome.wustl.edu 37 X 110654030 110654030 + Missense_Mutation SNP C C A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000555.2 -1 reviewed p.S58I 1.000 125 0% 75 41.3% 0 - unknown(0) - - NULL TRPC5 7224 genome.wustl.edu 37 X 111020000 111020000 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_012471.2 -1 reviewed p.S821 0.000 66 0% 46 32.6% 0 - - - - NULL ZCCHC16 340595 genome.wustl.edu 37 X 111697980 111697980 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001004308.2 +1 validated p.S8 0.001 12 0% 26 34.6% 0 - - - - NULL HTR2C 3358 genome.wustl.edu 37 X 114141329 114141329 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000868.2 +1 reviewed p.R243Q 0.877 68 0% 68 55.9% 0 - possibly_damaging(0.938) deleterious(0.03) deleterious(0.748) HMMPfam_7tm_1,superfamily_SSF81321 WDR44 54521 genome.wustl.edu 37 X 117529212 117529212 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_019045.4 +1 reviewed p.E320K 1.000 46 0% 49 32.7% 0 - possibly_damaging(0.856) deleterious(0.03) deleterious(0.695) superfamily_WD40 repeat-like DOCK11 139818 genome.wustl.edu 37 X 117700081 117700081 + Missense_Mutation SNP G G T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_144658.3 +1 validated p.K269N 1.000 106 0% 67 50.7% 0 - probably_damaging(0.968) tolerated(0.06) deleterious(0.732) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 RPL39 6170 genome.wustl.edu 37 X 118920674 118920674 + Missense_Mutation SNP A A T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001000.2 -1 reviewed p.H43Q 0.687 155 0% 121 47.9% 3598 0% possibly_damaging(0.827) deleterious(0) deleterious(0.758) HMMPfam_Ribosomal_L39,superfamily_Ribosomal protein L39e,PatternScan_RIBOSOMAL_L39E UPF3B 65109 genome.wustl.edu 37 X 118986752 118986752 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_080632.1 -1 reviewed p.K47R 1.000 43 0% 163 36.2% 1 100% possibly_damaging(0.662) tolerated(0.27) neutral(0.268) HMMPfam_Smg4_UPF3 ODZ1 10178 genome.wustl.edu 37 X 123554171 123554171 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_014253.3 -1 reviewed p.T1651P 1.000 48 0% 35 37.1% 0 - probably_damaging(0.988) tolerated(0.2) deleterious(0.486) HMMPfam_RHS_repeat,superfamily_N2O_reductase_N SMARCA1 6594 genome.wustl.edu 37 X 128605271 128605271 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003069.3 -1 reviewed p.A825 0.987 318 0% 122 44.3% 5 100% - - - HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI,superfamily_P-loop containing nucleoside triphosphate hydrolases SMARCA1 6594 genome.wustl.edu 37 X 128657346 128657346 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_003069.3 -1 reviewed p.M1T 1.000 48 0% 98 41.8% 1 100% unknown(0) deleterious(0.01) - NULL FRMD7 90167 genome.wustl.edu 37 X 131212227 131212227 + Missense_Mutation SNP T T A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_194277.2 -1 reviewed p.E606D 1.000 103 0% 55 49.1% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL MAP7D3 79649 genome.wustl.edu 37 X 135326867 135326867 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_024597.3 -1 reviewed p.K114R 0.000 652 0.2% 510 41.2% 0 - benign(0.106) deleterious(0.01) neutral(0.414) NULL BRS3 680 genome.wustl.edu 37 X 135570622 135570622 + Silent SNP A A C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001727.1 +1 validated p.R117 0.999 111 0% 158 38.6% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 CD40LG 959 genome.wustl.edu 37 X 135732530 135732530 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000074.2 +1 reviewed p.K88E 0.079 129 0% 53 47.2% 0 - benign(0.001) tolerated(0.19) neutral(0.050) NULL ATP11C 286410 genome.wustl.edu 37 X 138844171 138844171 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173694.4 -1 validated p.G866 0.998 134 0% 84 39.3% 0 - - - - NULL FMR1 2332 genome.wustl.edu 37 X 147014238 147014238 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002024.5 +1 reviewed p.L279P 1.000 198 0% 126 45.2% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) HMGB3 3149 genome.wustl.edu 37 X 150156381 150156381 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005342.2 +1 validated p.D199 1.000 54 0% 75 56% 5 40% - - - NULL PASD1 139135 genome.wustl.edu 37 X 150793988 150793988 + Missense_Mutation SNP T T G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_173493.2 +1 reviewed p.F205L 0.000 102 0% 97 43.3% 0 - possibly_damaging(0.936) deleterious(0.02) deleterious(0.764) NULL MIR224 407009 genome.wustl.edu 37 X 151127117 151127117 + RNA SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000384889 -1 known NULL 1.000 91 0% 123 56.1% 0 - - - - - PNMA3 29944 genome.wustl.edu 37 X 152226883 152226883 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000370265 +1 known p.A450 0.000 91 0% 190 43.7% 0 - - - - NULL FAM58A 92002 genome.wustl.edu 37 X 152853904 152853904 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_152274.3 -1 reviewed p.*222R 1.000 145 0% 177 26% 25 0% - - - NULL IDH3G 3421 genome.wustl.edu 37 X 153051333 153051333 + Silent SNP C C T novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d ENST00000454076 -1 known p.G210S 0.986 16 0% 68 48.5% 622 0% - - - NULL L1CAM 3897 genome.wustl.edu 37 X 153132960 153132960 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000425.3 -1 reviewed p.Y663C 0.033 40 0% 172 41.3% 0 - benign(0.412) tolerated(0.12) neutral(0.394) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III HCFC1 3054 genome.wustl.edu 37 X 153225251 153225251 + Splice_Site SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_005334.2 -1 reviewed e8+2 0.992 18 0% 85 48.2% 0 - - - - - TAZ 6901 genome.wustl.edu 37 X 153641665 153641665 + RNA SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NR_024048.1 +1 reviewed NULL 0.001 14 0% 42 59.5% 10 0% - - - - PLXNA3 55558 genome.wustl.edu 37 X 153689812 153689812 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017514.3 +1 reviewed p.Q323R 1.000 16 0% 88 40.9% 2 0% probably_damaging(0.978) deleterious(0.04) deleterious(0.769) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema PLXNA3 55558 genome.wustl.edu 37 X 153695633 153695633 + Missense_Mutation SNP G G A novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_017514.3 +1 reviewed p.G1087E 0.553 13 0% 42 50% 9 0% benign(0.152) tolerated(0.91) neutral(0.013) HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set GAB3 139716 genome.wustl.edu 37 X 153924243 153924243 + Silent SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001081573.1 -1 reviewed p.R493 1.000 222 0% 119 47.1% 0 - - - - NULL MPP1 4354 genome.wustl.edu 37 X 154009532 154009532 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_002436.3 -1 reviewed p.P402 0.044 66 0% 179 41.3% 8 0% - - - HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases F8 2157 genome.wustl.edu 37 X 154157330 154157330 + Missense_Mutation SNP T T C novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000132.3 -1 reviewed p.K1579E 0.001 154 0% 51 52.9% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL F8 2157 genome.wustl.edu 37 X 154158657 154158657 + Silent SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_000132.3 -1 reviewed p.S1136 0.001 83 0% 67 46.3% 0 - - - - NULL CLIC2 1193 genome.wustl.edu 37 X 154528125 154528125 + Missense_Mutation SNP A A G novel TCGA-BS-A0UJ-01A-12D-A10B-09 TCGA-BS-A0UJ-10A-01D-A127-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 29a95c44-e3a6-4b11-8759-652d0846fc62 109286f3-44ac-4376-a2c2-31eff69ff97d NM_001289.4 -1 reviewed p.F89S 1.000 238 0% 332 41.9% 3 0% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) superfamily_Thioredoxin-like