Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain UBXN11 91544 genome.wustl.edu 37 1 26608854 26608883 + In_Frame_Del DEL CCGGGACCGGGACCGGGACTGGGGCCGGGA CCGGGACCGGGACCGGGACTGGGGCCGGGA - novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 CCGGGACCGGGACCGGGACTGGGGCCGGGA CCGGGACCGGGACCGGGACTGGGGCCGGGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_183008.2 -1 reviewed p.GPSPGPGPGP492in_frame_del 0.042:0.024:0.015:0.010:0.006:0.004:0.004:0.008:0.005:0.003:0.002:0.004:0.007:0.010:0.014:0.019:0.018:0.000:0.000:0.000:0.001:0.002:0.005:0.007:0.007:0.000:0.001:0.000:0.000:0.000 - - - - - - - - - NULL TNNI3K 51086 genome.wustl.edu 37 1 74954913 74954913 + Missense_Mutation SNP A A G novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_001112808.1 +1 validated p.E822G 1.000 116 0% 35 40% 0 - possibly_damaging(0.736) deleterious(0.05) deleterious(0.615) HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) RGS5 8490 genome.wustl.edu 37 1 163172591 163172591 + Missense_Mutation SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_003617.3 -1 validated p.C12Y 1.000 85 0% 146 24.7% 2 0% possibly_damaging(0.829) deleterious(0) deleterious(0.759) NULL FAM5C 339479 genome.wustl.edu 37 1 190423818 190423818 + Missense_Mutation SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_199051.1 -1 provisional p.R68Q 1.000 114 0% 197 67.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MACPF PXDN 7837 genome.wustl.edu 37 2 1652781 1652781 + Missense_Mutation SNP C C A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_012293.1 -1 validated p.R924L 0.097 3 0.000 8 0.875 5 40% benign(0.001) tolerated(0.24) neutral(0.037) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases RANBP2 5903 genome.wustl.edu 37 2 109384143 109384143 + Missense_Mutation SNP A A G novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_006267.4 +1 reviewed p.N2383S 1.000 171 0% 128 26.6% 3 66.6% probably_damaging(0.994) - - HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729 WDR75 84128 genome.wustl.edu 37 2 190339478 190339478 + Silent SNP T T C novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_032168.1 +1 provisional p.A744 0.303 110 0% 142 65.5% 55 67.2% - - - NULL CTNNB1 1499 genome.wustl.edu 37 3 41266101 41266101 + Missense_Mutation SNP C C G rs121913400 byCluster TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_001098209.1 +1 reviewed p.S33C 1.000 49 0% 43 34.9% 12 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CACNA2D2 9254 genome.wustl.edu 37 3 50421684 50421684 + Missense_Mutation SNP T T A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_001005505.1 -1 reviewed p.N199Y 1.000 143 0% 281 38.4% 0 - benign(0.223) deleterious(0.03) neutral(0.387) HMMPfam_VWA_N SI 6476 genome.wustl.edu 37 3 164704924 164704924 + Splice_Site SNP A A C novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_001041.3 -1 reviewed e44+2 1.000 162 0% 83 47% 0 - - - - - PIK3CA 5290 genome.wustl.edu 37 3 178936092 178936092 + Missense_Mutation SNP A A C rs121913274 byCluster TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_006218.2 +1 reviewed p.E545A 1.000 139 0% 58 46.6% 2 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold GAK 2580 genome.wustl.edu 37 4 853415 853415 + Missense_Mutation SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_005255.2 -1 validated p.D1088N 0.981 18 0% 73 38.4% 15 60% benign(0.054) tolerated(1) neutral(0.004) NULL NDNF 79625 genome.wustl.edu 37 4 121966964 121966964 + Missense_Mutation SNP C C A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_024574.3 -1 validated p.W10L 1.000 31 0% 21 42.9% 0 - unknown(0) tolerated(1) - NULL FSTL5 56884 genome.wustl.edu 37 4 162376279 162376279 + Missense_Mutation SNP A A G novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_020116.3 -1 validated p.V573A 0.999 110 0% 60 50% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) superfamily_Amine_DH_B_like SKP2 6502 genome.wustl.edu 37 5 36168528 36168528 + Missense_Mutation SNP G G A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_005983.2 +1 reviewed p.R217Q 0.001 128 0% 124 41.9% 2 50% benign(0) tolerated(0.59) neutral(0.004) HMMSmart_SM00367,superfamily_RNI-like PPWD1 23398 genome.wustl.edu 37 5 64875349 64875349 + Missense_Mutation SNP A A T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_015342.2 +1 validated p.E420V 1.000 165 0% 105 38.1% 0 - probably_damaging(0.993) tolerated(0.07) deleterious(0.769) superfamily_WD40_like MAP3K5 4217 genome.wustl.edu 37 6 137017156 137017161 + In_Frame_Del DEL TTTCTA TTTCTA - novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 TTTCTA TTTCTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_005923.3 -1 reviewed p.LEKLPT337in_frame_del* 1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL SOX17 64321 genome.wustl.edu 37 8 55372518 55372518 + Missense_Mutation SNP G G T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_022454.3 +1 reviewed p.S403I 1.000 16 0% 55 45.5% 48 56.2% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL FOXD4 2298 genome.wustl.edu 37 9 118067 118067 + Missense_Mutation SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_207305.3 -1 validated p.R18Q 0.556 51 0% 203 20.2% 0 - probably_damaging(0.995) tolerated(0.05) deleterious(0.803) NULL GLT6D1 360203 genome.wustl.edu 37 9 138516117 138516117 + Silent SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_182974.2 -1 provisional p.P219 0.000 131 0% 98 38.8% 0 - - - - HMMPfam_Glyco_transf_6,superfamily_SSF53448 DDX50 79009 genome.wustl.edu 37 10 70673835 70673837 + In_Frame_Del DEL ACT ACT - novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 ACT ACT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_024045.1 +1 reviewed p.T322in_frame_del 1.000:1.000:0.993 - - - - - - - - - HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases MUC5B 727897 genome.wustl.edu 37 11 1247869 1247869 + Missense_Mutation SNP G G A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_002458.1 +1 validated p.R75Q 0.987 5 0.000 35 0.486 0 - probably_damaging(0.99) - - HMMSmart_SM00216 PACSIN3 29763 genome.wustl.edu 37 11 47199528 47199528 + Missense_Mutation SNP C C A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_016223.4 -1 reviewed p.R410L 0.998 17 0% 131 45% 51 54.9% possibly_damaging(0.741) deleterious(0.01) deleterious(0.677) HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 OR8I2 120586 genome.wustl.edu 37 11 55861593 55861593 + Silent SNP G G A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_001003750.1 +1 provisional p.A270 0.001 69 0% 37 13.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like C11orf53 341032 genome.wustl.edu 37 11 111154826 111154826 + Silent SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_198498.1 +1 predicted p.Y11 0.160 48 0% 83 38.6% 0 - - - - NULL TECTA 7007 genome.wustl.edu 37 11 121028792 121028792 + Silent SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_005422.2 +1 reviewed p.I1516 1.000 21 0% 95 38.9% 0 - - - - HMMPfam_VWD,HMMSmart_SM00216 INHBC 3626 genome.wustl.edu 37 12 57843560 57843560 + Missense_Mutation SNP G G A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_005538.2 +1 reviewed p.A272T 0.980 26 0% 61 39.3% 0 - possibly_damaging(0.937) tolerated(0.18) neutral(0.439) HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines DYRK2 8445 genome.wustl.edu 37 12 68051877 68051877 + Missense_Mutation SNP C C A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_006482.2 +1 reviewed p.A397D 1.000 70 0% 134 41.8% 2 0% possibly_damaging(0.714) tolerated(0.18) neutral(0.314) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase KNTC1 9735 genome.wustl.edu 37 12 123089426 123089426 + Silent SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_014708.4 +1 reviewed p.D1726 0.996 34 0% 39 43.6% 6 50% - - - PatternScan_BZIP_BASIC,HMMPfam_Rod_C EP400 57634 genome.wustl.edu 37 12 132512056 132512056 + Missense_Mutation SNP C C G novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_015409.3 +1 validated p.P1696A 0.835 17 0% 57 42.1% 1 100% unknown(0) - - NULL WDR89 112840 genome.wustl.edu 37 14 64066162 64066162 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_001008726.1 -1 validated p.E167* 1.000 140 0% 208 45.2% 0 - - - - HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 MFAP1 4236 genome.wustl.edu 37 15 44106856 44106856 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_005926.2 -1 validated p.Q154* 1.000 202 0.5% 268 42.9% 2 0% - - - NULL RASGRF1 5923 genome.wustl.edu 37 15 79339274 79339274 + Missense_Mutation SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_002891.4 -1 reviewed p.R231Q 1.000 37 0% 42 31% 1 0% possibly_damaging(0.756) tolerated(0.33) neutral(0.303) superfamily_DBL homology domain (DH-domain) CHD9 80205 genome.wustl.edu 37 16 53191081 53191081 + Missense_Mutation SNP C C A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_025134.4 +1 validated p.N360K 1.000 79 0% 44 38.6% 0 - benign(0.323) deleterious(0.01) deleterious(0.507) NULL MC1R 4157 genome.wustl.edu 37 16 89986227 89986227 + Silent SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_002386.3 +1 reviewed p.A187 0.922 8 0.000 59 0.339 20 65% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like FAM57A 79850 genome.wustl.edu 37 17 636266 636267 + Frame_Shift_Ins INS - - GGGCC novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa ENST00000451373 +1 known p.P92fs 0.000:0.000 - - - - - - - - - NULL KRT24 192666 genome.wustl.edu 37 17 38857539 38857539 + Missense_Mutation SNP G G C novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_019016.2 -1 reviewed p.N236K 0.310 48 0% 58 41.4% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Filament SPOP 8405 genome.wustl.edu 37 17 47696599 47696599 + Missense_Mutation SNP T T C novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_001007226.1 -1 reviewed p.M117V 1.000 250 0% 210 42.4% 2 0% possibly_damaging(0.774) tolerated(0.2) neutral(0.337) HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like CLASRP 11129 genome.wustl.edu 37 19 45543479 45543479 + Silent SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_007056.2 +1 validated p.H3 1.000 85 0% 221 47.5% 9 11.1% - - - NULL NPAS1 4861 genome.wustl.edu 37 19 47535971 47535971 + Missense_Mutation SNP T T C novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_002517.2 +1 reviewed p.I168T 1.000 58 0% 130 49.2% 0 - possibly_damaging(0.681) tolerated(0.28) neutral(0.274) HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785 DNAAF3 352909 genome.wustl.edu 37 19 55677760 55677760 + Missense_Mutation SNP C C G novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_178837.3 -1 validated p.G55R 0.113 12 0% 50 48% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL BPIFA2 140683 genome.wustl.edu 37 20 31767409 31767409 + Splice_Site SNP G G A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_080574.2 +1 validated e6-1 0.204 142 0% 348 60.6% 0 - - - - - LAMA5 3911 genome.wustl.edu 37 20 60893979 60893979 + Missense_Mutation SNP C C T rs141245936 by1000genomes TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_005560.3 -1 reviewed p.R2321Q 0.040 5 0.000 22 0.409 16 68.7% probably_damaging(0.994) tolerated(0.07) deleterious(0.771) HMMPfam_Laminin_I BRWD1 54014 genome.wustl.edu 37 21 40670369 40670369 + Frame_Shift_Del DEL C C - novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_018963.3 -1 reviewed p.R113fs 1.000 - - - - - - - - - NULL PRR14L 253143 genome.wustl.edu 37 22 32112010 32112010 + Nonsense_Mutation SNP G G C rs138229470 by1000genomes TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_173566.2 -1 validated p.Y605* 0.000 130 0% 50 32% 0 - - - - NULL MSN 4478 genome.wustl.edu 37 X 64947697 64947697 + Missense_Mutation SNP A A G novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_002444.2 +1 reviewed p.R40G 0.998 570 0.2% 214 37.9% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236 GDPD2 54857 genome.wustl.edu 37 X 69644862 69644862 + Missense_Mutation SNP G G A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_017711.3 +1 reviewed p.V10I 0.010 14 0% 33 42.4% 0 - benign(0) tolerated(0.46) neutral(0.012) NULL UPRT 139596 genome.wustl.edu 37 X 74523321 74523321 + Missense_Mutation SNP G G A novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_145052.3 +1 reviewed p.G302E 1.000 308 0% 101 37.6% 1 100% possibly_damaging(0.939) deleterious(0) deleterious(0.829) superfamily_PRTase-like HAUS7 55559 genome.wustl.edu 37 X 152719912 152719912 + Missense_Mutation SNP C C T novel TCGA-BS-A0UT-01A-11D-A10B-09 TCGA-BS-A0UT-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 92be4e69-e73c-4018-b5f1-5bcbcdd5c845 b00c9ebb-b66a-4e09-8b14-9dd75301c2fa NM_017518.6 -1 reviewed p.V339M 0.001 8 0.000 42 0.405 20 0% possibly_damaging(0.861) tolerated(0.1) deleterious(0.619) NULL