Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain MTF1 4520 genome.wustl.edu 37 1 38305669 38305669 + Silent SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_005955.2 -1 reviewed p.H190 0.766 208 0% 83 22.9% 10 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers EVI5 7813 genome.wustl.edu 37 1 93089830 93089830 + Missense_Mutation SNP T T A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_005665.4 -1 validated p.E561V 1.000 347 0.3% 153 34% 5 60% possibly_damaging(0.637) deleterious(0.02) deleterious(0.606) NULL CNST 163882 genome.wustl.edu 37 1 246784919 246784919 + Missense_Mutation SNP C C A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_152609.2 +1 validated p.P190T 1.000 119 0.8% 114 25.4% 18 16.6% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL OR2W5 441932 genome.wustl.edu 37 1 247654488 247654488 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001004698.2 +1 validated p.R20Q 0.002 339 0% 325 23.4% 0 - - - - superfamily_Family A G protein-coupled receptor-like LOC100289480 100289480 genome.wustl.edu 37 3 32611934 32611934 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 XM_002342324.1 +1 model p.G11D 0.934 8 0.000 18 0.389 2 50% - - - NULL XIRP1 165904 genome.wustl.edu 37 3 39230143 39230143 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_194293.2 -1 provisional p.A265V 0.596 24 0% 42 47.6% 0 - probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_Xin CCDC51 79714 genome.wustl.edu 37 3 48474424 48474424 + Silent SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_024661.3 -1 validated p.L210 1.000 49 0% 66 37.9% 18 50% - - - NULL LAMB2 3913 genome.wustl.edu 37 3 49168415 49168415 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_002292.3 -1 reviewed p.A295T 0.998 100 0% 98 25.5% 54 40.7% possibly_damaging(0.659) tolerated(0.1) deleterious(0.519) HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196 MME 4311 genome.wustl.edu 37 3 154858008 154858008 + Missense_Mutation SNP A A T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_000902.3 +1 reviewed p.D295V 1.000 70 0% 28 46.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) "HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain" N4BP2 55728 genome.wustl.edu 37 4 40124796 40124796 + Silent SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 ENST00000513269 +1 known p.E1063K 0.999 270 0% 147 39.5% 1 100% - - - NULL METTL14 57721 genome.wustl.edu 37 4 119610560 119610561 + Frame_Shift_Ins INS - - T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_020961.2 +1 provisional p.K65fs 1.000:0.987 - - - - - - - - - NULL METTL14 57721 genome.wustl.edu 37 4 119626803 119626803 + Missense_Mutation SNP G G C novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_020961.2 +1 provisional p.R298P 1.000 198 0% 106 39.6% 17 29.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MT-A70 USP38 84640 genome.wustl.edu 37 4 144127340 144127340 + Missense_Mutation SNP A A G novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_032557.5 +1 validated p.Y455C 1.000 187 0% 57 43.9% 3 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_Cysteine proteinases MCTP1 79772 genome.wustl.edu 37 5 94114835 94114835 + Nonsense_Mutation SNP C C A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_024717.4 -1 validated p.E864* 1.000 321 0% 128 48.4% 0 - - - - NULL PSD2 84249 genome.wustl.edu 37 5 139193808 139193808 + Nonsense_Mutation SNP C C A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_032289.2 +1 provisional p.S292* 1.000 46 0% 38 31.6% 0 - - - - HMMPfam_Sec7,HMMSmart_SM00222 FAT2 2196 genome.wustl.edu 37 5 150946215 150946215 + Nonsense_Mutation SNP C C A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001447.2 -1 reviewed p.E760* 0.932 99 0% 44 40.9% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like HIST1H2AM 8336 genome.wustl.edu 37 6 27860699 27860699 + Missense_Mutation SNP T T C novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_003514.2 -1 reviewed p.T77A 1.000 171 0% 210 36.2% 4 75% benign(0.01) deleterious(0.01) neutral(0.406) HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold C6orf132 647024 genome.wustl.edu 37 6 42073045 42073045 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 ENST00000341865 -1 known p.R869C 0.436 77 0% 124 39.5% 22 45.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FNDC1 84624 genome.wustl.edu 37 6 159636010 159636010 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_032532.2 +1 validated p.R165H 0.011 86 0% 41 46.3% 0 - unknown(0) tolerated(0.13) - HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like TRRAP 8295 genome.wustl.edu 37 7 98574219 98574219 + Silent SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 ENST00000456197 +1 known p.R2406H 0.015 66 0% 77 32.5% 27 33.3% - - - superfamily_ARM repeat ASB15 142685 genome.wustl.edu 37 7 123269120 123269120 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_080928.3 +1 validated p.V358I 1.000 190 0% 90 34.4% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat UNC5D 137970 genome.wustl.edu 37 8 35631949 35631949 + Missense_Mutation SNP A A G novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_080872.2 +1 validated p.K871E 1.000 273 0% 100 41% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain PXDNL 137902 genome.wustl.edu 37 8 52321236 52321236 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_144651.4 -1 validated p.T983M 0.000 30 0% 57 35.1% 0 - benign(0.03) tolerated(0.07) neutral(0.321) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases SOX17 64321 genome.wustl.edu 37 8 55370985 55370985 + Missense_Mutation SNP C C G novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_022454.3 +1 reviewed p.A96G 1.000 16 0% 20 60% 429 45.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box CSMD3 114788 genome.wustl.edu 37 8 113353805 113353805 + Missense_Mutation SNP G G T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_198123.1 -1 validated p.Q2185K 1.000 188 0% 101 32.7% 0 - possibly_damaging(0.598) tolerated(0.64) neutral(0.210) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain FAM120A 23196 genome.wustl.edu 37 9 96291907 96291908 + In_Frame_Ins INS - - GGCCATTCCTATGGGTGTTTTGTCCTTTTGTCCTTTTTTGAACCATTTTTCTGAGAA novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 ENST00000375389 +1 known p.597in_frame_insGCFVLLSFFEPFF*EGHSY 0.000:0.000 - - - - - - - - - NULL NUP214 8021 genome.wustl.edu 37 9 134027252 134027252 + Silent SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_005085.2 +1 reviewed p.L803 0.973 145 0% 92 31.5% 17 41.1% - - - NULL SNORD36C 26813 genome.wustl.edu 37 9 136217712 136217712 + RNA SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NR_000016.1 +1 validated NULL 0.991 51 0% 117 47.9% 6 33.3% - - - - PTEN 5728 genome.wustl.edu 37 10 89692904 89692904 + Missense_Mutation SNP C C G rs121909224 byCluster TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 ENST00000371953 +1 known p.R130G 1.000 262 0% 82 35.4% 61 49.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89717739 89717739 + Missense_Mutation SNP T T G novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 ENST00000371953 +1 known p.V255G 1.000 182 0.5% 85 34.1% 58 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 PTEN 5728 genome.wustl.edu 37 10 89720828 89720828 + Frame_Shift_Del DEL A A - novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 ENST00000371953 +1 known p.A328fs 1.000 - - - - - - - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 KNDC1 85442 genome.wustl.edu 37 10 135003102 135003102 + Missense_Mutation SNP C C G novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_152643.6 +1 validated p.A481G 1.000 94 0% 131 41.2% 19 26.3% possibly_damaging(0.93) tolerated(0.06) deleterious(0.699) HMMSmart_SM00750 OR8I2 120586 genome.wustl.edu 37 11 55861593 55861593 + Silent SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001003750.1 +1 provisional p.A270 0.001 127 0% 54 18.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PPP1R32 220004 genome.wustl.edu 37 11 61250125 61250125 + Splice_Site SNP A A G novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_145017.2 +1 validated e3-2 0.872 32 0% 31 25.8% 3 100% - - - - MUS81 80198 genome.wustl.edu 37 11 65633514 65633514 + Silent SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_025128.4 +1 validated p.P549 0.129 136 0% 539 69.9% 53 0% - - - NULL CABP2 51475 genome.wustl.edu 37 11 67287536 67287536 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_016366.2 -1 reviewed p.D159N 1.000 40 0% 53 50.9% 0 - benign(0.026) deleterious(0.02) neutral(0.384) HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand GRM5 2915 genome.wustl.edu 37 11 88781038 88781038 + Missense_Mutation SNP C C G novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001143831.2 -1 reviewed p.M1I 1.000 80 1.3% 47 29.8% 3 33.3% unknown(0) tolerated(0.59) - NULL MGAT4C 25834 genome.wustl.edu 37 12 86377334 86377334 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_013244.3 -1 validated p.R88C 1.000 191 0% 125 43.2% 0 - probably_damaging(0.999) tolerated(0.11) deleterious(0.762) HMMPfam_Glyco_transf_54 KLHL1 57626 genome.wustl.edu 37 13 70681490 70681490 + Missense_Mutation SNP C C A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_020866.2 -1 validated p.Q114H 0.999 56 0% 48 33.3% 0 - benign(0.18) tolerated(0.15) neutral(0.258) NULL ATP11A 23250 genome.wustl.edu 37 13 113510376 113510376 + Missense_Mutation SNP A A C novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_032189.3 +1 reviewed p.M799L 0.999 53 0% 48 45.8% 10 60% possibly_damaging(0.935) tolerated(0.16) neutral(0.440) superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M FERMT2 10979 genome.wustl.edu 37 14 53348116 53348116 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001134999.1 -1 validated p.P200S 1.000 202 0% 65 15.4% 3 0% probably_damaging(0.994) tolerated(0.06) deleterious(0.774) HMMSmart_B41 KIAA0556 23247 genome.wustl.edu 37 16 27585233 27585233 + Nonsense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_015202.2 +1 validated p.R7* 0.971 120 0% 70 25.7% 8 50% - - - NULL CTCF 10664 genome.wustl.edu 37 16 67663300 67663300 + Splice_Site SNP G G C novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_006565.2 +1 reviewed e8-1 1.000 257 0% 180 43.9% 0 - - - - - CDC27 996 genome.wustl.edu 37 17 45219311 45219311 + Missense_Mutation SNP T T C novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001114091.1 -1 reviewed p.I493V 1.000 82 2.4% 85 21.2% 14 0% benign(0.002) tolerated(0.86) neutral(0.001) superfamily_TPR-like ITGB4 3691 genome.wustl.edu 37 17 73746835 73746835 + Silent SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_000213.3 +1 reviewed p.L1183 1.000 52 0% 63 49.2% 97 45.3% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SAFB 6294 genome.wustl.edu 37 19 5668295 5668295 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_002967.2 +1 reviewed p.R914H 1.000 36 0% 52 42.3% 128 51.5% unknown(0) deleterious(0) - NULL ZNF439 90594 genome.wustl.edu 37 19 11978324 11978324 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_152262.2 +1 provisional p.A147V 0.001 242 0% 104 46.2% 8 25% possibly_damaging(0.731) tolerated(0.13) deleterious(0.520) NULL CHERP 10523 genome.wustl.edu 37 19 16631072 16631072 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_006387.5 -1 validated p.R784W 1.000 49 0% 54 42.6% 74 45.9% unknown(0) deleterious(0.01) - NULL PSG3 5671 genome.wustl.edu 37 19 43242875 43242875 + Splice_Site SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_021016.3 -1 validated e2+1 0.052 405 0% 177 36.2% 0 - - - - - KLK4 9622 genome.wustl.edu 37 19 51411840 51411840 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_004917.3 -1 reviewed p.A157V 0.000 69 1.4% 51 52.9% 3 0% benign(0) deleterious(0.03) neutral(0.364) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases ZBTB45 84878 genome.wustl.edu 37 19 59028407 59028407 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_032792.2 -1 provisional p.E212K 0.954 16 0% 12 33.3% 31 51.6% benign(0.076) tolerated(0.63) neutral(0.009) NULL TPTE 7179 genome.wustl.edu 37 21 10971324 10971324 + Silent SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_199261.2 -1 validated p.A11 0.000 204 0% 114 14.9% 0 - - - - NULL TFIP11 24144 genome.wustl.edu 37 22 26888032 26888032 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001008697.1 -1 validated p.E821K 1.000 67 0% 61 39.3% 61 44.2% benign(0.001) tolerated(0.32) neutral(0.024) NULL ELFN2 114794 genome.wustl.edu 37 22 37769417 37769419 + In_Frame_Del DEL CCT CCT - novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 CCT CCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_052906.3 -1 validated p.E719in_frame_del 0.834:0.843:1.000 - - - - - - - - - NULL EP300 2033 genome.wustl.edu 37 22 41568517 41568518 + Frame_Shift_Ins INS - - G novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001429.3 +1 reviewed p.A1489fs 1.000:1.000 - - - - - - - - - HMMPfam_DUF906 PLXNB2 23654 genome.wustl.edu 37 22 50722387 50722387 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_012401.2 -1 validated p.D766N 1.000 17 0% 38 39.5% 140 41.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PSI,HMMSmart_PSI CACNA1F 778 genome.wustl.edu 37 X 49070330 49070330 + Silent SNP G G A novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_005183.2 -1 reviewed p.D1258 0.994 113 0% 114 33.3% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels P2RY10 27334 genome.wustl.edu 37 X 78216296 78216296 + Silent SNP T T C novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_014499.2 +1 reviewed p.Y93 1.000 198 0% 81 30.9% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 NXF2 56001 genome.wustl.edu 37 X 101572362 101572362 + Missense_Mutation SNP G G T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_017809.3 +1 reviewed p.R87I 0.000 479 0% 304 18.1% 1 0% possibly_damaging(0.931) deleterious(0.01) deleterious(0.783) NULL CT47B1 643311 genome.wustl.edu 37 X 120008793 120008793 + Silent SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001145718.1 -1 validated p.P244 0.000 193 0% 302 41.1% 0 - - - - NULL FHL1 2273 genome.wustl.edu 37 X 135288596 135288596 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001449.4 +1 reviewed p.A2V 0.926 77 0% 37 29.7% 32 0% benign(0.005) deleterious(0.01) neutral(0.406) NULL SPANXN4 441525 genome.wustl.edu 37 X 142113856 142113856 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZR-01A-21D-A10M-09 TCGA-D1-A0ZR-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx aba3010c-d660-430a-a64e-436df39b1f12 931b2500-e451-4a64-9317-635faea41e37 NM_001009613.2 +1 reviewed p.S19F 0.000 380 0% 169 33.7% 0 - possibly_damaging(0.952) deleterious(0) deleterious(0.840) NULL